Guide to the Human Genome
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Name: PPL Sequence: fasta or formatted (1756aa) NCBI GI: 45439327
Description:

periplakin

Referenced in:

Skin and Related Tissues
Spectrin and Plectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        130           2
 C cysteine            0.6         10           1
 D aspartate           5.4         95           2
 E glutamate          14.2        250           3
 F phenylalanine       1.3         23           1
 G glycine             3.0         53           2
 H histidine           2.2         39           1
 I isoleucine          3.0         52           1
 K lysine              7.6        134           2
 L leucine            12.3        216           3
 M methionine          1.0         17           1
 N asparagine          3.3         58           2
 P proline             2.7         47           2
 Q glutamine           9.3        163           2
 R arginine            8.8        155           3
 S serine              5.6         98           2
 T threonine           3.2         57           2
 V valine              6.3        111           3
 W tryptophan          0.7         12           1
 Y tyrosine            2.1         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   periplakin 
EVPL                  0.240   envoplakin 
PLEC1                 0.115   plectin 1 isoform 11 
PLEC1                 0.115   plectin 1 isoform 10 
PLEC1                 0.115   plectin 1 isoform 8 
PLEC1                 0.115   plectin 1 isoform 7 
PLEC1                 0.115   plectin 1 isoform 6 
PLEC1                 0.115   plectin 1 isoform 3 
PLEC1                 0.115   plectin 1 isoform 2 
PLEC1                 0.115   plectin 1 isoform 1 
DST                   0.103   dystonin isoform 1e precursor 
DST                   0.085   dystonin isoform 4 
DST                   0.085   dystonin isoform 3 
DST                   0.085   dystonin isoform 2 
DST                   0.085   dystonin isoform 1 
DST                   0.085   dystonin isoform 1eA precursor 
DST                   0.077   dystonin isoform 1eB precursor 
MACF1                 0.067   microfilament and actin filament cross-linker protei...
DSP                   0.066   desmoplakin isoform I 
LOC652460             0.065   PREDICTED: similar to plectin 1, partial 
DSP                   0.059   desmoplakin isoform II 
CEP250                0.047   centrosomal protein 2 
TCHH                  0.043   trichohyalin 
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CENPE                 0.040   centromere protein E 
MYH10                 0.040   myosin, heavy polypeptide 10, non-muscle 
MYH9                  0.039   myosin, heavy polypeptide 9, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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