Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NLRX1 Sequence: fasta or formatted (921aa) NCBI GI: 25777610
Description:

NLR family member X1 isoform 2

Referenced in:

Pyrin and Associated Functions

Other entries for this name:
alt prot [975aa] NLR family member X1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         85           3
 C cysteine            2.3         21           1
 D aspartate           3.8         35           2
 E glutamate           5.6         52           3
 F phenylalanine       4.1         38           2
 G glycine             7.5         69           2
 H histidine           3.1         29           2
 I isoleucine          2.7         25           2
 K lysine              2.5         23           3
 L leucine            15.6        144           3
 M methionine          2.2         20           1
 N asparagine          2.6         24           2
 P proline             7.4         68           3
 Q glutamine           4.3         40           1
 R arginine            7.3         67           2
 S serine              5.5         51           2
 T threonine           4.3         40           2
 V valine              6.2         57           2
 W tryptophan          1.2         11           1
 Y tyrosine            2.4         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family member X1 isoform 2 
NLRX1                 0.934   NLR family member X1 isoform 1 
NLRP6                 0.051   NLR family, pyrin domain containing 6 
NLRP7                 0.044   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.044   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.044   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP1                 0.041   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.041   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.041   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.041   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.041   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP2                 0.041   NLR family, pyrin domain containing 2 
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform b [Hom...
NOD1                  0.041   nucleotide-binding oligomerization domain containing ...
NLRC3                 0.041   NOD3 protein 
NLRP12                0.039   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP14                0.038   NLR family, pyrin domain containing 14 
NLRP4                 0.037   NLR family, pyrin domain containing 4 
NLRP5                 0.032   NACHT, LRR and PYD containing protein 5 
NLRP13                0.032   NACHT, leucine rich repeat and PYD containing 13 [H...
NOD2                  0.032   nucleotide-binding oligomerization domain containing...
NLRP10                0.032   NLR family, pyrin domain containing 10 
NLRP9                 0.026   NLR family, pyrin domain containing 9 
NLRC5                 0.026   nucleotide-binding oligomerization domains 27 [Homo...
NLRP8                 0.026   NLR family, pyrin domain containing 8 
RNH1                  0.017   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press