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Search of human proteins with 4504567
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504567 interferon regulatory factor 8 [Homo sapiens]
(426 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 882 0.0
gi|167555104 interferon regulatory factor 4 [Homo sapiens] 302 3e-82
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 216 3e-56
gi|5453700 interferon regulatory factor 6 [Homo sapiens] 206 3e-53
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 200 2e-51
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 200 2e-51
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 200 2e-51
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 197 2e-50
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 196 3e-50
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 196 3e-50
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 196 3e-50
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 129 7e-30
gi|4504721 interferon regulatory factor 1 [Homo sapiens] 118 1e-26
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 117 2e-26
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 89 8e-18
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 89 8e-18
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 89 8e-18
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 57 2e-08
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 57 2e-08
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 57 2e-08
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 32 1.4
gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens] 31 1.9
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] 31 2.4
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi... 31 2.4
gi|25777608 NLR family member X1 isoform 1 [Homo sapiens] 30 4.2
gi|25777610 NLR family member X1 isoform 2 [Homo sapiens] 30 4.2
gi|157364934 fibrosin [Homo sapiens] 30 4.2
gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor ... 30 5.5
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 30 5.5
gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4 ... 29 7.1
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 882 bits (2279), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW 60
MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW
Sbjct: 1 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW 60
Query: 61 AVFKGKFKEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKC 120
AVFKGKFKEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKC
Sbjct: 61 AVFKGKFKEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKC 120
Query: 121 KLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLPDWWAQ 180
KLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLPDWWAQ
Sbjct: 121 KLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLPDWWAQ 180
Query: 181 QPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTK 240
QPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTK
Sbjct: 181 QPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTK 240
Query: 241 LYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCS 300
LYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCS
Sbjct: 241 LYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCS 300
Query: 301 GNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDGRVVLCFGEEFPDMAPL 360
GNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDGRVVLCFGEEFPDMAPL
Sbjct: 301 GNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDGRVVLCFGEEFPDMAPL 360
Query: 361 RSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQAPEEPPPDQVFRMFPDICASHQRSFFRE 420
RSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQAPEEPPPDQVFRMFPDICASHQRSFFRE
Sbjct: 361 RSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQAPEEPPPDQVFRMFPDICASHQRSFFRE 420
Query: 421 NQQITV 426
NQQITV
Sbjct: 421 NQQITV 426
>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
Length = 451
Score = 302 bits (774), Expect = 3e-82
Identities = 181/415 (43%), Positives = 233/415 (56%), Gaps = 46/415 (11%)
Query: 6 GGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKG 65
G +LRQWLI+QIDS YPGL+WENEEKS+FRIPWKHAGKQDYN+E DA++FKAWA+FKG
Sbjct: 20 GNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKG 79
Query: 66 KFKEG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGV 124
KF+EG DK +P TWKTRLRCALNKS DFEE+ +RSQLDIS+PYKVYRIVPE +K +
Sbjct: 80 KFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQL 139
Query: 125 ATAGCVNEVTE--------MECGRSEIDELIKEPSVDDYMGMIKRSPSPP---------- 166
++ ++ + P + + P P
Sbjct: 140 TLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRDYVPDQPHPEIPYQCPMTFG 199
Query: 167 --------EACRS--QLLPDWWAQQP----STGVPLVTGYTTYDAHHSAFSQMVISFYYG 212
AC + Q+ ++A P + GVP + +A + ++ I YY
Sbjct: 200 PRGHHWQGPACENGCQVTGTFYACAPPESQAPGVPTEPSIRSAEALAFSDCRLHICLYYR 259
Query: 213 GKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFP-PADAIPSERQRQVTRKLF 271
LV + TT+ PEGCR+S Y L+ V FP P D QR+ KL
Sbjct: 260 EILVKELTTSSPEGCRISHGH-------TYDASNLDQVLFPYPED----NGQRKNIEKLL 308
Query: 272 GHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFREL 331
HLERGV+L + G++ KRLCQ R++ G +C RPNKLERD+ ++FDT QF EL
Sbjct: 309 SHLERGVVLWMAPDGLYAKRLCQSRIYWDGPLALCNDRPNKLERDQTCKLFDTQQFLSEL 368
Query: 332 QQFYNSQGRLPDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAEEAGKSCG 386
Q F + LP +V LCFGEEFPD R KLI +E L RQL A ++ G
Sbjct: 369 QAFAHHGRSLPRFQVTLCFGEEFPDPQRQR-KLITAHVEPLLARQLYYFAQQNSG 422
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 216 bits (550), Expect = 3e-56
Identities = 127/386 (32%), Positives = 203/386 (52%), Gaps = 27/386 (6%)
Query: 8 RRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF 67
R+LR W++EQ++S +PG+ W++ K+MFRIPWKHAGKQD+ ++ DA+ FKAWA+FKGK+
Sbjct: 10 RKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY 69
Query: 68 KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGVATA 127
KEGD PA WKTRLRCALNKS +F+EV +R ++D++EPYKVY+++P + G
Sbjct: 70 KEGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQPGTQKV 129
Query: 128 GCVNEVTEMECGRSEIDELIK----EPSVDDYMGMIKRSPSPPEACRSQLLPDWWAQQPS 183
+ + + R E ++ ++ PSV + + A S + + P
Sbjct: 130 PSKRQHSSVSSERKEEEDAMQNCTLSPSVLQDSLNNEEEGASGGAVHSDIGSSSSSSSPE 189
Query: 184 TGVPLVTGYTTYDAHHSAFS---------QMVISFYYGGKLVGQATTTCPEGCRLSLSQP 234
T + + ++++F Y G++VG+A + CRL
Sbjct: 190 PQEVTDTTEAPFQGDQRSLEFLLPPEPDYSLLLTFIYNGRVVGEAQVQSLD-CRLVAEPS 248
Query: 235 GLPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQ 294
G +E V FP + + T++L LERG+L+ S+ +G+FV+RLC
Sbjct: 249 G-------SESSMEQVLFPKPGPL------EPTQRLLSQLERGILVASNPRGLFVQRLCP 295
Query: 295 GRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDGRVVLCFGEEF 354
+ + P+ L +E V++F T+ F R+L +++ G P +V L F EE
Sbjct: 296 IPISWNAPQAPPGPGPHLLPSNECVELFRTAYFCRDLVRYFQGLGPPPKFQVTLNFWEES 355
Query: 355 PDMAPLRSKLILVQIEQLYVRQLAEE 380
+ LI V++EQ + R L E+
Sbjct: 356 HGSSHTPQNLITVKMEQAFARYLLEQ 381
>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
Length = 467
Score = 206 bits (524), Expect = 3e-53
Identities = 141/415 (33%), Positives = 212/415 (51%), Gaps = 37/415 (8%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q+DS +YPGLIW + + F+IPWKHA + QE + +IFKAWAV GK++
Sbjct: 9 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 68
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP-EEEQKCKLGVAT 126
EG D +PA WK +LRCALNKS +F + D ++ P K+Y++ + Q + +
Sbjct: 69 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSIINPGS 128
Query: 127 AGCV------NEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSP--------------- 165
G N+V E E E+D+ + D + + SP
Sbjct: 129 TGSAPWDEKDNDVDE-EDEEDELDQSQHHVPIQDTFPFLNINGSPMAPASVGNCSVGNCS 187
Query: 166 PEACRSQLLPDWWAQQPSTGVPLVTGYTTYDAHHSA--FSQMVISFYYGGKLVGQA-TTT 222
PEA + P + P+ Y++ + S+ + + I F Y GK GQ T +
Sbjct: 188 PEAVWPKTEP---LEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVS 244
Query: 223 CPEGCRLSLSQPG-LPG-TKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLL 280
P+GCRL G +P +L+GP LE V+FP + I +E+Q+ T KL ++RG++L
Sbjct: 245 NPQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLIL 304
Query: 281 HSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQ-G 339
S ++ RLCQ +V+ SG PN +ER + V++F F +L Q
Sbjct: 305 EVSGHAIYAIRLCQCKVYWSGPCAPSLVAPNLIERQKKVKLFCLETFLSDLIAHQKGQIE 364
Query: 340 RLPDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE----EAGKSCGAGSV 390
+ P + LCFGEE+PD PL KLILVQ+ + R + E + +S +GSV
Sbjct: 365 KQPPFEIYLCFGEEWPDGKPLERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSV 419
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 200 bits (508), Expect = 2e-51
Identities = 148/410 (36%), Positives = 197/410 (48%), Gaps = 46/410 (11%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV--------DDYMGMIKRSPSP----- 165
AG E E E R + E +K P +G PSP
Sbjct: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPP 194
Query: 166 --PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKL 215
P R L LP A P G L+ H + + I F Y G+
Sbjct: 195 GNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDLEIKFQYRGRP 250
Query: 216 VGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSERQRQVTRKLF 271
T + P GCRL SQ L T +L+GP LE VRFP + IPS++QR T +L
Sbjct: 251 PRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLL 308
Query: 272 GHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQVFDTSQFFRE 330
L+RG++L Q ++ RLCQ +VF SG A PN ++R+ ++F F E
Sbjct: 309 DVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNE 368
Query: 331 LQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
L F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 369 LILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 418
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 200 bits (508), Expect = 2e-51
Identities = 148/410 (36%), Positives = 197/410 (48%), Gaps = 46/410 (11%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV--------DDYMGMIKRSPSP----- 165
AG E E E R + E +K P +G PSP
Sbjct: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPP 194
Query: 166 --PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKL 215
P R L LP A P G L+ H + + I F Y G+
Sbjct: 195 GNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDLEIKFQYRGRP 250
Query: 216 VGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSERQRQVTRKLF 271
T + P GCRL SQ L T +L+GP LE VRFP + IPS++QR T +L
Sbjct: 251 PRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLL 308
Query: 272 GHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQVFDTSQFFRE 330
L+RG++L Q ++ RLCQ +VF SG A PN ++R+ ++F F E
Sbjct: 309 DVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNE 368
Query: 331 LQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
L F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 369 LILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 418
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 200 bits (508), Expect = 2e-51
Identities = 148/410 (36%), Positives = 197/410 (48%), Gaps = 46/410 (11%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV--------DDYMGMIKRSPSP----- 165
AG E E E R + E +K P +G PSP
Sbjct: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPP 194
Query: 166 --PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKL 215
P R L LP A P G L+ H + + I F Y G+
Sbjct: 195 GNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDLEIKFQYRGRP 250
Query: 216 VGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSERQRQVTRKLF 271
T + P GCRL SQ L T +L+GP LE VRFP + IPS++QR T +L
Sbjct: 251 PRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLL 308
Query: 272 GHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQVFDTSQFFRE 330
L+RG++L Q ++ RLCQ +VF SG A PN ++R+ ++F F E
Sbjct: 309 DVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNE 368
Query: 331 LQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
L F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 369 LILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 418
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 197 bits (500), Expect = 2e-50
Identities = 144/432 (33%), Positives = 196/432 (45%), Gaps = 64/432 (14%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTE----MECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLPDWW 178
AG E E M S D + P + Y ++K P + L
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPY-SLLKEDVKWPPTLQPPTLRPPT 194
Query: 179 AQQPSTGVPLVTGYTTYD------------------------------------------ 196
Q P+ P+V G D
Sbjct: 195 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDL 254
Query: 197 ---AHHSAFSQMVISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLEL 249
H + + I F Y G+ T + P GCRL SQ L T +L+GP LE
Sbjct: 255 LISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQ 312
Query: 250 VRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKG 308
VRFP + IPS++QR T +L L+RG++L Q ++ RLCQ +VF SG A
Sbjct: 313 VRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDS 372
Query: 309 RPNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILV 367
PN ++R+ ++F F EL F Q P + CFGEE+PD P KLI V
Sbjct: 373 CPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITV 432
Query: 368 QIEQLYVRQLAE 379
Q+ + R L E
Sbjct: 433 QVVPVAARLLLE 444
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 196 bits (499), Expect = 3e-50
Identities = 148/425 (34%), Positives = 197/425 (46%), Gaps = 60/425 (14%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTE----MECGRSEIDELIKEPSVDDY----------------------- 155
AG E E M S D + P + Y
Sbjct: 136 YSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLQPPVV 195
Query: 156 MGMIKRSPSP-------PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHS 200
+G PSP P R L LP A P G L+ H
Sbjct: 196 LGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHML 251
Query: 201 AFSQMVISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPAD 256
+ + I F Y G+ T + P GCRL SQ L T +L+GP LE VRFP +
Sbjct: 252 PLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPE 309
Query: 257 AIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLER 315
IPS++QR T +L L+RG++L Q ++ RLCQ +VF SG A PN ++R
Sbjct: 310 DIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQR 369
Query: 316 DEVVQVFDTSQFFRELQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYV 374
+ ++F F EL F Q P + CFGEE+PD P KLI VQ+ +
Sbjct: 370 EVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAA 429
Query: 375 RQLAE 379
R L E
Sbjct: 430 RLLLE 434
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 196 bits (498), Expect = 3e-50
Identities = 148/420 (35%), Positives = 197/420 (46%), Gaps = 56/420 (13%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV------------------DDYMGMIK 160
AG E E E R + E +K P +G
Sbjct: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPA 194
Query: 161 RSPSP-------PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQM 205
PSP P R L LP A P G L+ H + +
Sbjct: 195 PDPSPLAPPPGNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDL 250
Query: 206 VISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSE 261
I F Y G+ T + P GCRL SQ L T +L+GP LE VRFP + IPS+
Sbjct: 251 EIKFQYRGRPPRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSD 308
Query: 262 RQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQ 320
+QR T +L L+RG++L Q ++ RLCQ +VF SG A PN ++R+ +
Sbjct: 309 KQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTK 368
Query: 321 VFDTSQFFRELQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
+F F EL F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 369 LFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 428
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 196 bits (498), Expect = 3e-50
Identities = 148/420 (35%), Positives = 197/420 (46%), Gaps = 56/420 (13%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
Query: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV------------------DDYMGMIK 160
AG E E E R + E +K P +G
Sbjct: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPA 194
Query: 161 RSPSP-------PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQM 205
PSP P R L LP A P G L+ H + +
Sbjct: 195 PDPSPLAPPPGNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDL 250
Query: 206 VISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSE 261
I F Y G+ T + P GCRL SQ L T +L+GP LE VRFP + IPS+
Sbjct: 251 EIKFQYRGRPPRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSD 308
Query: 262 RQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQ 320
+QR T +L L+RG++L Q ++ RLCQ +VF SG A PN ++R+ +
Sbjct: 309 KQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTK 368
Query: 321 VFDTSQFFRELQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
+F F EL F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 369 LFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 428
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 129 bits (323), Expect = 7e-30
Identities = 109/400 (27%), Positives = 172/400 (43%), Gaps = 54/400 (13%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
R+ WL+ Q+D G+ W N+ ++ FRIPWKH +QD QE D IF+AWA G +
Sbjct: 7 RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-DFGIFQAWAEATGAYV 65
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGVATA 127
G DK + TWK R ALN+ DRS+ D +P+K+Y V GV
Sbjct: 66 PGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSK-DPHDPHKIYEFV-------NSGVGDF 117
Query: 128 GCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSP----------PEACRSQLLPDW 177
+ + G S D +E +D+ +G + +P P PE C L
Sbjct: 118 SQPDTSPDTNGGGSTSD--TQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPL---- 171
Query: 178 WAQQPSTGVPLVTGYTTYDAHHSAFSQMV---------ISFYYGGKLVGQATTTCPEGCR 228
+ PS P T + + +++ ++ +Y G+ V Q T +CPEG R
Sbjct: 172 --RSPSLDNP--TPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLR 227
Query: 229 LSLSQPG---LPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQ 285
L S+ G LPG + P+ P ++ R + L G+ L + Q
Sbjct: 228 LVGSEVGDRTLPGWPVTLPD--------PGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQ 279
Query: 286 GVFVKRLCQGRVFCSGNAVVC----KGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRL 341
++ +RL + + + + G ++ +D+ VFD F +L F GR
Sbjct: 280 WLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRS 339
Query: 342 PDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAEEA 381
P + C GE +P P +L++V++ +R L E A
Sbjct: 340 PRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMA 379
>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
Length = 325
Score = 118 bits (295), Expect = 1e-26
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
R+R WL QI+S+ PGLIW N+E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGV 124
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 126
Query: 125 ATAGCVNEVTEMECGRSEID 144
++ ++ CG S D
Sbjct: 127 SSRDAKSKAKRKSCGDSSPD 146
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 117 bits (294), Expect = 2e-26
Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
R+R WL EQI+S+ PGL W N+EK +F+IPW HA + ++ E DA +F+ WA+ GK +
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLG 123
G DK +P TWK RCA+N PD EEV D+S + ++VYR++P E+ K G
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKG 122
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 89.0 bits (219), Expect = 8e-18
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 12 QWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF---- 67
+WL+ +I S Y GL W +E ++ FR+PWKH ++D + E DA IFKAWAV +G++
Sbjct: 29 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 87
Query: 68 ------KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
E + AE A WKT RCAL + F + D S D ++P+KVY + E
Sbjct: 88 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE 140
Score = 46.6 bits (109), Expect = 4e-05
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 207 ISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQV 266
++ Y G+ V Q P C P P + P+ V FP +P ++Q +
Sbjct: 304 VTIMYKGRTVLQKVVGHPS-CTFLYGPPD-PAVRATDPQQ---VAFPSPAELPDQKQLRY 358
Query: 267 TRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNK----LERDEVVQVF 322
T +L H+ G+ L ++ +R+ + +V+ P+ L R+ +F
Sbjct: 359 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIF 418
Query: 323 DTSQFFRELQQFYNSQGR-LPDGRVVLCFGEEFPDMAPLRSKLILVQIE 370
D FF+EL +F Q R P + L FG++ P L+LV++E
Sbjct: 419 DFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLE 467
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 89.0 bits (219), Expect = 8e-18
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 12 QWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF---- 67
+WL+ +I S Y GL W +E ++ FR+PWKH ++D + E DA IFKAWAV +G++
Sbjct: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
Query: 68 ------KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
E + AE A WKT RCAL + F + D S D ++P+KVY + E
Sbjct: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE 127
Score = 46.6 bits (109), Expect = 4e-05
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 207 ISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQV 266
++ Y G+ V Q P C P P + P+ V FP +P ++Q +
Sbjct: 291 VTIMYKGRTVLQKVVGHPS-CTFLYGPPD-PAVRATDPQQ---VAFPSPAELPDQKQLRY 345
Query: 267 TRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNK----LERDEVVQVF 322
T +L H+ G+ L ++ +R+ + +V+ P+ L R+ +F
Sbjct: 346 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIF 405
Query: 323 DTSQFFRELQQFYNSQGR-LPDGRVVLCFGEEFPDMAPLRSKLILVQIE 370
D FF+EL +F Q R P + L FG++ P L+LV++E
Sbjct: 406 DFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLE 454
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 89.0 bits (219), Expect = 8e-18
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 12 QWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF---- 67
+WL+ +I S Y GL W +E ++ FR+PWKH ++D + E DA IFKAWAV +G++
Sbjct: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
Query: 68 ------KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
E + AE A WKT RCAL + F + D S D ++P+KVY + E
Sbjct: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE 127
Score = 46.6 bits (109), Expect = 4e-05
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 207 ISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQV 266
++ Y G+ V Q P C P P + P+ V FP +P ++Q +
Sbjct: 262 VTIMYKGRTVLQKVVGHPS-CTFLYGPPD-PAVRATDPQQ---VAFPSPAELPDQKQLRY 316
Query: 267 TRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNK----LERDEVVQVF 322
T +L H+ G+ L ++ +R+ + +V+ P+ L R+ +F
Sbjct: 317 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIF 376
Query: 323 DTSQFFRELQQFYNSQGR-LPDGRVVLCFGEEFPDMAPLRSKLILVQIE 370
D FF+EL +F Q R P + L FG++ P L+LV++E
Sbjct: 377 DFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLE 425
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 17 QIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGDKAE 74
QI+S Y GL WE+ K++FRIPWKH KQ Y +AW V KGK EG E
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQGY---------QAWMVHKGKHLEGTNKE 64
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 17 QIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGDKAE 74
QI+S Y GL WE+ K++FRIPWKH KQ Y +AW V KGK EG E
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQGY---------QAWMVHKGKHLEGTNKE 64
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 17 QIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGDKAE 74
QI+S Y GL WE+ K++FRIPWKH KQ Y +AW V KGK EG E
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQGY---------QAWMVHKGKHLEGTNKE 64
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 31.6 bits (70), Expect = 1.4
Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 235 GLPGTKLYGPE--GLELVRFPPADAIPSERQRQVTRKLFG------HLERGVLLH----- 281
G P ++L G + E + P I S+ + V+ G H ++ +LH
Sbjct: 2489 GPPSSELQGSDKRSREKIATAPKKEILSKIYKDVSENGVGKVSKDEHFDKVTVLHYSGNV 2548
Query: 282 SSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQFYNSQGRL 341
SS + R + R+ ++ + R ++ ++ ++ + SQFFR+ + N + +
Sbjct: 2549 SSPKHAMWMRFTEDRLDRGREKLIYEDRVDRTVKEAEEKLTEVSQFFRDKTEKLNDELQS 2608
Query: 342 PDGRVVLCFGEEFPDMAPLRS---KLILVQI 369
P+ + G+E+ +P S K++L ++
Sbjct: 2609 PEKKARPKNGKEYSSQSPTSSSPEKVLLTEL 2639
>gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens]
Length = 1104
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 104 SEPYKVYRI--------VPEEEQKCKLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDY 155
S+PY + R+ V +EE + G V+EV E E++ K+P DD+
Sbjct: 356 SDPYALVRLGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEI---EVEVFDKDPDKDDF 412
Query: 156 MGMIKRSPSPPEACRSQLLPDWWAQQPSTG 185
+G +K + ++ +L DW+ Q G
Sbjct: 413 LGRMKLDVG--KVLQASVLDDWFPLQGGQG 440
>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
Length = 936
Score = 30.8 bits (68), Expect = 2.4
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 273 HLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTS----QFF 328
+L+ G+L +SR + + LC+ R CS + V RP ++ EV V D + +F
Sbjct: 77 NLQNGILFVNSR--IDREELCRRRAECSIHLEVIVDRPLQVFHVEVA-VKDINDNPPRFS 133
Query: 329 RELQQFYNSQGRLPDGRVVL 348
R+ Q+ + + R+PD R L
Sbjct: 134 RQEQRLFILESRMPDSRFPL 153
>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 816
Score = 30.8 bits (68), Expect = 2.4
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 273 HLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTS----QFF 328
+L+ G+L +SR + + LC+ R CS + V RP ++ EV V D + +F
Sbjct: 77 NLQNGILFVNSR--IDREELCRRRAECSIHLEVIVDRPLQVFHVEVA-VKDINDNPPRFS 133
Query: 329 RELQQFYNSQGRLPDGRVVL 348
R+ Q+ + + R+PD R L
Sbjct: 134 RQEQRLFILESRMPDSRFPL 153
>gi|25777608 NLR family member X1 isoform 1 [Homo sapiens]
Length = 975
Score = 30.0 bits (66), Expect = 4.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 370 EQLYVRQLAEEAGKSC-GAGSVMQAPEEPPPDQVFRMFP----DICASHQRS 416
E Y + ++ G S G + P+EPP D+VF +FP + ++H R+
Sbjct: 586 EDYYNDDVLDQMGASILGVEGPRRHPDEPPEDEVFELFPMFMGGLLSAHNRA 637
>gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]
Length = 921
Score = 30.0 bits (66), Expect = 4.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 370 EQLYVRQLAEEAGKSC-GAGSVMQAPEEPPPDQVFRMFP----DICASHQRS 416
E Y + ++ G S G + P+EPP D+VF +FP + ++H R+
Sbjct: 586 EDYYNDDVLDQMGASILGVEGPRRHPDEPPEDEVFELFPMFMGGLLSAHNRA 637
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 4.2
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 116 EEQKCKLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLP 175
+E+ A A G + L + P ++G PSPP+ C L P
Sbjct: 308 KEEAAAAAAAAAAAAAAAAAAATGPQGLHLLFERPRPPPFLG-----PSPPDRCAGFLEP 362
Query: 176 DWWAQQPSTGVP 187
W A P P
Sbjct: 363 TWLAAPPRLARP 374
>gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 3 [Homo sapiens]
Length = 702
Score = 29.6 bits (65), Expect = 5.5
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 18 IDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
I +Y G I E E+KS R+ K + N E IF+A AV K K
Sbjct: 102 IGDKVYQGEITEREKKSGDRVKEKRNKTTEENGEKGTEIFRASAVIPSKDK 152
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 29.6 bits (65), Expect = 5.5
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 18 IDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
I +Y G I E E+KS R+ K + N E IF+A AV K K
Sbjct: 102 IGDKVYQGEITEREKKSGDRVKEKRNKTTEENGEKGTEIFRASAVIPSKDK 152
>gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4
[Homo sapiens]
Length = 809
Score = 29.3 bits (64), Expect = 7.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 185 GVPLVTGYTTYDAHHSAFSQMVISFYYGGKLVGQATTTCPEG 226
GVP T Y H+ A + Y G +L+G+ T TC G
Sbjct: 661 GVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITCVPG 702
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,839,253
Number of Sequences: 37866
Number of extensions: 906628
Number of successful extensions: 2239
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 55
length of query: 426
length of database: 18,247,518
effective HSP length: 105
effective length of query: 321
effective length of database: 14,271,588
effective search space: 4581179748
effective search space used: 4581179748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.