Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NAPA Sequence: fasta or formatted (295aa) NCBI GI: 47933379
Description:

N-ethylmaleimide-sensitive factor attachment protein, alpha

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         41           2
 C cysteine            2.7          8           1
 D aspartate           5.8         17           1
 E glutamate           9.5         28           2
 F phenylalanine       4.4         13           2
 G glycine             3.7         11           2
 H histidine           2.4          7           2
 I isoleucine          5.8         17           1
 K lysine              8.8         26           2
 L leucine             8.8         26           2
 M methionine          3.4         10           1
 N asparagine          4.1         12           1
 P proline             1.0          3           1
 Q glutamine           4.7         14           1
 R arginine            2.7          8           1
 S serine              7.1         21           2
 T threonine           3.1          9           2
 V valine              2.7          8           1
 W tryptophan          0.7          2           1
 Y tyrosine            4.7         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-ethylmaleimide-sensitive factor attachment protein... 
NAPB                  0.856   N-ethylmaleimide-sensitive factor attachment protein...
NAPG                  0.062   N-ethylmaleimide-sensitive factor attachment protein,...
WDR19                 0.020   WD repeat domain 19 
DNAJC3                0.009   DnaJ (Hsp40) homolog, subfamily C, member 3 
TTC28                 0.009   tetratricopeptide repeat domain 28 
SH3TC1                0.009   SH3 domain and tetratricopeptide repeats 1 
MYO5B                 0.007   myosin VB 
MYH10                 0.007   myosin, heavy polypeptide 10, non-muscle 
TXLNA                 0.007   taxilin 
TMTC1                 0.007   transmembrane and tetratricopeptide repeat containin...
DYX1C1                0.005   dyslexia susceptibility 1 candidate 1 isoform a [Hom...
RBP3                  0.005   retinol-binding protein 3 precursor 
RYR3                  0.005   ryanodine receptor 3 
ZER1                  0.005   zyg-11 homolog B (C. elegans)-like 
SYCP2                 0.005   synaptonemal complex protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press