Guide to the Human Genome
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Search of human proteins with 4504465

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504465 homeobox B2 [Homo sapiens]
         (356 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504465 homeobox B2 [Homo sapiens]                                 735   0.0  
gi|10140847 homeobox A2 [Homo sapiens]                                304   9e-83
gi|24497513 homeobox A3 isoform a [Homo sapiens]                      136   3e-32
gi|13562112 homeobox A3 isoform a [Homo sapiens]                      136   3e-32
gi|84570137 homeobox B3 [Homo sapiens]                                127   2e-29
gi|19923391 homeobox D3 [Homo sapiens]                                126   3e-29
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]          114   2e-25
gi|24497515 homeobox A3 isoform b [Homo sapiens]                      112   4e-25
gi|23397672 homeobox D4 [Homo sapiens]                                111   9e-25
gi|13273315 homeobox B4 [Homo sapiens]                                111   1e-24
gi|24497538 homeobox C4 [Homo sapiens]                                109   4e-24
gi|24497540 homeobox C4 [Homo sapiens]                                109   4e-24
gi|24497526 homeobox B1 [Homo sapiens]                                107   1e-23
gi|148613882 homeobox A4 [Homo sapiens]                               102   4e-22
gi|5031761 homeobox A1 isoform a [Homo sapiens]                        99   4e-21
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     99   8e-21
gi|23510368 homeobox D11 [Homo sapiens]                                94   2e-19
gi|24497517 homeobox A5 [Homo sapiens]                                 94   2e-19
gi|13375632 homeobox D1 [Homo sapiens]                                 93   4e-19
gi|4504469 homeobox B5 [Homo sapiens]                                  92   7e-19
gi|15029506 homeobox D8 [Homo sapiens]                                 89   5e-18
gi|18959212 GS homeobox 2 [Homo sapiens]                               89   5e-18
gi|33457326 GS homeobox 1 [Homo sapiens]                               89   8e-18
gi|24497533 homeobox C10 [Homo sapiens]                                89   8e-18
gi|11321638 homeobox C5 [Homo sapiens]                                 88   1e-17
gi|13489077 homeobox A6 [Homo sapiens]                                 87   2e-17
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             87   2e-17
gi|194363768 homeobox D9 [Homo sapiens]                                86   4e-17
gi|24497556 homeobox A7 [Homo sapiens]                                 86   5e-17
gi|23503237 homeobox B6 [Homo sapiens]                                 86   7e-17

>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score =  735 bits (1897), Expect = 0.0
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 60
           MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA
Sbjct: 1   MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 60

Query: 61  STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 120
           STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA
Sbjct: 61  STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 120

Query: 121 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
           VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
Sbjct: 121 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180

Query: 181 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 240
           DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 240

Query: 241 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 300
           AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD
Sbjct: 241 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 300

Query: 301 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 356
           SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
Sbjct: 301 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 356


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score =  304 bits (778), Expect = 9e-83
 Identities = 191/383 (49%), Positives = 222/383 (57%), Gaps = 40/383 (10%)

Query: 1   MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ 57
           MN+EFEREIGFINSQPSLAECLTSFP V +TFQ+SSIK STL      PPPFEQT PSL 
Sbjct: 1   MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60

Query: 58  PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA 117
           PG+    R  +  R +  PA     P P  A  P PE+PWMKEKK+AKK +    + + A
Sbjct: 61  PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA 117

Query: 118 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
            +A       S  + L + +  GGG+RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
Sbjct: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177

Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAE--------EPA 229
           ALLDLTERQVKVWFQNRRMKHKRQTQ +E  + E  C  +LED     E        E A
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA 236

Query: 230 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG 276
            S  G    R  +  +      +  P   + D +   V             +    + P 
Sbjct: 237 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN 296

Query: 277 CALR-----GAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLD 331
           C        GAG     P   +V       P L D + F+ DSCLQLS  +SPSL GSLD
Sbjct: 297 CLSTMGQNCGAGLNNDSPEALEV-------PSLQDFSVFSTDSCLQLSDAVSPSLPGSLD 349

Query: 332 SPVPFSEEELDFFTSTLCAIDLQ 354
           SPV  S + LDFFT TL  IDLQ
Sbjct: 350 SPVDISADSLDFFTDTLTTIDLQ 372


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  136 bits (342), Expect = 3e-32
 Identities = 102/281 (36%), Positives = 130/281 (46%), Gaps = 60/281 (21%)

Query: 33  QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PPPLPA 88
           Q  S+ E  L PPPP  +   P+ QP     Q P         PA PPPP    PP   +
Sbjct: 81  QPPSLGEPPLHPPPP--QAAPPAPQPPQPAPQPPAPT------PAAPPPPSSASPPQNAS 132

Query: 89  APPAPE-----------------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPAD 131
             P P                  FPWMKE +   K   S++S     S    +G  SP  
Sbjct: 133 NNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSPP- 186

Query: 132 GLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 191
                  G   ++R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WF
Sbjct: 187 -------GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239

Query: 192 QNRRMKHKRQTQHR--------EPPDGEPACPGA------LEDICDPAEEPAASPGGPSA 237
           QNRRMK+K+  + +        + P   P  PGA      +  + +       SP  P  
Sbjct: 240 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPF 297

Query: 238 SRAAWEACCHPPEVVPGAL--SADPRPLAVRLEGAGASSPG 276
           S+        PP   P +L   A P P   R   AGA + G
Sbjct: 298 SKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  136 bits (342), Expect = 3e-32
 Identities = 102/281 (36%), Positives = 130/281 (46%), Gaps = 60/281 (21%)

Query: 33  QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PPPLPA 88
           Q  S+ E  L PPPP  +   P+ QP     Q P         PA PPPP    PP   +
Sbjct: 81  QPPSLGEPPLHPPPP--QAAPPAPQPPQPAPQPPAPT------PAAPPPPSSASPPQNAS 132

Query: 89  APPAPE-----------------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPAD 131
             P P                  FPWMKE +   K   S++S     S    +G  SP  
Sbjct: 133 NNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSPP- 186

Query: 132 GLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 191
                  G   ++R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WF
Sbjct: 187 -------GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239

Query: 192 QNRRMKHKRQTQHR--------EPPDGEPACPGA------LEDICDPAEEPAASPGGPSA 237
           QNRRMK+K+  + +        + P   P  PGA      +  + +       SP  P  
Sbjct: 240 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPF 297

Query: 238 SRAAWEACCHPPEVVPGAL--SADPRPLAVRLEGAGASSPG 276
           S+        PP   P +L   A P P   R   AGA + G
Sbjct: 298 SKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score =  127 bits (319), Expect = 2e-29
 Identities = 92/264 (34%), Positives = 123/264 (46%), Gaps = 37/264 (14%)

Query: 44  PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKS 103
           P  PP     PS  P ++T         ++ GP   P   P   +      FPWMKE + 
Sbjct: 87  PGSPP-----PSAAPTSATSNSSNGGGPSKSGP---PKCGPGTNSTLTKQIFPWMKESRQ 138

Query: 104 AKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGG----------ARRLRTAYTNT 153
             K   ++   +         G G  + G G    GGGG          ++R RTAYT+ 
Sbjct: 139 TSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSA 198

Query: 154 QLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPA 213
           QL+ELEKEFHFN+YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+  + +    G  +
Sbjct: 199 QLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK----GLAS 254

Query: 214 CPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGA- 272
             G           PA SP  P  S A +    H   + P   S  P       + A A 
Sbjct: 255 SSG--------GPSPAGSPPQPMQSTAGFMNALH--SMTPSYESPSPPAFGKAHQNAYAL 304

Query: 273 -SSPGCALRGAGGLE---PGPLPE 292
            S+    L+G G  +   P P PE
Sbjct: 305 PSNYQPPLKGCGAPQKYPPTPAPE 328


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score =  126 bits (317), Expect = 3e-29
 Identities = 85/235 (36%), Positives = 115/235 (48%), Gaps = 48/235 (20%)

Query: 72  AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVP--------- 122
           +E  P  PPPPPP LP + P      +  KK    P+ S++S + +    P         
Sbjct: 112 SEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNS 171

Query: 123 -----ASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
                 +  G   +    P   G  ++R+RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A
Sbjct: 172 KQKNSCATAGESCEDKSPP---GPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 228

Query: 178 ALLDLTERQVKVWFQNRRMKHKR-------------QTQHREPPDGE-----------PA 213
            LL+LTERQ+K+WFQNRRMK+K+             Q+  R PP G            P 
Sbjct: 229 NLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPP 288

Query: 214 CPGALEDICDPAEEPAASPGGPS----ASRAAWEACCHPPEVVPGALSADPRPLA 264
            PG   D   P   PA +   P+    A+  A  + C P +    A   +P P+A
Sbjct: 289 VPGLAYDAPSP---PAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMA 340


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score =  114 bits (284), Expect = 2e-25
 Identities = 96/282 (34%), Positives = 117/282 (41%), Gaps = 67/282 (23%)

Query: 44  PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPA-------------LPPPPPPPLP--A 88
           PPP PF     +L+ G+     P       D PA             LP PP  P P  A
Sbjct: 45  PPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGA 104

Query: 89  APPAPE--------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGG 140
            P   E        FPWMK  K+     Q A     A +A P                  
Sbjct: 105 EPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGG---AYAAEPEEN--------------- 146

Query: 141 GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
              +R RTAYT  QLLELEKEF FNKY+ RPRRVE+A +L+LTER +K+WFQNRRMK K+
Sbjct: 147 ---KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203

Query: 201 QTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADP 260
           +   +    G  A  G    + +P ++ A + G         E    PP   PG      
Sbjct: 204 EEDKKR--GGGTAVGGG--GVAEPEQDCAVTSGE--------ELLALPPPPPPGGAVPPA 251

Query: 261 RPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQDSP 302
            P+A R EG          R   GL   P P  V   R   P
Sbjct: 252 APVAAR-EG----------RLPPGLSASPQPSSVAPRRPQEP 282


>gi|24497515 homeobox A3 isoform b [Homo sapiens]
          Length = 285

 Score =  112 bits (281), Expect = 4e-25
 Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 31/195 (15%)

Query: 98  MKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLE 157
           MKE +   K   S++S     S    +G  SP         G   ++R RTAYT+ QL+E
Sbjct: 1   MKESRQNTKQKTSSSS-----SGESCAGDKSPP--------GQASSKRARTAYTSAQLVE 47

Query: 158 LEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR--------EPPD 209
           LEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+  + +        + P 
Sbjct: 48  LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPS 107

Query: 210 GEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGAL--SADPR 261
             P  PGA      +  + +       SP  P  S+        PP   P +L   A P 
Sbjct: 108 RSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPASLPSCAPPP 165

Query: 262 PLAVRLEGAGASSPG 276
           P   R   AGA + G
Sbjct: 166 PPQKRYTAAGAGAGG 180


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score =  111 bits (278), Expect = 9e-25
 Identities = 77/207 (37%), Positives = 100/207 (48%), Gaps = 20/207 (9%)

Query: 33  QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGP----ALPPPPPPPLPA 88
           Q +  +   L P P   EQ F    PG  +    R   +   GP    A P  P P  PA
Sbjct: 42  QGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPA 101

Query: 89  APPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSP------ADGLGLPEAGGGG 142
            PPAP          A+  SQS     P+ +A+    V  P       + +  P   GG 
Sbjct: 102 PPPAP-------LPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVN-PNYTGGE 153

Query: 143 ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQT 202
            +R RTAYT  Q+LELEKEFHFN+YL R RR+EIA  L L+ERQ+K+WFQNRRMK K+  
Sbjct: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-- 211

Query: 203 QHREPPDGEPACPGALEDICDPAEEPA 229
            H+ P     +   +    C  +  P+
Sbjct: 212 DHKLPNTKGRSSSSSSSSSCSSSVAPS 238


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score =  111 bits (277), Expect = 1e-24
 Identities = 81/198 (40%), Positives = 101/198 (51%), Gaps = 26/198 (13%)

Query: 60  ASTLQRPRSQKRAEDGPALPPPPPPP--------LPAAPPA----PEFPWMKEKKSAKKP 107
           A T+QR  + +     P  PPPPPPP         PA PPA    PE     E  S+  P
Sbjct: 59  ACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP 118

Query: 108 ----SQSATSPSPAASAVPASGVGSPADGLGL----PEAGGGGARRLRTAYTNTQLLELE 159
               +Q+   PSP+ SA     V      + +    P   GG  +R RTAYT  Q+LELE
Sbjct: 119 PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELE 178

Query: 160 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE 219
           KEFH+N+YL R RRVEIA  L L+ERQ+K+WFQNRRMK K+     + P+ +    GA  
Sbjct: 179 KEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKD---HKLPNTKIRSGGAAG 235

Query: 220 DICDPAEEPAASPGGPSA 237
               P   P    GGP A
Sbjct: 236 SAGGP---PGRPNGGPRA 250


>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  109 bits (272), Expect = 4e-24
 Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%)

Query: 42  LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81
           L PPPPP   ++P  Q   ++LQ P                 +SQ   E  P   A   P
Sbjct: 52  LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110

Query: 82  PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141
            P P   + PAP+ P      ++K+P        P    +  S V         P   GG
Sbjct: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154

Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
             +R RTAYT  Q+LELEKEFH+N+YL R RR+EIA  L L+ERQ+K+WFQNRRMK K+ 
Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213

Query: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233
             HR P     + P A      P+   AA+PG
Sbjct: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241


>gi|24497540 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  109 bits (272), Expect = 4e-24
 Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%)

Query: 42  LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81
           L PPPPP   ++P  Q   ++LQ P                 +SQ   E  P   A   P
Sbjct: 52  LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110

Query: 82  PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141
            P P   + PAP+ P      ++K+P        P    +  S V         P   GG
Sbjct: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154

Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
             +R RTAYT  Q+LELEKEFH+N+YL R RR+EIA  L L+ERQ+K+WFQNRRMK K+ 
Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213

Query: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233
             HR P     + P A      P+   AA+PG
Sbjct: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241


>gi|24497526 homeobox B1 [Homo sapiens]
          Length = 301

 Score =  107 bits (268), Expect = 1e-23
 Identities = 69/155 (44%), Positives = 80/155 (51%), Gaps = 29/155 (18%)

Query: 82  PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141
           P P  P  P A  F WMK K++            P  + V   G+GSP+           
Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNP-----------PKTAKVSEPGLGSPSG---------- 205

Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH-KR 200
               LRT +T  QL ELEKEFHFNKYL R RRVEIAA L+L E QVK+WFQNRRMK  KR
Sbjct: 206 ----LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261

Query: 201 QTQHREPPDGEPACP-GALEDICDPA--EEPAASP 232
           + +    P   P CP  A  D  D +    P ASP
Sbjct: 262 EREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASP 296


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score =  102 bits (255), Expect = 4e-22
 Identities = 71/179 (39%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 54  PSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATS 113
           P LQP A     P + +R E  PA P      +PA   AP  P +   KS          
Sbjct: 142 PPLQPRAVP---PAAPRRCEAAPATPG-----VPAGGSAPACPLLLADKSPLGLKGKEPV 193

Query: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173
             P    +  S V         P   GG  +R RTAYT  Q+LELEKEFHFN+YL R RR
Sbjct: 194 VYPWMKKIHVSAVN--------PSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR 245

Query: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASP 232
           +EIA  L L+ERQVK+WFQNRRMK K+   H+ P     +   A      P +    SP
Sbjct: 246 IEIAHTLCLSERQVKIWFQNRRMKWKK--DHKLPNTKMRSSNSASASAGPPGKAQTQSP 302


>gi|5031761 homeobox A1 isoform a [Homo sapiens]
          Length = 335

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 63/153 (41%), Positives = 78/153 (50%), Gaps = 24/153 (15%)

Query: 84  PPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGA 143
           P    + PA  F WMK K++                  P +G       LG P A     
Sbjct: 194 PASETSSPAQTFDWMKVKRNP-----------------PKTGKVGEYGYLGQPNA----- 231

Query: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
             +RT +T  QL ELEKEFHFNKYL R RRVEIAA L L E QVK+WFQNRRMK K++ +
Sbjct: 232 --VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289

Query: 204 HREPPDGEPACPGALEDICDPAEEPAASPGGPS 236
               P      PG  E   + +E+ ++SP  PS
Sbjct: 290 EGLLPISPATPPGNDEKAEESSEKSSSSPCVPS 322


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 98.6 bits (244), Expect = 8e-21
 Identities = 77/221 (34%), Positives = 97/221 (43%), Gaps = 71/221 (32%)

Query: 75  GPALPPPPPP------------PLPAAP-------PAPEFPWMKE-----KKSAKKPSQS 110
           GP  PPP PP            P PA P       PAP+  W           A  P+  
Sbjct: 31  GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90

Query: 111 ATSPSPAASAVPASG------VGSPADGLGLPEA-------------------GGGGARR 145
           A  P P  S VPA        +  P  G G P +                   GGGG+ +
Sbjct: 91  AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGK 150

Query: 146 LRT------AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK-- 197
            RT       YT+ Q LELEKEFH+++Y+   R+ E+AA L LTERQVK+WFQNRR K  
Sbjct: 151 TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKER 210

Query: 198 --HKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPS 236
             +K++ Q ++PP      P    DI        A+P GPS
Sbjct: 211 KVNKKKQQQQQPPQ-----PPMAHDI-------TATPAGPS 239


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 72  AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPAS-----GV 126
           A  GP    P PPP    PPAP  P     K   +        SP   A P S       
Sbjct: 184 AAPGPPFAGPQPPP----PPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAE 239

Query: 127 GSPADGLGLPEAGGGG----------ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEI 176
           GS  DG G P   G            +R+ R  YT  Q+ ELE+EF FN Y+ + +R+++
Sbjct: 240 GSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQL 299

Query: 177 AALLDLTERQVKVWFQNRRMKHKRQTQHR 205
           + +L+LT+RQVK+WFQNRRMK K+  + R
Sbjct: 300 SRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 48/105 (45%), Positives = 65/105 (61%)

Query: 99  KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLEL 158
           ++  ++ + + + + PSPA  A P          +     GG   +R RTAYT  Q LEL
Sbjct: 151 EDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLEL 210

Query: 159 EKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
           EKEFHFN+YL R RR+EIA  L L+ERQ+K+WFQNRRMK K+  +
Sbjct: 211 EKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 255


>gi|13375632 homeobox D1 [Homo sapiens]
          Length = 328

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 64/181 (35%), Positives = 82/181 (45%), Gaps = 25/181 (13%)

Query: 60  ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPA-PEFPWMKEKKSAKKPSQSATSPSPAA 118
           AS    P + + A   P   P    P    P A   F WMK K++A K  + A       
Sbjct: 169 ASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEY----- 223

Query: 119 SAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAA 178
                 G  SP+  +             RT ++  QL ELEKEFHFNKYL R RR+EIA 
Sbjct: 224 ------GAASPSSAI-------------RTNFSTKQLTELEKEFHFNKYLTRARRIEIAN 264

Query: 179 LLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSAS 238
            L L + QVK+WFQNRRMK K++ +        P  P  L        +   +PG PS S
Sbjct: 265 CLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQS 324

Query: 239 R 239
           +
Sbjct: 325 Q 325


>gi|4504469 homeobox B5 [Homo sapiens]
          Length = 269

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 59/150 (39%), Positives = 72/150 (48%), Gaps = 37/150 (24%)

Query: 60  ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPE------FPWMKEKKSAKKPSQSATS 113
           AS    P         P+L    P P+  +  APE      FPWM++       S   T 
Sbjct: 136 ASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHI----SHDMTG 191

Query: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173
           P                DG           +R RTAYT  Q LELEKEFHFN+YL R RR
Sbjct: 192 P----------------DG-----------KRARTAYTRYQTLELEKEFHFNRYLTRRRR 224

Query: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
           +EIA  L L+ERQ+K+WFQNRRMK K+  +
Sbjct: 225 IEIAHALCLSERQIKIWFQNRRMKWKKDNK 254


>gi|15029506 homeobox D8 [Homo sapiens]
          Length = 290

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 67/200 (33%), Positives = 85/200 (42%), Gaps = 33/200 (16%)

Query: 44  PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAP---------- 93
           P PPP        +        P     A    A PPPPP P P  PP P          
Sbjct: 74  PSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEP 133

Query: 94  -------------EFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGL--PEA 138
                         F   +E +  + P   ++S +        +   SP+       P+A
Sbjct: 134 AKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQA 193

Query: 139 GGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
             G  RR R  Y+  Q LELEKEF FN YL R RR+E++  L LTERQVK+WFQNRRMK 
Sbjct: 194 APG-RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKW 252

Query: 199 KRQ-------TQHREPPDGE 211
           K++          +E  DGE
Sbjct: 253 KKENNKDKFPVSRQEVKDGE 272


>gi|18959212 GS homeobox 2 [Homo sapiens]
          Length = 304

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 22/119 (18%)

Query: 105 KKPSQSATSPSPAASAVPASGVGSPADGLGLPEA----------------GGGGA----- 143
           ++P  +A + + AA+A  A+ +G P     +  A                GG  A     
Sbjct: 142 QQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPN 201

Query: 144 -RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
            +R+RTA+T+TQLLELE+EF  N YL R RR+EIA  L+L+E+QVK+WFQNRR+KHK++
Sbjct: 202 GKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260


>gi|33457326 GS homeobox 1 [Homo sapiens]
          Length = 264

 Score = 88.6 bits (218), Expect = 8e-18
 Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 29/186 (15%)

Query: 80  PPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPA---DGLGLP 136
           PP PP LP    +  FP    +       +  ++ SP  +  PA+   + A       LP
Sbjct: 70  PPGPPALPLLKAS--FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLP 127

Query: 137 EAGG-------------GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 183
           +                  ++R+RTA+T+TQLLELE+EF  N YL R RR+EIA  L+L+
Sbjct: 128 DPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLS 187

Query: 184 ERQVKVWFQNRRMKHKRQ---TQHREPPDGEPACPGALEDICDPA--------EEPAASP 232
           E+QVK+WFQNRR+KHK++   + HR    G     G+    C  A        E+    P
Sbjct: 188 EKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELP 247

Query: 233 GGPSAS 238
             PS+S
Sbjct: 248 MSPSSS 253


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score = 88.6 bits (218), Expect = 8e-18
 Identities = 67/206 (32%), Positives = 94/206 (45%), Gaps = 23/206 (11%)

Query: 14  SQPSLAECLTSFPAVLETFQTSSIKESTLIPPP---------PPFEQTFPSLQPGASTLQ 64
           S P    CL      + ++  +S   S L   P          PFEQ   SL P A  L+
Sbjct: 130 SHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQR-ASLNPRAEHLE 188

Query: 65  RPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKK--PSQSATSPSPAASAVP 122
            P+       G  +  P  P   +  P+P     ++  +  K  PS+S    + AA + P
Sbjct: 189 SPQL------GGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSP 242

Query: 123 ASGVGSPADGLGLPEAGGG-----GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
            +      + +      G        R+ R  YT  Q LELEKEF FN YL R RR+EI+
Sbjct: 243 DTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 302

Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQ 203
             ++LT+RQVK+WFQNRRMK K+  +
Sbjct: 303 KTINLTDRQVKIWFQNRRMKLKKMNR 328


>gi|11321638 homeobox C5 [Homo sapiens]
          Length = 222

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 67/179 (37%), Positives = 83/179 (46%), Gaps = 24/179 (13%)

Query: 40  STLIPPPPPFEQTFPSLQPGASTLQRPRSQK-RAEDGPALPPPPPPPLPAAPPAPEFPWM 98
           S   PPP P          G      PR+   R     A  P   P    A  AP  P M
Sbjct: 46  SITFPPPAPSNSLH-----GVDMAANPRAHPDRPACSAAAAPGHAPGRDEA--APLNPGM 98

Query: 99  KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG--------------GAR 144
             +K+A+ P+    + S        +  G PA GL  P A                   +
Sbjct: 99  YSQKAAR-PALEERAKSSGEIKEEQAQTGQPA-GLSQPPAPPQIYPWMTKLHMSHETDGK 156

Query: 145 RLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
           R RT+YT  Q LELEKEFHFN+YL R RR+EIA  L L ERQ+K+WFQNRRMK K+ ++
Sbjct: 157 RSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
           G   RR R  YT  Q LELEKEFHFN+YL R RR+EIA  L LTERQ+K+WFQNRRMK K
Sbjct: 152 GSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK 211

Query: 200 RQTQ--HREPPDGE 211
           ++ +  +   P GE
Sbjct: 212 KENKLINSTQPSGE 225


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 65/175 (37%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 29  LETFQTSSIKESTLIPPPPP---FEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPP 85
           LE  +    +E    PPPPP   F +TFPSL            +  A  G   P      
Sbjct: 148 LEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGD--PAGSEQE 205

Query: 86  LPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARR 145
              +    E     +  SA  P  +   P P       +G    A       A GG +RR
Sbjct: 206 EEGSGGDSEDDGFLD-SSAGGPG-ALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRR 263

Query: 146 LRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
            RTA+T+ QLLELEKEFH  KYL    R +IA  L L+E QVK+WFQNRR K KR
Sbjct: 264 RRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 18/118 (15%)

Query: 91  PAPEFPWMKEKKSAKKPSQSATSPS-PAASAVPASGVGSPADGLGLPEAGGGGARRLRTA 149
           P P     +E+K   +P Q    P+ PAA+ + A                    R+ R  
Sbjct: 249 PIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARST-----------------RKKRCP 291

Query: 150 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREP 207
           YT  Q LELEKEF FN YL R RR E+A +L+LTERQVK+WFQNRRMK K+ ++ + P
Sbjct: 292 YTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCP 349


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 138 AGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197
           + G   +R R  YT  Q LELEKEFHFN+YL R RR+EIA  L LTERQ+K+WFQNRRMK
Sbjct: 125 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 184

Query: 198 HKRQTQHREPPDGEPACPGAL 218
            K++ +  E P    A  GA+
Sbjct: 185 WKKEHKD-EGPTAAAAPEGAV 204


>gi|23503237 homeobox B6 [Homo sapiens]
          Length = 224

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 40/64 (62%), Positives = 49/64 (76%)

Query: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
           G   RR R  YT  Q LELEKEFH+N+YL R RR+EIA  L LTERQ+K+WFQNRRMK K
Sbjct: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202

Query: 200 RQTQ 203
           ++++
Sbjct: 203 KESK 206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,663,919
Number of Sequences: 37866
Number of extensions: 1489290
Number of successful extensions: 28873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 1290
Number of HSP's that attempted gapping in prelim test: 10959
Number of HSP's gapped (non-prelim): 10422
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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