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Search of human proteins with 4504969
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens]
(375 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens] 781 0.0
gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens] 781 0.0
gi|4504971 LIM domain binding 2 isoform a [Homo sapiens] 593 e-170
gi|195546926 LIM domain binding 2 isoform b [Homo sapiens] 460 e-129
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 33 0.42
gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens] 33 0.55
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 32 0.93
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.93
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 32 1.2
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 31 1.6
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 31 1.6
gi|153792074 proline rich 12 [Homo sapiens] 31 2.1
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 30 2.7
gi|225735619 mesoderm induction early response 1 isoform i [Homo... 30 2.7
gi|225735617 mesoderm induction early response 1 isoform h [Homo... 30 2.7
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 30 2.7
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 30 2.7
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 30 2.7
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 30 2.7
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 30 2.7
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 30 2.7
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 30 2.7
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 30 2.7
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 30 2.7
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 30 2.7
gi|161016767 mucin 21 [Homo sapiens] 30 2.7
gi|31044440 K+ channel tetramerization protein [Homo sapiens] 30 2.7
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 2.7
gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo sa... 30 3.5
gi|111154099 Rho GTPase activating protein 24 isoform 2 [Homo sa... 30 3.5
>gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens]
Length = 411
Score = 781 bits (2018), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 60
MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
Sbjct: 37 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 96
Query: 61 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 120
FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
Sbjct: 97 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 156
Query: 121 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 180
LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
Sbjct: 157 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 216
Query: 181 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 240
AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
Sbjct: 217 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 276
Query: 241 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 300
KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
Sbjct: 277 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 336
Query: 301 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 360
VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
Sbjct: 337 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 396
Query: 361 SQESKSENPTSQASQ 375
SQESKSENPTSQASQ
Sbjct: 397 SQESKSENPTSQASQ 411
>gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens]
Length = 375
Score = 781 bits (2018), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 60
MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
Sbjct: 1 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 60
Query: 61 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 120
FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
Sbjct: 61 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 120
Query: 121 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 180
LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
Sbjct: 121 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 180
Query: 181 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 240
AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
Sbjct: 181 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 240
Query: 241 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 300
KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
Sbjct: 241 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 300
Query: 301 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 360
VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
Sbjct: 301 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 360
Query: 361 SQESKSENPTSQASQ 375
SQESKSENPTSQASQ
Sbjct: 361 SQESKSENPTSQASQ 375
>gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
Length = 373
Score = 593 bits (1529), Expect = e-170
Identities = 281/358 (78%), Positives = 320/358 (89%), Gaps = 1/358 (0%)
Query: 19 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 78
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
Query: 79 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 138
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
Query: 139 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 198
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
Query: 199 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 258
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
Query: 259 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 317
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVPDVMVVGEPTLMGGEFGDE
Sbjct: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDE 315
Query: 318 DERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
DERLITRLENTQ+DAANG+DDE+ FNNSPALG NSPWNSKPP++QE+KSENP QASQ
Sbjct: 316 DERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 373
>gi|195546926 LIM domain binding 2 isoform b [Homo sapiens]
Length = 331
Score = 460 bits (1183), Expect = e-129
Identities = 219/299 (73%), Positives = 255/299 (85%), Gaps = 1/299 (0%)
Query: 19 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 78
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
Query: 79 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 138
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
Query: 139 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 198
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
Query: 199 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 258
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
Query: 259 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGD 316
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVP + + +L G GD
Sbjct: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPNCSLNPGRDGD 314
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 33.1 bits (74), Expect = 0.42
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 163 FSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSR 222
++I H + P I+ DPQ+ +Q K + N+ R LE ++ L S
Sbjct: 422 YTILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVENTKFGKERHQWSLEGVKRLES- 480
Query: 223 HKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSN 282
S R L+ ++ ++ APP ++ K R S S MS G + S
Sbjct: 481 ----SWHGRPTLE----KEREKNSAPP----HRRAQKVMIRSSSDSSYMSGSPGGSPGSG 528
Query: 283 SKKKSPASTFALSSQVPDVMVVGEPTLM 310
S +K P+S +S+ P + + EP ++
Sbjct: 529 SAEK-PSSDVDISTHSPSLPLAREPVVL 555
>gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens]
Length = 228
Score = 32.7 bits (73), Expect = 0.55
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 261 RKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMG 311
+KR S SSGGG ++ KKK+ AS+FA + P M+V P G
Sbjct: 21 KKRPASPSHNGSSGGGY--GASKKKKASASSFAQTCLSPSTMIVRPPQPRG 69
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 32.0 bits (71), Expect = 0.93
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 247 APPAEPTRQQ--PSKRRKRKM------SGGSTMSS---GGGNTNNSNSKKKSPASTFALS 295
AP PT+QQ P+KR K+ + GG ++ GG + N P ST
Sbjct: 122 APIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPP 181
Query: 296 SQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWN 355
Q+P + P + G E L +T AA+ E+ P L + SP
Sbjct: 182 QQLPSQVPEHSPVVYGTV---ESAHLAA---STPVTAASDQKQEEKPKPDPVLKSPSPVL 235
Query: 356 SKPPSSQESKSENPTSQAS 374
S ++ + E TS+ +
Sbjct: 236 RLVLSGEKKEQEGQTSETT 254
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 0.93
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 248 PPAEPTRQQPS---------KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQV 298
PPA QQPS +RR S S+ SS ++++S+S +S+ + S +
Sbjct: 2509 PPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Query: 299 P-----DVMVVGEPTLMGGEFGDEDE-------RLITRLENTQFDAANGIDDEDSFNNSP 346
P + V PT E E + R ++ +++ S ++S
Sbjct: 2569 PVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSS 2628
Query: 347 ALGANSPWNSKPPSSQESKSENPTSQASQ 375
+ ++S +S SS S S +P Q
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSPSPAKPGPQ 2657
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 242 WQRMVAPPAE--PTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNS 283
+ + VAPPA P+ QP + GG S GGG++++SNS
Sbjct: 371 YAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNS 414
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 247 APPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKS 287
AP AE +Q ++RR R S S+ SS ++++S+S S
Sbjct: 172 APGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSS 212
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 31.2 bits (69), Expect = 1.6
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 248 PPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSS-------QVPD 300
PP P R RRK++ +G +S GG + S K+ + AL + ++P+
Sbjct: 368 PPGTPRRTGKGNRRKKRAAGRGALSRGGDSAPLSPGDKEDASHQEALGNLPSPSEHKLPE 427
Query: 301 VMVVGEPTLMGGEFGDEDERLITRLE-NTQFDAANGIDDEDSFN---NSPAL-------G 349
+V E G+ E + L T E Q A G +E + P L G
Sbjct: 428 CHLVKEEYEGSGKPESEPKELKTAGEKEPQLSEACGPTEEGAGERELEGPGLLCMAGHTG 487
Query: 350 ANSPWNSKP----PSSQESKSENPTSQA 373
P + P + QE K +N +A
Sbjct: 488 PEGPLSDTPTPPLETVQEGKGDNIPEEA 515
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 2.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 248 PPAEPTRQQ----PSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVP 299
P A PT+ + P KR+K G ++GGG +S+ + SP + VP
Sbjct: 1782 PKARPTKVKAEPPPKKRKKWLKEAGGNATAGGGPPGSSSDSESSPGAPSEDERAVP 1837
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|225735619 mesoderm induction early response 1 isoform i [Homo
sapiens]
Length = 370
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 17 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 74
>gi|225735617 mesoderm induction early response 1 isoform h [Homo
sapiens]
Length = 485
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 53 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 110
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 80 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 137
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 133 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 190
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 80 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 137
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 133 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 190
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 320 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 375
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 248 PPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVP--DVMVVG 305
PP EP S S S+ SS +++S+S SP A+SS V D +
Sbjct: 834 PPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEAS 893
Query: 306 EPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNS 345
P + + E+E L R E Q A + +++FN +
Sbjct: 894 LPMISFKQEELENEGLKPR-EEPQSAAEQDVVVQETFNKN 932
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 248 PPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVP--DVMVVG 305
PP EP S S S+ SS +++S+S SP A+SS V D +
Sbjct: 1035 PPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEAS 1094
Query: 306 EPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNS 345
P + + E+E L R E Q A + +++FN +
Sbjct: 1095 LPMISFKQEELENEGLKPR-EEPQSAAEQDVVVQETFNKN 1133
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 248 PPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVP--DVMVVG 305
PP EP S S S+ SS +++S+S SP A+SS V D +
Sbjct: 1035 PPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEAS 1094
Query: 306 EPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNS 345
P + + E+E L R E Q A + +++FN +
Sbjct: 1095 LPMISFKQEELENEGLKPR-EEPQSAAEQDVVVQETFNKN 1133
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 30.4 bits (67), Expect = 2.7
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 266 SGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRL 325
S T S+G G NS S S ++ A +S+ G T E T
Sbjct: 213 SESRTTSNGAGTATNSESSTTSSGASTATNSE-SSTPSSGAGTATNSESSTTSSGAGTAT 271
Query: 326 ENTQFDAANGIDD-EDSFNNSPALGANSPWNSKPPSSQESKSENPTSQAS 374
+ ++GI +S +++P+ GAN+ NS+ ++ + S +S
Sbjct: 272 NSESSTVSSGISTVTNSESSTPSSGANTATNSESSTTSSGANTATNSDSS 321
Score = 29.3 bits (64), Expect = 6.0
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 266 SGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRL 325
S ST SSG NS+S S ++ A +S+ G T E R T
Sbjct: 138 SDSSTTSSGASTATNSDSSTTSSEASTATNSE-SSTTSSGASTATNSESSTVSSRASTAT 196
Query: 326 ENTQFDAANGIDD-EDSFNNSPALGANSPWNSKPPSSQESKSENPTSQAS 374
+ ++G +S + + + GA + NS+ ++ S S++S
Sbjct: 197 NSESSTTSSGASTATNSESRTTSNGAGTATNSESSTTSSGASTATNSESS 246
>gi|31044440 K+ channel tetramerization protein [Homo sapiens]
Length = 475
Score = 30.4 bits (67), Expect = 2.7
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 221 SRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNN 280
S H+ C++ Q V + + +PS R +K S ++SS G ++ N
Sbjct: 74 SSHERTESQLTPCIRNVTSPTRQHHVEREKDHSSSRPSSPRPQKASPNGSISSAGNSSRN 133
Query: 281 SNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF 330
S S +S+ +++ V E G ER+ ++NT+F
Sbjct: 134 S-----SQSSSDGSCKTAGEMVFVYENAKEGARNIRTSERVTLIVDNTRF 178
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 2.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 243 QRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPAST 291
+RM PP + P +RR+R + S SS ++ + + KK P T
Sbjct: 330 RRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRT 378
>gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo
sapiens]
Length = 653
Score = 30.0 bits (66), Expect = 3.5
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 16/143 (11%)
Query: 237 CLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSS 296
CLF K + + P + ++K M G + NT +S S++ S + S
Sbjct: 232 CLFPKDAELQSKPQDGVSNNNEIQKKATM--GQLQNKENNNTKDSPSRQCSWDKS---ES 286
Query: 297 QVPDVMVVGEPTLMGGEFGDEDERLITRLE-----------NTQFDAANGIDDEDSFNNS 345
M G PT + G + + + +L+ N F+ +GI SF++S
Sbjct: 287 PQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSS 346
Query: 346 PALGANSPWNSKPPSSQESKSEN 368
A G + S Q +S +
Sbjct: 347 NAEGLEKTQTTPNGSLQARRSSS 369
>gi|111154099 Rho GTPase activating protein 24 isoform 2 [Homo
sapiens]
Length = 655
Score = 30.0 bits (66), Expect = 3.5
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 16/143 (11%)
Query: 237 CLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSS 296
CLF K + + P + ++K M G + NT +S S++ S + S
Sbjct: 234 CLFPKDAELQSKPQDGVSNNNEIQKKATM--GQLQNKENNNTKDSPSRQCSWDKS---ES 288
Query: 297 QVPDVMVVGEPTLMGGEFGDEDERLITRLE-----------NTQFDAANGIDDEDSFNNS 345
M G PT + G + + + +L+ N F+ +GI SF++S
Sbjct: 289 PQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSS 348
Query: 346 PALGANSPWNSKPPSSQESKSEN 368
A G + S Q +S +
Sbjct: 349 NAEGLEKTQTTPNGSLQARRSSS 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,347,002
Number of Sequences: 37866
Number of extensions: 769904
Number of successful extensions: 2793
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2743
Number of HSP's gapped (non-prelim): 73
length of query: 375
length of database: 18,247,518
effective HSP length: 104
effective length of query: 271
effective length of database: 14,309,454
effective search space: 3877862034
effective search space used: 3877862034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.