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Search of human proteins with 4505331
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505331 N-ethylmaleimide-sensitive factor attachment
protein, gamma [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,... 622 e-178
gi|44917606 N-ethylmaleimide-sensitive factor attachment protein... 64 2e-10
gi|47933379 N-ethylmaleimide-sensitive factor attachment protein... 60 2e-09
gi|34304360 nephrocystin 3 [Homo sapiens] 37 0.023
gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sap... 35 0.066
gi|73747889 a disintegrin and metalloprotease domain 17 prepropr... 33 0.25
gi|225735595 RNA polymerase II associated protein 3 isoform 3 [H... 33 0.42
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 33 0.42
gi|51317366 myosin XVIIIB [Homo sapiens] 33 0.42
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 32 0.55
gi|197333695 poly(A)-specific ribonuclease (deadenylation nuclea... 32 0.55
gi|4505611 poly(A)-specific ribonuclease (deadenylation nuclease... 32 0.55
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 31 1.2
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 31 1.2
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 31 1.2
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 31 1.2
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 30 2.1
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 30 2.1
gi|45439327 periplakin [Homo sapiens] 30 2.1
gi|12056463 coagulation factor VIII-associated protein [Homo sap... 30 2.8
gi|33188431 tetratricopeptide repeat protein isoform 3 [Homo sap... 30 2.8
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 30 2.8
gi|33188427 tetratricopeptide repeat protein isoform 2 [Homo sap... 30 2.8
gi|56090586 coagulation factor VIII-associated (intronic transcr... 30 2.8
gi|56090588 coagulation factor VIII-associated (intronic transcr... 30 2.8
gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens] 30 3.6
gi|55743151 WD repeat domain 19 [Homo sapiens] 30 3.6
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 29 4.7
gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Ho... 29 4.7
>gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,
gamma [Homo sapiens]
Length = 312
Score = 622 bits (1604), Expect = e-178
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLR 60
MAAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLR
Sbjct: 1 MAAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLR 60
Query: 61 EAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALER 120
EAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALER
Sbjct: 61 EAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALER 120
Query: 121 AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE 180
AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE
Sbjct: 121 AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE 180
Query: 181 KNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLE 240
KNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLE
Sbjct: 181 KNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLE 240
Query: 241 GYDQQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPATPQAKPDGVTATAA 300
GYDQQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPATPQAKPDGVTATAA
Sbjct: 241 GYDQQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPATPQAKPDGVTATAA 300
Query: 301 DEEEDEYSGGLC 312
DEEEDEYSGGLC
Sbjct: 301 DEEEDEYSGGLC 312
>gi|44917606 N-ethylmaleimide-sensitive factor attachment protein,
beta [Homo sapiens]
Length = 298
Score = 63.9 bits (154), Expect = 2e-10
Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 36/272 (13%)
Query: 3 AQKINEGLEHLAKAEKYLKT------GFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKD 56
A K E ++ +A+AEK +K G + A Y +AA FK AK + A +
Sbjct: 4 AGKEREAVQLMAEAEKRVKASHSFLRGLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGN 63
Query: 57 ACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAM 116
A + A H ++ +A ++ AG K+ EA+ + A +Y + G AA
Sbjct: 64 AFCQAAKLHMQLQSKHDSATSFVDAGNAYKKADP-QEAINCLNAAIDIYTDMGRFTIAAK 122
Query: 117 ALERAGKLIEN--VDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174
++ E VD EKA+ Y+Q+A+ ++ EE A + L K AA
Sbjct: 123 HHITIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKCLLKV------------AA 170
Query: 175 LSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY-VAAERC-----------VRESYS 222
+ Q E+ K IE Y T+ L+ DY A C E Y
Sbjct: 171 YAAQLEQ-YQKAIEIYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYE 229
Query: 223 --IPGFNGSEDCAALEQLLEGYDQQDQDQVSD 252
P F S +C L++LLE +++Q+ + ++
Sbjct: 230 EMFPAFTDSRECKLLKKLLEAHEEQNSEAYTE 261
>gi|47933379 N-ethylmaleimide-sensitive factor attachment protein,
alpha [Homo sapiens]
Length = 295
Score = 60.1 bits (144), Expect = 2e-09
Identities = 61/266 (22%), Positives = 116/266 (43%), Gaps = 34/266 (12%)
Query: 8 EGLEHLAKAEKYLK------TGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLRE 61
E + LA+AE+ +K +G + A Y +AA FK AK + A +A +
Sbjct: 9 EAMALLAEAERKVKNSQSFFSGLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQA 68
Query: 62 AVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERA 121
A H ++ AA + AG K+ EA+ + +A +Y + G AA
Sbjct: 69 AQLHLQLQSKHDAATCFVDAGNAFKKADP-QEAINCLMRAIEIYTDMGRFTIAAKHHISI 127
Query: 122 GKLIEN--VDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQK 179
++ E VD EKA+ Y+Q+A+ ++ EE A++ L++ + QK
Sbjct: 128 AEIYETELVDIEKAIAHYEQSADYYKGEESN-------SSANKCLLKVAGYAALLEQYQK 180
Query: 180 EKNIYKEIENYPT------------CYKKTIAQVLVHLHRNDYVAAERCVRESYSI-PGF 226
+IY+++ +K + + D + A+ V++ + P F
Sbjct: 181 AIDIYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCI-----DMLNAKLAVQKYEELFPAF 235
Query: 227 NGSEDCAALEQLLEGYDQQDQDQVSD 252
+ S +C +++LLE +++Q+ D ++
Sbjct: 236 SDSRECKLMKKLLEAHEEQNVDSYTE 261
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 37.0 bits (84), Expect = 0.023
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 29 PDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAY--EQAGMMLK 86
PD+ A A KQ+++A++ R A H + AY + ++ K
Sbjct: 1129 PDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYK 1188
Query: 87 EMQKLPEAVQLIEKASMMYLENGTP--DTAAMALERAGKLIENVDPE-KAVQLYQQTANV 143
+M KL +AV L E A + ++ P + A AL L + +A+ LY++ +
Sbjct: 1189 KMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKI 1248
Query: 144 FENE-ERLRQAV-ELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIE 188
+E+ R+ V E L + L G F++AA + K KE E
Sbjct: 1249 YEDSLGRMHPRVGETLKNLAVLSYEGGDFEKAA-ELYKRAMEIKEAE 1294
Score = 32.3 bits (72), Expect = 0.55
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 29 PDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFH--AAKAYEQAGMMLK 86
PD+ S A A+ +K + ++A + + H A A ++
Sbjct: 1171 PDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYS 1230
Query: 87 EMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENV--------DPEKAVQLYQ 138
+M+K EA+ L E+A +Y D+ R G+ ++N+ D EKA +LY+
Sbjct: 1231 QMKKHVEALPLYERALKIY-----EDSLGRMHPRVGETLKNLAVLSYEGGDFEKAAELYK 1285
Query: 139 QTANVFENEERL 150
+ + E E L
Sbjct: 1286 RAMEIKEAETSL 1297
>gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sapiens]
Length = 1288
Score = 35.4 bits (80), Expect = 0.066
Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 40/214 (18%)
Query: 56 DACLREAVAHENNRALFHAAKAYEQAGMMLKEM----------QKLPEAVQLIEKASMMY 105
+AC+ HE+ AL + E G +L+ + + L ++ I+++ ++
Sbjct: 978 EACI---TYHEHWLALAQQLRDREMEGRLLESLGQLYRNLNTARSLRRSLTCIKESLRIF 1034
Query: 106 LENGTPDTAAMALERAGKL---------------------IENVDPEKAVQLYQQTANVF 144
++ G D AA A AG+L +++ +P A++LY++ +VF
Sbjct: 1035 IDLGETDKAAEAWLGAGRLHYLMQEDELVELCLQAAIQTALKSEEPLLALKLYEEAGDVF 1094
Query: 145 ENEERLR-QAVELLGKASRLLVRGRRFDEAALSI-QKEKNIYKEIENYPTCYK-KTIAQV 201
N R R AVE + L R + L I K + +E Y + T+A
Sbjct: 1095 FNGTRHRHHAVEYYRAGAVPLARRLKAVRTELRIFNKLTELQISLEGYEKALEFATLAAR 1154
Query: 202 LVHL---HRNDYVAAERCVRESYSIPGFNGSEDC 232
L + R + VA R YS+ + +EDC
Sbjct: 1155 LSTVTGDQRQELVAFHRLATVYYSLHMYEMAEDC 1188
>gi|73747889 a disintegrin and metalloprotease domain 17
preproprotein [Homo sapiens]
Length = 824
Score = 33.5 bits (75), Expect = 0.25
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 227 NGSEDCAALEQLLEGYDQQDQDQVSDVCNSPLFKYMDNDYAKLGLSLV-----VPGGGIK 281
N +D ++ LLE + ++ S VC + LF Y D D LGL+ V GG+
Sbjct: 306 NEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVC 365
Query: 282 KKSPATPQAKPD-----GVTAT 298
K+ +P K + G+T+T
Sbjct: 366 PKAYYSPVGKKNIYLNSGLTST 387
>gi|225735595 RNA polymerase II associated protein 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 32.7 bits (73), Expect = 0.42
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 34 AASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHA--AKAYEQAGMMLKEMQKL 91
A SE + FK K +E+A + C +A + AL A A AY + + +
Sbjct: 123 AISEKDRGNGFFKEGK-YERAIE-CYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 180
Query: 92 PEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLR 151
+A+ L S + GT T L A + E V L + N +
Sbjct: 181 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETV-------LLLEPGN--------K 225
Query: 152 QAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYP 191
QAV L K + L+ +D+ L + +N+ K I+N P
Sbjct: 226 QAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPP 265
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 32.7 bits (73), Expect = 0.42
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 34 AASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHA--AKAYEQAGMMLKEMQKL 91
A SE + FK K +E+A + C +A + AL A A AY + + +
Sbjct: 282 AISEKDRGNGFFKEGK-YERAIE-CYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 339
Query: 92 PEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLR 151
+A+ L S + GT T L A + E V L + N +
Sbjct: 340 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETV-------LLLEPGN--------K 384
Query: 152 QAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYP 191
QAV L K + L+ +D+ L + +N+ K I+N P
Sbjct: 385 QAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPP 424
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 32.7 bits (73), Expect = 0.42
Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 59 LREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIE--KASMMYLENGTPDTAAM 116
LRE V EN + + +Q +E +L + V++++ K ++ + + A
Sbjct: 1626 LREKVTQENTSVRWELGQLQQQLKQKEQEASQLKQQVEMLQDHKRELLGSPSLGENCVAG 1685
Query: 117 ALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALS 176
ER KL + ++ +Q Q+ N + E+LRQ EL + + + + R D+
Sbjct: 1686 LKERLWKLESSALEQQKIQSQQE--NTIKQLEQLRQRFELEIERMKQMHQKDREDQE--- 1740
Query: 177 IQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGS 229
+E+E+ +K + Q+ + L + +Y + + E + G G+
Sbjct: 1741 --------EELEDVRQSCQKRLHQLEMQLEQ-EYEEKQMVLHEKQDLEGLIGT 1784
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 32.3 bits (72), Expect = 0.55
Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 52/197 (26%)
Query: 28 KPDYDSAASEYGKA--------------AVAFKNAKQFEQAKDACLREA-VAHENNRALF 72
K D+D+A Y KA A + + + ++ C + V EN
Sbjct: 238 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 297
Query: 73 HAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEK 132
AKAY + G + +K +A+ K+ E+ TPD
Sbjct: 298 QIAKAYARIGNSYFKEEKYKDAIHFYNKS---LAEHRTPD-------------------- 334
Query: 133 AVQLYQQTANVFENEERLRQ-----AVELLGKASRLLVRG------RRFDEAALSIQKEK 181
++ QQ + + +ERL A+E K + +G + + EA K+
Sbjct: 335 VLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA 394
Query: 182 NIYKEIENYPTCYKKTI 198
+Y N CY K +
Sbjct: 395 KLY---SNRAACYTKLL 408
>gi|197333695 poly(A)-specific ribonuclease (deadenylation nuclease)
isoform 2 [Homo sapiens]
Length = 578
Score = 32.3 bits (72), Expect = 0.55
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 167 GRRFDEAALSIQKEKNIYKEIENY---PTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
GR+ +E + + ++ +KE ++ P C T+ H +RN+ A V +
Sbjct: 453 GRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQN---HYYRNNSFTAPSTVGKRNLS 509
Query: 224 PGFNGSEDCAALEQLLEGYDQQDQDQVSDVCNSPLFKYMDN-DYAKLGLSLVVPGGGIKK 282
P S++ A LE + G + + +D C PL + K + P G I K
Sbjct: 510 P----SQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISK 565
Query: 283 KSPATPQAKPD 293
SPAT PD
Sbjct: 566 NSPATLFEVPD 576
>gi|4505611 poly(A)-specific ribonuclease (deadenylation nuclease)
isoform 1 [Homo sapiens]
Length = 639
Score = 32.3 bits (72), Expect = 0.55
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 167 GRRFDEAALSIQKEKNIYKEIENY---PTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
GR+ +E + + ++ +KE ++ P C T+ H +RN+ A V +
Sbjct: 514 GRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQN---HYYRNNSFTAPSTVGKRNLS 570
Query: 224 PGFNGSEDCAALEQLLEGYDQQDQDQVSDVCNSPLFKYMDN-DYAKLGLSLVVPGGGIKK 282
P S++ A LE + G + + +D C PL + K + P G I K
Sbjct: 571 P----SQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISK 626
Query: 283 KSPATPQAKPD 293
SPAT PD
Sbjct: 627 NSPATLFEVPD 637
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 52 EQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTP 111
EQ + C +E E L + + L E +KLP +L+E+ + +
Sbjct: 294 EQEERLCEQEERLREQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQ 353
Query: 112 DTAAMALERAGKLIENVDPEKAVQLYQQTANVFENE-----ERLRQAVELL 157
+ LER L E + + +L QQ +++ E ERLR+ +L
Sbjct: 354 EEQERLLERERLLEEVEELLEQERLRQQDERLWQQETLQELERLRELERML 404
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 31 YDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQK 90
YD E K V+F+ +++F+Q K++ ++ + + + L +A+ + + KE QK
Sbjct: 24 YDVKTLEVLKGPVSFQKSQRFKQQKES--KQNLNVDKDTTLPASARKVKSSESK-KESQK 80
Query: 91 LPEAVQLIEKASMMYL-ENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEER 149
+ ++++EK + L E G D LE +E ++ L ++T+ N
Sbjct: 81 NDKDLKILEKEIRVLLQERGAQDRRIQDLETE---LEKMEARLNAALREKTSLSANNATL 137
Query: 150 LRQAVEL 156
+Q +EL
Sbjct: 138 EKQLIEL 144
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 31.2 bits (69), Expect = 1.2
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 31 YDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQK 90
YD E K V+F+ +++F+Q K++ ++ + + + L A A + KE QK
Sbjct: 24 YDVKTLEVLKGPVSFQKSQRFKQQKES--KQNLNVDKDTTL--PASARKVKSSESKESQK 79
Query: 91 LPEAVQLIEKASMMYL-ENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEER 149
+ ++++EK + L E G D LE +E ++ L ++T+ N
Sbjct: 80 NDKDLKILEKEIRVLLQERGAQDRRIQDLETE---LEKMEARLNAALREKTSLSANNATL 136
Query: 150 LRQAVEL 156
+Q +EL
Sbjct: 137 EKQLIEL 143
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 31.2 bits (69), Expect = 1.2
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 49 KQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLEN 108
++ + AK+A RE E Q + +E + L E ++ + A+
Sbjct: 931 QELQDAKEAASREREGLER------------QVAGLQQEKESLQEKLKAAKAAAGSL--P 976
Query: 109 GTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQA-VELLGKASRLLVRG 167
G A A +RA L E E +Q +A + + + RL+ A E +L +G
Sbjct: 977 GLQAQLAQAEQRAQSLQEAAHQELNTLKFQLSAEIMDYQSRLKNAGEECKSLRGQLEEQG 1036
Query: 168 RRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRND 209
R+ A +++K K ++ +C +A+ + R D
Sbjct: 1037 RQLQAAEEAVEKLKATQADMGEKLSCTSNHLAECQAAMLRKD 1078
>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
[Homo sapiens]
Length = 1544
Score = 31.2 bits (69), Expect = 1.2
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 160 ASRLLVRGRRFDEAALSIQKEKNI--YKEIEN-YPTCYKKTIAQVLVHLHRNDYVAA--E 214
++RLL R R EAA QK + + YK++ P ++T+A ++ HL+R AA +
Sbjct: 993 SARLLPRWR---EAAELPQKNQRLEKYKDVIGCLPRVNRRTLATLIGHLYRVQKCAALNQ 1049
Query: 215 RCVRE-------SYSIPGFNGSEDCAALEQLLEGYDQQ---DQDQVSDV 253
C R S G + L++L++GY D DQV+ +
Sbjct: 1050 MCTRNLALLFAPSVFQTDGRGEHEVRVLQELIDGYISVFDIDSDQVAQI 1098
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 30.4 bits (67), Expect = 2.1
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 32 DSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRA-LFHAAKAYEQAGMMLKEMQK 90
++ + E K+ V + AK E+AK EA + E ++ + AK E+A +KE K
Sbjct: 687 EAKSPEKAKSPVK-EEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAK 745
Query: 91 LPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKA 133
PE + EKA L+ +P+ A E A + PEKA
Sbjct: 746 SPEKAKSPEKAKT--LDVKSPEAKTPAKEEARSPADKF-PEKA 785
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 30.4 bits (67), Expect = 2.1
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 7 NEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNA--------KQFEQA---K 55
+EG +HL +AE+ + + ++ +E KA V K ++ EQA +
Sbjct: 851 SEGRQHLEEAERERR--------EKEALQAELEKAVVRGKELGARLEHLQRELEQAALER 902
Query: 56 DACLREAVA-HENNRALFHAAKAYEQAGMMLKE---MQKLPEAVQLIEKASMMYLENGT- 110
LRE + H+ + L +A QA KE M+ A+QL E+ + L G
Sbjct: 903 QEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEE--LFQLRQGPA 960
Query: 111 ---PDTAA--MALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLV 165
P A +E + V+ A+ + ++ A + + Q L G+A LL+
Sbjct: 961 GLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGSLQGRAQELLL 1020
Query: 166 RGRRFDEAALSIQKEKNI 183
+ +R E + +Q EK++
Sbjct: 1021 QSQRAQEHSSRLQAEKSV 1038
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 30.4 bits (67), Expect = 2.1
Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 12/179 (6%)
Query: 5 KINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREA-V 63
++ + L+ + L + F + PD + +E K F N +Q + + L+ A
Sbjct: 671 EVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKA 730
Query: 64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123
A+E+ FH + ++ + E L + + + + D A + K
Sbjct: 731 AYEH----FHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASREQEVQK 786
Query: 124 LIENVDPEKAVQLYQQTANVFENE-ERLRQAVELLGKASRLLVRGRRFDEAALSIQKEK 181
+ N Q YQQ +E E E+LR ++L S + + R A +++E+
Sbjct: 787 ICAN------SQQYQQAVKDYELEAEKLRSLLDLENGRSSHVSKRARLQSPATKVKEEE 839
>gi|12056463 coagulation factor VIII-associated protein [Homo
sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 2.8
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 20 LKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFH----AA 75
LK FL+ KP+ A ++G+ + + A A + AVA +ALFH A
Sbjct: 33 LKKRFLR-KPNVAEAGEQFGQLGRELRAQECLPYA--AWCQLAVAR-CQQALFHGPGEAL 88
Query: 76 KAYEQAGMMLKEM--------------QKLPEAVQLIEKASMMYLENGTP-DTAAMALER 120
E A + L++ + L A + A ++LE G P AA+ LE
Sbjct: 89 ALTEAARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLEL 148
Query: 121 AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE 180
A L + P A +Q+ A + + + A++ LG+A+ + R + A +
Sbjct: 149 AAALRDLGQPAAAAGHFQRAAQL-QLPQLPLAALQALGEAASCQLLARDYTGALAVFTRM 207
Query: 181 KNIYKEIENYP 191
+ + +E ++P
Sbjct: 208 QRLAREHGSHP 218
>gi|33188431 tetratricopeptide repeat protein isoform 3 [Homo
sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 181 KNIYKEI---ENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
K Y+++ EN P K T+ Q L +H N + ++ +ESY+I
Sbjct: 222 KEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAI 267
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo
sapiens]
Length = 1079
Score = 30.0 bits (66), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 181 KNIYKEI---ENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
K Y+++ EN P K T+ Q L +H N + ++ +ESY+I
Sbjct: 222 KEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAI 267
>gi|33188427 tetratricopeptide repeat protein isoform 2 [Homo
sapiens]
Length = 1240
Score = 30.0 bits (66), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 181 KNIYKEI---ENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
K Y+++ EN P K T+ Q L +H N + ++ +ESY+I
Sbjct: 222 KEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAI 267
>gi|56090586 coagulation factor VIII-associated (intronic
transcript) 3 [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 2.8
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 20 LKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFH----AA 75
LK FL+ KP+ A ++G+ + + A A + AVA +ALFH A
Sbjct: 33 LKKRFLR-KPNVAEAGEQFGQLGRELRAQECLPYA--AWCQLAVAR-CQQALFHGPGEAL 88
Query: 76 KAYEQAGMMLKEM--------------QKLPEAVQLIEKASMMYLENGTP-DTAAMALER 120
E A + L++ + L A + A ++LE G P AA+ LE
Sbjct: 89 ALTEAARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLEL 148
Query: 121 AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE 180
A L + P A +Q+ A + + + A++ LG+A+ + R + A +
Sbjct: 149 AAALRDLGQPAAAAGHFQRAAQL-QLPQLPLAALQALGEAASCQLLARDYTGALAVFTRM 207
Query: 181 KNIYKEIENYP 191
+ + +E ++P
Sbjct: 208 QRLAREHGSHP 218
>gi|56090588 coagulation factor VIII-associated (intronic
transcript) 2 [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 2.8
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 20 LKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFH----AA 75
LK FL+ KP+ A ++G+ + + A A + AVA +ALFH A
Sbjct: 33 LKKRFLR-KPNVAEAGEQFGQLGRELRAQECLPYA--AWCQLAVAR-CQQALFHGPGEAL 88
Query: 76 KAYEQAGMMLKEM--------------QKLPEAVQLIEKASMMYLENGTP-DTAAMALER 120
E A + L++ + L A + A ++LE G P AA+ LE
Sbjct: 89 ALTEAARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLEL 148
Query: 121 AGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKE 180
A L + P A +Q+ A + + + A++ LG+A+ + R + A +
Sbjct: 149 AAALRDLGQPAAAAGHFQRAAQL-QLPQLPLAALQALGEAASCQLLARDYTGALAVFTRM 207
Query: 181 KNIYKEIENYP 191
+ + +E ++P
Sbjct: 208 QRLAREHGSHP 218
>gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 3.6
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 38 YGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQA-GMMLKEMQKLPEAVQ 96
YGK + F + QF+ DA L+ V AL ++ +Q+ M EMQK +Q
Sbjct: 65 YGKQKIYFADQDQFDMVSDADLQ--VLDGKIVALTAKVQSLQQSCRYMEAEMQK---EIQ 119
Query: 97 LIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVF-ENEERLRQAVE 155
++K Y E L+ +V PE+ Q+Y++ E +R R A E
Sbjct: 120 ELKKECAGYRER---------LKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMATE 170
Query: 156 LLGKASRLLVRGRR--FDEAALSIQKEKNI 183
L + ++ F+E + ++ N+
Sbjct: 171 LSDAILEGYPKSKKQFFEEVGIETDEDYNV 200
>gi|55743151 WD repeat domain 19 [Homo sapiens]
Length = 1342
Score = 29.6 bits (65), Expect = 3.6
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 5 KINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVA 64
K+ + L H++ + +L+ K A Y +A VA++NAKQ++ + +R +
Sbjct: 884 KVGDLLPHVSSPKIHLQYAKAK------EADGRYKEAVVAYENAKQWQ----SVIRIYLD 933
Query: 65 HENNRA----LFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAM--AL 118
H NN + ++ + A M+ + +L + I+ M N A +
Sbjct: 934 HLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNNEAFTLAQQHNKM 993
Query: 119 ERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVE---LLGKASRLL 164
E +I + D + YQ A FE E+R QA + L G+ SR L
Sbjct: 994 EIYADIIGSEDTTN--EDYQSIALYFEGEKRYLQAGKFFLLCGQYSRAL 1040
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 29.3 bits (64), Expect = 4.7
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123
+ EN A+ E +E++KL +LIE+ E D A LER +
Sbjct: 582 SRENLSAVMLYNPGLEFERQQREELEKLESKRKLIEEME----EKQKSDKAE--LERMQQ 635
Query: 124 LIENVDPEKAVQLYQQTANVFENEERL-RQAVELLGKASRLLVRGRRFDEAALSIQKEKN 182
+E E + Q + + EE L R++ + K LL +F+E L Q+E
Sbjct: 636 EVETQRKETEIVQLQ----IRKQEESLKRRSFHIENKLKDLLAEKEKFEEERLREQQEIE 691
Query: 183 IYKEIENYPTCYK-KTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEG 241
+ K+ + T + + Q L L+ N+ + +E + E A LE +
Sbjct: 692 LQKKRQEEETFLRVQEELQRLKELNNNEKAEKFQIFQELDQLQK-EKDEQYAKLELEKKR 750
Query: 242 YDQQDQDQV 250
++Q+++QV
Sbjct: 751 LEEQEKEQV 759
>gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Homo
sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 4.7
Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 24/149 (16%)
Query: 178 QKEKNIYKEIENYPTCYKKTIAQV-LVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALE 236
Q + +YK E+ + KK + + Y + CV GFNG +DC AL
Sbjct: 264 QASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLTQLCV-------GFNGGKDCTALL 316
Query: 237 QLLEGYDQQDQDQVSDVCN----------SP---LFKYMDNDYAKLGLSLVVPGGGIKKK 283
L Q+ ++ DV N SP L +++ + + L ++ G +K+
Sbjct: 317 HLFHAAVQR---KLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLEAEGSMKQA 373
Query: 284 SPATPQAKPDGVTATAADEEEDEYSGGLC 312
P D YS LC
Sbjct: 374 LGELQARHPQLEAVLMGTRRTDPYSCSLC 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,318,529
Number of Sequences: 37866
Number of extensions: 480524
Number of successful extensions: 1380
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1350
Number of HSP's gapped (non-prelim): 62
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.