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Search of human proteins with 4505255
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505255 musashi 1 [Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505255 musashi 1 [Homo sapiens] 743 0.0
gi|20373175 musashi 2 isoform a [Homo sapiens] 490 e-139
gi|25121993 musashi 2 isoform b [Homo sapiens] 376 e-104
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 176 4e-44
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 172 5e-43
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 172 5e-43
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 171 1e-42
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 169 3e-42
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 165 5e-41
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 164 9e-41
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 164 1e-40
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 162 4e-40
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 162 4e-40
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 162 6e-40
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 161 7e-40
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 161 7e-40
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 161 1e-39
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 160 2e-39
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 160 2e-39
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 148 6e-36
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 140 2e-33
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 140 2e-33
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 140 2e-33
gi|6678271 TAR DNA binding protein [Homo sapiens] 95 9e-20
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 83 3e-16
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 83 3e-16
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 83 3e-16
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 83 3e-16
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 83 3e-16
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 82 1e-15
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 743 bits (1918), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60
Query: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
Sbjct: 61 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT 120
Query: 121 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
Sbjct: 121 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE 180
Query: 181 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT 240
CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
Sbjct: 181 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT 240
Query: 241 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST 300
YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
Sbjct: 241 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST 300
Query: 301 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG 360
PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
Sbjct: 301 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG 360
Query: 361 YH 362
YH
Sbjct: 361 YH 362
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 490 bits (1261), Expect = e-139
Identities = 249/349 (71%), Positives = 273/349 (78%), Gaps = 35/349 (10%)
Query: 14 DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAG 73
DS HDP KMFIGGLSWQT+ + LR+YF +FGE++EC+VMRDP TKRSRGFGFVTF D A
Sbjct: 15 DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPAS 74
Query: 74 VDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG 133
VDKVL Q HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLS NT VEDVKQYFEQFG
Sbjct: 75 VDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 134
Query: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT 193
KV+DAMLMFDKTTNRHRGFGFVTFE+ED+VEKVCEIHFHEINNKMVECKKAQPKEVM P
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
Query: 194 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL 253
G+ RGR+R +PY MDAFMLG+GMLGYP F AT R Y G AP Y YQFP F
Sbjct: 195 GT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPSYGYQFPGF------- 244
Query: 254 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP 313
P AYGP+AAAA AAA RG+GS+ P+R GGF G SP
Sbjct: 245 ------------PAAAYGPVAAAAVAAA--RGSGSN-----------PARPGGFPGANSP 279
Query: 314 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH 362
GP+A+LYG A+QDSGV +YISAASP P +GFGH + GPLIATAFTNGYH
Sbjct: 280 GPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH 328
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
P A P K+F+GGLS T E +++YF QFG+V++ ++M D T R RGFGFVT
Sbjct: 98 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
Query: 68 FMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
F ++ V+KV HE+++K ++ K +AQPK V
Sbjct: 158 FENEDVVEKVCEIHFHEINNKMVECK-----KAQPKEV 190
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 376 bits (966), Expect = e-104
Identities = 182/226 (80%), Positives = 198/226 (87%), Gaps = 3/226 (1%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
KMFIGGLSWQT+ + LR+YF +FGE++EC+VMRDP TKRSRGFGFVTF D A VDKVL Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLS NT VEDVKQYFEQFGKV+DAML
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
MFDKTTNRHRGFGFVTFE+ED+VEKVCEIHFHEINNKMVECKKAQPKEVM P G+ RGR+
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGT-RGRA 196
Query: 201 RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEF 246
R +PY MDAFMLG+GMLGYP F AT R Y G AP Y YQFP++
Sbjct: 197 RGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPSYGYQFPDY 240
Score = 75.1 bits (183), Expect = 9e-14
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 104 MVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV 163
M + + K+F+GGLS T+ + ++ YF +FG++ + M+M D TT R RGFGFVTF V
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 164 EKVCEIHFHEINNKMVECK-----KAQPKEV 189
+KV HE+++K ++ K +AQPK V
Sbjct: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKMV 102
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
P A P K+F+GGLS T E +++YF QFG+V++ ++M D T R RGFGFVT
Sbjct: 94 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 153
Query: 68 FMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
F ++ V+KV HE+++K ++ K +AQPK V
Sbjct: 154 FENEDVVEKVCEIHFHEINNKMVECK-----KAQPKEV 186
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 176 bits (445), Expect = 4e-44
Identities = 100/247 (40%), Positives = 133/247 (53%), Gaps = 28/247 (11%)
Query: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
D KMF+GGLSW T+++ L++YF +FGEV +C + DP T RSRGFGF+ F D A V+KV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
L Q H LD + IDPK A + P KKIFVGGL+ T E +++YF +FG+++
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT---- 193
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV
Sbjct: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
Query: 194 ----------------GSARGRSRVMPYGMDAFM-LGIG-MLGY-PGFQATTYASRSYTG 234
G G+S+ G + G G GY PG+ Y+ Y G
Sbjct: 243 GGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG 302
Query: 235 LAPGYTY 241
PGY Y
Sbjct: 303 YGPGYDY 309
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 172 bits (435), Expect = 5e-43
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 18/202 (8%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
K+F+GGL W TTQE LR YF Q+GEV +C++M+D T +SRGFGFV F D V VLA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSVNTTVEDVK 126
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
+YF++FG V + ++++D R RGFGF+TFE E V++ +HFH+I K VE K+A+P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 187 KEVMSPT----GSARGRSRVMP 204
++ S G+++ SRV+P
Sbjct: 191 RDSKSQAPGQPGASQWGSRVVP 212
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 172 bits (435), Expect = 5e-43
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 18/202 (8%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
K+F+GGL W TTQE LR YF Q+GEV +C++M+D T +SRGFGFV F D V VLA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSVNTTVEDVK 126
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
+YF++FG V + ++++D R RGFGF+TFE E V++ +HFH+I K VE K+A+P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 187 KEVMSPT----GSARGRSRVMP 204
++ S G+++ SRV+P
Sbjct: 191 RDSKSQAPGQPGASQWGSRVVP 212
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 171 bits (432), Expect = 1e-42
Identities = 98/239 (41%), Positives = 129/239 (53%), Gaps = 20/239 (8%)
Query: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
D KMFIGGLSW T+++ L EY +FGEV +C + DP+T RSRGFGFV F D A VDKV
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
L H+LD K IDPK R K KK+FVGGLS +T+ E +K+YF FG++++
Sbjct: 206 LELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIEN 261
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV-------- 189
L D TN RGF F+T+ E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 262 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQ 321
Query: 190 -------MSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
G RGR R + GY + + ++Y+G GY Y
Sbjct: 322 KGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG-GYDY 379
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 169 bits (429), Expect = 3e-42
Identities = 83/172 (48%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
D KMF+GGLSW T+++ L++YF +FGEV +C + DP T RSRGFGF+ F D A V+KV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
L Q H LD + IDPK A + P KKIFVGGL+ T E +++YF +FG+++
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV
Sbjct: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEV 234
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 165 bits (418), Expect = 5e-41
Identities = 99/239 (41%), Positives = 127/239 (53%), Gaps = 19/239 (7%)
Query: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
D KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
+ Q H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+
Sbjct: 136 MDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 191
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP----- 192
L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 192 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG 251
Query: 193 -----TGSARGR----SRVMPYGMDAFM-LGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
G ARGR S+ G + G G GY Y YTG Y Y
Sbjct: 252 SRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGY 310
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
G SPD+P +E +REYFG FGEV+ + D T + RGF F+TF
Sbjct: 168 GGLSPDTP----------------EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
++ V K++ + H + + KVA +
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 241
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 164 bits (416), Expect = 9e-41
Identities = 98/236 (41%), Positives = 126/236 (53%), Gaps = 19/236 (8%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV+ Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+ L
Sbjct: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP-------- 192
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
Query: 193 --TGSARGR----SRVMPYGMDAFM-LGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
G ARGR S+ G + G G GY Y YTG Y Y
Sbjct: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGY 329
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
G SPD+P +E +REYFG FGEV+ + D T + RGF F+TF
Sbjct: 187 GGLSPDTP----------------EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
++ V K++ + H + + KVA +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 164 bits (415), Expect = 1e-40
Identities = 88/212 (41%), Positives = 124/212 (58%), Gaps = 18/212 (8%)
Query: 6 PQPGLASPDSP----------HDPC------KMFIGGLSWQTTQEGLREYFGQFGEVKEC 49
P PG PDS HDP K+FIGGLS++TT + LRE+F ++G + +C
Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 50 LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTR 107
+VMRDP TKRSRGFGFVT+ VD + H++D + ++PK A R +P
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 124
Query: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
KKIFVGG+ +T +++ YFE++GK++ +M D+ + + RGF FVTF+ D V+K+
Sbjct: 125 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Query: 168 EIHFHEINNKMVECKKAQPKEVMSPTGSARGR 199
+H IN E KKA K+ M GS RGR
Sbjct: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGR 216
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 162 bits (410), Expect = 4e-40
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 3/189 (1%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
K+FIGGLS++TT+E LR Y+ Q+G++ +C+VMRDP +KRSRGFGFVTF A VD +A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 81 SRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDA 138
H +D + ++PK A R +P KK+FVGG+ +T ++ YFE++GK+D
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 139 MLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR- 197
++ D+ + + RGFGFVTF+ D V+K+ +H IN E +KA ++ M S+R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 198 GRSRVMPYG 206
GR +G
Sbjct: 202 GRGGNFGFG 210
Score = 75.1 bits (183), Expect = 9e-14
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
+K+F+GGLS TT E ++ Y+EQ+GK+ D ++M D + R RGFGFVTF S V+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 IHFHEINNKMVECKKAQPKEVMSPTGS 195
H I+ ++VE K+A +E G+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGA 107
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 162 bits (410), Expect = 4e-40
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 3/189 (1%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
K+FIGGLS++TT+E LR Y+ Q+G++ +C+VMRDP +KRSRGFGFVTF A VD +A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 81 SRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDA 138
H +D + ++PK A R +P KK+FVGG+ +T ++ YFE++GK+D
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 139 MLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR- 197
++ D+ + + RGFGFVTF+ D V+K+ +H IN E +KA ++ M S+R
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 198 GRSRVMPYG 206
GR +G
Sbjct: 190 GRGGNFGFG 198
Score = 75.1 bits (183), Expect = 9e-14
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
+K+F+GGLS TT E ++ Y+EQ+GK+ D ++M D + R RGFGFVTF S V+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 169 IHFHEINNKMVECKKAQPKEVMSPTGS 195
H I+ ++VE K+A +E G+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGA 95
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 162 bits (409), Expect = 6e-40
Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
D KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
+ Q H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+
Sbjct: 136 MDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 191
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 192 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Score = 79.0 bits (193), Expect = 6e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
K+F+GGLS +TT +D+K YF +FG+V D L D T R RGFGFV F+ + V+KV +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 170 HFHEINNKMVECKKAQPKEVMSP 192
H++N K+++ K+A+ + P
Sbjct: 139 KEHKLNGKVIDPKRAKAMKTKEP 161
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
G SPD+P +E +REYFG FGEV+ + D T + RGF F+TF
Sbjct: 168 GGLSPDTP----------------EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
++ V K++ + H + + KVA +
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 241
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 161 bits (408), Expect = 7e-40
Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 13/241 (5%)
Query: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
ASP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 5 ASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
VD + + H++D + ++PK A R +P KKIFVGG+ +T ++ Y
Sbjct: 65 VEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
Query: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK- 187
FEQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H + E +KA PK
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
Query: 188 EVMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPG 238
E+ S + S RGR + G D F G G GF + Y G G
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC-GGGGYGGSGDG 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
Score = 75.5 bits (184), Expect = 7e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
+ A PK + +K+F+GGLS TT E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
+ + V+ H+++ ++VE K+A +E
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSRE 93
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 161 bits (408), Expect = 7e-40
Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 13/241 (5%)
Query: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
ASP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 5 ASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
VD + + H++D + ++PK A R +P KKIFVGG+ +T ++ Y
Sbjct: 65 VEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124
Query: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK- 187
FEQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H + E +KA PK
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
Query: 188 EVMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPG 238
E+ S + S RGR + G D F G G GF + Y G G
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC-GGGGYGGSGDG 243
Query: 239 Y 239
Y
Sbjct: 244 Y 244
Score = 75.5 bits (184), Expect = 7e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
+ A PK + +K+F+GGLS TT E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
+ + V+ H+++ ++VE K+A +E
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSRE 93
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 161 bits (407), Expect = 1e-39
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 4/168 (2%)
Query: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV+ Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+ L
Sbjct: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 80.5 bits (197), Expect = 2e-15
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 97 PRRAQPKMVTRTK-KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155
PR ++ R + K+F+GGLS +TT +D+K YF +FG+V D L D T R RGFGFV
Sbjct: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Query: 156 TFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP 192
F+ + V+KV + H++N K+++ K+A+ + P
Sbjct: 144 LFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
G SPD+P +E +REYFG FGEV+ + D T + RGF F+TF
Sbjct: 187 GGLSPDTP----------------EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
++ V K++ + H + + KVA +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 160 bits (405), Expect = 2e-39
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 13/240 (5%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
SP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
VD + H++D + ++PK A R +P KKIFVGG+ +T ++ YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-E 188
EQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H +N E +KA K E
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 189 VMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
+ S + S RGRS + G D F G G GF + Y G GY
Sbjct: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR-GGGGYGGSGDGY 244
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 160 bits (405), Expect = 2e-39
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 13/240 (5%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
SP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
VD + H++D + ++PK A R +P KKIFVGG+ +T ++ YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-E 188
EQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H +N E +KA K E
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 189 VMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
+ S + S RGRS + G D F G G GF + Y G GY
Sbjct: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR-GGGGYGGSGDGY 244
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 148 bits (374), Expect = 6e-36
Identities = 77/181 (42%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
Query: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
CK+FIGGL+ QT++ GLR +F FG + +C+V+ +P TKRSR FGFVT+ + D +A
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 80 QSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
S H +D T++ K A R A+P + KK+FVGGL + D+ ++F QFG V+
Sbjct: 67 ASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEK 126
Query: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR 197
A ++ DK + + RGFGFV F++ D +K + FH I VE KKA PKE + G
Sbjct: 127 AEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGG 186
Query: 198 G 198
G
Sbjct: 187 G 187
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 2e-33
Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 6/234 (2%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
SP P K+FIGGL ++T+ E LR + Q+G + EC+VMRDP T RSRGFGFV ++
Sbjct: 6 SPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTV 65
Query: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
VD + H++ + ++PK A R +P KKIFVGG+ +T ++ Y+
Sbjct: 66 EEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYY 125
Query: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
EQ+GK + +M D+ + + R F FVTF++ D +K+ +H +N E +KA K+
Sbjct: 126 EQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQK 185
Query: 190 M-SPTGSARGRSRVMPY--GMDAFMLGIGMLGYPG-FQATTYASRSYTGLAPGY 239
M S S R RS + G G G+ G F S+ G A GY
Sbjct: 186 MASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGY 239
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 2e-33
Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 18/240 (7%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
SP P K+FIGGL ++T+ E LR + Q+G + EC+VMRDP T RSRGFGFV ++
Sbjct: 6 SPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTV 65
Query: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
VD + H++ + ++PK A R +P KKIFVGG+ +T ++ Y+
Sbjct: 66 EEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYY 125
Query: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
EQ+GK + +M D+ + + R F FVTF++ D +K+ +H +N E +KA K+
Sbjct: 126 EQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQK 185
Query: 190 M-SPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
M S S R RS + G D F G G GF S+ G A GY
Sbjct: 186 MASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGF------GGSHGGSADGY 239
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 2e-33
Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 18/240 (7%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
SP P K+FIGGL ++T+ E LR + Q+G + EC+VMRDP T RSRGFGFV ++
Sbjct: 6 SPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTV 65
Query: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
VD + H++ + ++PK A R +P KKIFVGG+ +T ++ Y+
Sbjct: 66 EEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYY 125
Query: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
EQ+GK + +M D+ + + R F FVTF++ D +K+ +H +N E +KA K+
Sbjct: 126 EQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQK 185
Query: 190 M-SPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
M S S R RS + G D F G G GF S+ G A GY
Sbjct: 186 MASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGF------GGSHGGSADGY 239
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 95.1 bits (235), Expect = 9e-20
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 7/146 (4%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+ + GL W+TT++ L+EYF FGEV V +D T S+GFGFV F + KV++Q
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ- 164
Query: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
RH +D + D K+ +++Q + + R++K+FVG + + T ++++++F Q+G V D +
Sbjct: 165 RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI- 222
Query: 142 FDKTTNRHRGFGFVTFESEDIVEKVC 167
R F FVTF + I + +C
Sbjct: 223 ----PKPFRAFAFVTFADDQIAQSLC 244
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 53 RDPLTKRSRGFGFVTFM---DQAGVDKVLAQSRHELDSKT-IDPKVAFPRRAQPKMVTRT 108
R+P+++ RG V + AG ++ + D+K +D A + V +T
Sbjct: 44 RNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKT 103
Query: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
+ V GL TT +D+K+YF FG+V + D T +GFGFV F + KV
Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163
Query: 169 IHFHEINNKMVECKKAQPKE 188
H I+ + +CK K+
Sbjct: 164 -QRHMIDGRWCDCKLPNSKQ 182
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
S D P K+F+G + T++ LRE+F Q+G+V + + K R F FVTF D
Sbjct: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD 236
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63
+ P P + + + L TQE R FG GE++ C ++RD +T +S G+
Sbjct: 30 NCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 89
Query: 64 GFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTV 122
GFV ++D +K + + L +KTI A P A R ++V GL T
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQ 145
Query: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
++++Q F Q+G++ + ++ D+ T RG GF+ F+
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+++ GL TQ+ L + F Q+G + ++ D +T SRG GF+ F + ++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 RHELDSKTIDP 92
+ S +P
Sbjct: 194 NGQKPSGATEP 204
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV LS ++ + Q F FG V++ ++ D TN+ +GFGFVT + D
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
+F+ LS + + L + FG FG V V+RD T + +GFGFVT
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 344
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63
+ P P + + + L TQE R FG GE++ C ++RD +T +S G+
Sbjct: 33 NCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 92
Query: 64 GFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTV 122
GFV ++D +K + + L +KTI A P A R ++V GL T
Sbjct: 93 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQ 148
Query: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
++++Q F Q+G++ + ++ D+ T RG GF+ F+
Sbjct: 149 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 184
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+++ GL TQ+ L + F Q+G + ++ D +T SRG GF+ F + ++ +
Sbjct: 137 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 196
Query: 82 RHELDSKTIDP 92
+ S +P
Sbjct: 197 NGQKPSGATEP 207
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV LS ++ + Q F FG V++ ++ D TN+ +GFGFVT + D
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 338
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
+F+ LS + + L + FG FG V V+RD T + +GFGFVT
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 333
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63
+ P P + + + L TQE R FG GE++ C ++RD +T +S G+
Sbjct: 30 NCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 89
Query: 64 GFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTV 122
GFV ++D +K + + L +KTI A P A R ++V GL T
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQ 145
Query: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
++++Q F Q+G++ + ++ D+ T RG GF+ F+
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+++ GL TQ+ L + F Q+G + ++ D +T SRG GF+ F + ++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 RHELDSKTIDP 92
+ S +P
Sbjct: 194 NGQKPSGATEP 204
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV LS ++ + Q F FG V++ ++ D TN+ +GFGFVT + D
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 335
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
+F+ LS + + L + FG FG V V+RD T + +GFGFVT
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 330
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63
+ P P + + + L TQE R FG GE++ C ++RD +T +S G+
Sbjct: 47 NCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 106
Query: 64 GFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTV 122
GFV ++D +K + + L +KTI A P A R ++V GL T
Sbjct: 107 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQ 162
Query: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
++++Q F Q+G++ + ++ D+ T RG GF+ F+
Sbjct: 163 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 198
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+++ GL TQ+ L + F Q+G + ++ D +T SRG GF+ F + ++ +
Sbjct: 151 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 210
Query: 82 RHELDSKTIDP 92
+ S +P
Sbjct: 211 NGQKPSGATEP 221
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV LS ++ + Q F FG V++ ++ D TN+ +GFGFVT + D
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 352
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
+F+ LS + + L + FG FG V V+RD T + +GFGFVT
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 347
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 83.2 bits (204), Expect = 3e-16
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63
+ P P + + + L TQE R FG GE++ C ++RD +T +S G+
Sbjct: 30 NCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 89
Query: 64 GFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTV 122
GFV ++D +K + + L +KTI A P A R ++V GL T
Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQ 145
Query: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
++++Q F Q+G++ + ++ D+ T RG GF+ F+
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
+++ GL TQ+ L + F Q+G + ++ D +T SRG GF+ F + ++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 RHELDSKTIDP 92
+ S +P
Sbjct: 194 NGQKPSGATEP 204
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV LS ++ + Q F FG V++ ++ D TN+ +GFGFVT + D
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 335
Score = 37.4 bits (85), Expect = 0.021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
+F+ LS + + L + FG FG V V+RD T + +GFGFVT
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 330
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 81.6 bits (200), Expect = 1e-15
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 80
+ + L TQE L+ FG GE++ C ++RD +T +S G+GFV ++D +K +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
+ L +KTI A P A R ++V GL T ++++Q F Q+G++ + +
Sbjct: 101 NGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 141 MFDKTTNRHRGFGFVTFE 158
+ D+ T RG GF+ F+
Sbjct: 157 LVDQVTGISRGVGFIRFD 174
Score = 37.4 bits (85), Expect = 0.021
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
G+ P P +F+ L+ + L + FG FG V V+RD T + +GFGFVT
Sbjct: 265 GINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
Score = 35.0 bits (79), Expect = 0.10
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
IFV L+ + + Q F FG V + ++ D TN+ +GFGFVT + D
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,813,817
Number of Sequences: 37866
Number of extensions: 817130
Number of successful extensions: 4755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 3624
Number of HSP's gapped (non-prelim): 1004
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.