BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4504465 homeobox B2 [Homo sapiens] (356 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4504465 homeobox B2 [Homo sapiens] 735 0.0 gi|10140847 homeobox A2 [Homo sapiens] 304 9e-83 gi|24497513 homeobox A3 isoform a [Homo sapiens] 136 3e-32 gi|13562112 homeobox A3 isoform a [Homo sapiens] 136 3e-32 gi|84570137 homeobox B3 [Homo sapiens] 127 2e-29 gi|19923391 homeobox D3 [Homo sapiens] 126 3e-29 gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 114 2e-25 gi|24497515 homeobox A3 isoform b [Homo sapiens] 112 4e-25 gi|23397672 homeobox D4 [Homo sapiens] 111 9e-25 gi|13273315 homeobox B4 [Homo sapiens] 111 1e-24 gi|24497538 homeobox C4 [Homo sapiens] 109 4e-24 gi|24497540 homeobox C4 [Homo sapiens] 109 4e-24 gi|24497526 homeobox B1 [Homo sapiens] 107 1e-23 gi|148613882 homeobox A4 [Homo sapiens] 102 4e-22 gi|5031761 homeobox A1 isoform a [Homo sapiens] 99 4e-21 gi|121114296 caudal type homeobox 1 [Homo sapiens] 99 8e-21 gi|23510368 homeobox D11 [Homo sapiens] 94 2e-19 gi|24497517 homeobox A5 [Homo sapiens] 94 2e-19 gi|13375632 homeobox D1 [Homo sapiens] 93 4e-19 gi|4504469 homeobox B5 [Homo sapiens] 92 7e-19 gi|15029506 homeobox D8 [Homo sapiens] 89 5e-18 gi|18959212 GS homeobox 2 [Homo sapiens] 89 5e-18 gi|33457326 GS homeobox 1 [Homo sapiens] 89 8e-18 gi|24497533 homeobox C10 [Homo sapiens] 89 8e-18 gi|11321638 homeobox C5 [Homo sapiens] 88 1e-17 gi|13489077 homeobox A6 [Homo sapiens] 87 2e-17 gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 87 2e-17 gi|194363768 homeobox D9 [Homo sapiens] 86 4e-17 gi|24497556 homeobox A7 [Homo sapiens] 86 5e-17 gi|23503237 homeobox B6 [Homo sapiens] 86 7e-17 >gi|4504465 homeobox B2 [Homo sapiens] Length = 356 Score = 735 bits (1897), Expect = 0.0 Identities = 356/356 (100%), Positives = 356/356 (100%) Query: 1 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 60 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA Sbjct: 1 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGA 60 Query: 61 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 120 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA Sbjct: 61 STLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA 120 Query: 121 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL Sbjct: 121 VPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 Query: 181 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 240 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRA 240 Query: 241 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 300 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD Sbjct: 241 AWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQD 300 Query: 301 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 356 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP Sbjct: 301 SPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP 356 >gi|10140847 homeobox A2 [Homo sapiens] Length = 376 Score = 304 bits (778), Expect = 9e-83 Identities = 191/383 (49%), Positives = 222/383 (57%), Gaps = 40/383 (10%) Query: 1 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ 57 MN+EFEREIGFINSQPSLAECLTSFP V +TFQ+SSIK STL PPPFEQT PSL Sbjct: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60 Query: 58 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA 117 PG+ R + R + PA P P A P PE+PWMKEKK+AKK + + + A Sbjct: 61 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA 117 Query: 118 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 +A S + L + + GGG+RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA Sbjct: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAE--------EPA 229 ALLDLTERQVKVWFQNRRMKHKRQTQ +E + E C +LED E E A Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA 236 Query: 230 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG 276 S G R + + + P + D + V + + P Sbjct: 237 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN 296 Query: 277 CALR-----GAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLD 331 C GAG P +V P L D + F+ DSCLQLS +SPSL GSLD Sbjct: 297 CLSTMGQNCGAGLNNDSPEALEV-------PSLQDFSVFSTDSCLQLSDAVSPSLPGSLD 349 Query: 332 SPVPFSEEELDFFTSTLCAIDLQ 354 SPV S + LDFFT TL IDLQ Sbjct: 350 SPVDISADSLDFFTDTLTTIDLQ 372 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 136 bits (342), Expect = 3e-32 Identities = 102/281 (36%), Positives = 130/281 (46%), Gaps = 60/281 (21%) Query: 33 QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PPPLPA 88 Q S+ E L PPPP + P+ QP Q P PA PPPP PP + Sbjct: 81 QPPSLGEPPLHPPPP--QAAPPAPQPPQPAPQPPAPT------PAAPPPPSSASPPQNAS 132 Query: 89 APPAPE-----------------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPAD 131 P P FPWMKE + K S++S S +G SP Sbjct: 133 NNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSPP- 186 Query: 132 GLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 191 G ++R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WF Sbjct: 187 -------GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239 Query: 192 QNRRMKHKRQTQHR--------EPPDGEPACPGA------LEDICDPAEEPAASPGGPSA 237 QNRRMK+K+ + + + P P PGA + + + SP P Sbjct: 240 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPF 297 Query: 238 SRAAWEACCHPPEVVPGAL--SADPRPLAVRLEGAGASSPG 276 S+ PP P +L A P P R AGA + G Sbjct: 298 SKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 136 bits (342), Expect = 3e-32 Identities = 102/281 (36%), Positives = 130/281 (46%), Gaps = 60/281 (21%) Query: 33 QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PPPLPA 88 Q S+ E L PPPP + P+ QP Q P PA PPPP PP + Sbjct: 81 QPPSLGEPPLHPPPP--QAAPPAPQPPQPAPQPPAPT------PAAPPPPSSASPPQNAS 132 Query: 89 APPAPE-----------------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPAD 131 P P FPWMKE + K S++S S +G SP Sbjct: 133 NNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSPP- 186 Query: 132 GLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 191 G ++R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WF Sbjct: 187 -------GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239 Query: 192 QNRRMKHKRQTQHR--------EPPDGEPACPGA------LEDICDPAEEPAASPGGPSA 237 QNRRMK+K+ + + + P P PGA + + + SP P Sbjct: 240 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPF 297 Query: 238 SRAAWEACCHPPEVVPGAL--SADPRPLAVRLEGAGASSPG 276 S+ PP P +L A P P R AGA + G Sbjct: 298 SKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338 >gi|84570137 homeobox B3 [Homo sapiens] Length = 431 Score = 127 bits (319), Expect = 2e-29 Identities = 92/264 (34%), Positives = 123/264 (46%), Gaps = 37/264 (14%) Query: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKS 103 P PP PS P ++T ++ GP P P + FPWMKE + Sbjct: 87 PGSPP-----PSAAPTSATSNSSNGGGPSKSGP---PKCGPGTNSTLTKQIFPWMKESRQ 138 Query: 104 AKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGG----------ARRLRTAYTNT 153 K ++ + G G + G G GGGG ++R RTAYT+ Sbjct: 139 TSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSA 198 Query: 154 QLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPA 213 QL+ELEKEFHFN+YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+ + + G + Sbjct: 199 QLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK----GLAS 254 Query: 214 CPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGA- 272 G PA SP P S A + H + P S P + A A Sbjct: 255 SSG--------GPSPAGSPPQPMQSTAGFMNALH--SMTPSYESPSPPAFGKAHQNAYAL 304 Query: 273 -SSPGCALRGAGGLE---PGPLPE 292 S+ L+G G + P P PE Sbjct: 305 PSNYQPPLKGCGAPQKYPPTPAPE 328 >gi|19923391 homeobox D3 [Homo sapiens] Length = 432 Score = 126 bits (317), Expect = 3e-29 Identities = 85/235 (36%), Positives = 115/235 (48%), Gaps = 48/235 (20%) Query: 72 AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVP--------- 122 +E P PPPPPP LP + P + KK P+ S++S + + P Sbjct: 112 SEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNS 171 Query: 123 -----ASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 + G + P G ++R+RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A Sbjct: 172 KQKNSCATAGESCEDKSPP---GPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 228 Query: 178 ALLDLTERQVKVWFQNRRMKHKR-------------QTQHREPPDGE-----------PA 213 LL+LTERQ+K+WFQNRRMK+K+ Q+ R PP G P Sbjct: 229 NLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPP 288 Query: 214 CPGALEDICDPAEEPAASPGGPS----ASRAAWEACCHPPEVVPGALSADPRPLA 264 PG D P PA + P+ A+ A + C P + A +P P+A Sbjct: 289 VPGLAYDAPSP---PAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMA 340 >gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] Length = 283 Score = 114 bits (284), Expect = 2e-25 Identities = 96/282 (34%), Positives = 117/282 (41%), Gaps = 67/282 (23%) Query: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPA-------------LPPPPPPPLP--A 88 PPP PF +L+ G+ P D PA LP PP P P A Sbjct: 45 PPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGA 104 Query: 89 APPAPE--------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGG 140 P E FPWMK K+ Q A A +A P Sbjct: 105 EPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGG---AYAAEPEEN--------------- 146 Query: 141 GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200 +R RTAYT QLLELEKEF FNKY+ RPRRVE+A +L+LTER +K+WFQNRRMK K+ Sbjct: 147 ---KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203 Query: 201 QTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADP 260 + + G A G + +P ++ A + G E PP PG Sbjct: 204 EEDKKR--GGGTAVGGG--GVAEPEQDCAVTSGE--------ELLALPPPPPPGGAVPPA 251 Query: 261 RPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQDSP 302 P+A R EG R GL P P V R P Sbjct: 252 APVAAR-EG----------RLPPGLSASPQPSSVAPRRPQEP 282 >gi|24497515 homeobox A3 isoform b [Homo sapiens] Length = 285 Score = 112 bits (281), Expect = 4e-25 Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 31/195 (15%) Query: 98 MKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLE 157 MKE + K S++S S +G SP G ++R RTAYT+ QL+E Sbjct: 1 MKESRQNTKQKTSSSS-----SGESCAGDKSPP--------GQASSKRARTAYTSAQLVE 47 Query: 158 LEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR--------EPPD 209 LEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+ + + + P Sbjct: 48 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPS 107 Query: 210 GEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGAL--SADPR 261 P PGA + + + SP P S+ PP P +L A P Sbjct: 108 RSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPASLPSCAPPP 165 Query: 262 PLAVRLEGAGASSPG 276 P R AGA + G Sbjct: 166 PPQKRYTAAGAGAGG 180 >gi|23397672 homeobox D4 [Homo sapiens] Length = 255 Score = 111 bits (278), Expect = 9e-25 Identities = 77/207 (37%), Positives = 100/207 (48%), Gaps = 20/207 (9%) Query: 33 QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGP----ALPPPPPPPLPA 88 Q + + L P P EQ F PG + R + GP A P P P PA Sbjct: 42 QGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPA 101 Query: 89 APPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSP------ADGLGLPEAGGGG 142 PPAP A+ SQS P+ +A+ V P + + P GG Sbjct: 102 PPPAP-------LPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVN-PNYTGGE 153 Query: 143 ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQT 202 +R RTAYT Q+LELEKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ Sbjct: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-- 211 Query: 203 QHREPPDGEPACPGALEDICDPAEEPA 229 H+ P + + C + P+ Sbjct: 212 DHKLPNTKGRSSSSSSSSSCSSSVAPS 238 >gi|13273315 homeobox B4 [Homo sapiens] Length = 251 Score = 111 bits (277), Expect = 1e-24 Identities = 81/198 (40%), Positives = 101/198 (51%), Gaps = 26/198 (13%) Query: 60 ASTLQRPRSQKRAEDGPALPPPPPPP--------LPAAPPA----PEFPWMKEKKSAKKP 107 A T+QR + + P PPPPPPP PA PPA PE E S+ P Sbjct: 59 ACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP 118 Query: 108 ----SQSATSPSPAASAVPASGVGSPADGLGL----PEAGGGGARRLRTAYTNTQLLELE 159 +Q+ PSP+ SA V + + P GG +R RTAYT Q+LELE Sbjct: 119 PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELE 178 Query: 160 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALE 219 KEFH+N+YL R RRVEIA L L+ERQ+K+WFQNRRMK K+ + P+ + GA Sbjct: 179 KEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKD---HKLPNTKIRSGGAAG 235 Query: 220 DICDPAEEPAASPGGPSA 237 P P GGP A Sbjct: 236 SAGGP---PGRPNGGPRA 250 >gi|24497538 homeobox C4 [Homo sapiens] Length = 264 Score = 109 bits (272), Expect = 4e-24 Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%) Query: 42 LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81 L PPPPP ++P Q ++LQ P +SQ E P A P Sbjct: 52 LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110 Query: 82 PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141 P P + PAP+ P ++K+P P + S V P GG Sbjct: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154 Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213 Query: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233 HR P + P A P+ AA+PG Sbjct: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241 >gi|24497540 homeobox C4 [Homo sapiens] Length = 264 Score = 109 bits (272), Expect = 4e-24 Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%) Query: 42 LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81 L PPPPP ++P Q ++LQ P +SQ E P A P Sbjct: 52 LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110 Query: 82 PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141 P P + PAP+ P ++K+P P + S V P GG Sbjct: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154 Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ Sbjct: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213 Query: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233 HR P + P A P+ AA+PG Sbjct: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241 >gi|24497526 homeobox B1 [Homo sapiens] Length = 301 Score = 107 bits (268), Expect = 1e-23 Identities = 69/155 (44%), Positives = 80/155 (51%), Gaps = 29/155 (18%) Query: 82 PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141 P P P P A F WMK K++ P + V G+GSP+ Sbjct: 167 PCPSEPNTPTARTFDWMKVKRNP-----------PKTAKVSEPGLGSPSG---------- 205 Query: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH-KR 200 LRT +T QL ELEKEFHFNKYL R RRVEIAA L+L E QVK+WFQNRRMK KR Sbjct: 206 ----LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261 Query: 201 QTQHREPPDGEPACP-GALEDICDPA--EEPAASP 232 + + P P CP A D D + P ASP Sbjct: 262 EREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASP 296 >gi|148613882 homeobox A4 [Homo sapiens] Length = 320 Score = 102 bits (255), Expect = 4e-22 Identities = 71/179 (39%), Positives = 86/179 (48%), Gaps = 18/179 (10%) Query: 54 PSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATS 113 P LQP A P + +R E PA P +PA AP P + KS Sbjct: 142 PPLQPRAVP---PAAPRRCEAAPATPG-----VPAGGSAPACPLLLADKSPLGLKGKEPV 193 Query: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173 P + S V P GG +R RTAYT Q+LELEKEFHFN+YL R RR Sbjct: 194 VYPWMKKIHVSAVN--------PSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR 245 Query: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASP 232 +EIA L L+ERQVK+WFQNRRMK K+ H+ P + A P + SP Sbjct: 246 IEIAHTLCLSERQVKIWFQNRRMKWKK--DHKLPNTKMRSSNSASASAGPPGKAQTQSP 302 >gi|5031761 homeobox A1 isoform a [Homo sapiens] Length = 335 Score = 99.4 bits (246), Expect = 4e-21 Identities = 63/153 (41%), Positives = 78/153 (50%), Gaps = 24/153 (15%) Query: 84 PPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGA 143 P + PA F WMK K++ P +G LG P A Sbjct: 194 PASETSSPAQTFDWMKVKRNP-----------------PKTGKVGEYGYLGQPNA----- 231 Query: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203 +RT +T QL ELEKEFHFNKYL R RRVEIAA L L E QVK+WFQNRRMK K++ + Sbjct: 232 --VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289 Query: 204 HREPPDGEPACPGALEDICDPAEEPAASPGGPS 236 P PG E + +E+ ++SP PS Sbjct: 290 EGLLPISPATPPGNDEKAEESSEKSSSSPCVPS 322 >gi|121114296 caudal type homeobox 1 [Homo sapiens] Length = 265 Score = 98.6 bits (244), Expect = 8e-21 Identities = 77/221 (34%), Positives = 97/221 (43%), Gaps = 71/221 (32%) Query: 75 GPALPPPPPP------------PLPAAP-------PAPEFPWMKE-----KKSAKKPSQS 110 GP PPP PP P PA P PAP+ W A P+ Sbjct: 31 GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90 Query: 111 ATSPSPAASAVPASG------VGSPADGLGLPEA-------------------GGGGARR 145 A P P S VPA + P G G P + GGGG+ + Sbjct: 91 AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGK 150 Query: 146 LRT------AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK-- 197 RT YT+ Q LELEKEFH+++Y+ R+ E+AA L LTERQVK+WFQNRR K Sbjct: 151 TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKER 210 Query: 198 --HKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPS 236 +K++ Q ++PP P DI A+P GPS Sbjct: 211 KVNKKKQQQQQPPQ-----PPMAHDI-------TATPAGPS 239 >gi|23510368 homeobox D11 [Homo sapiens] Length = 338 Score = 94.0 bits (232), Expect = 2e-19 Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 19/149 (12%) Query: 72 AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPAS-----GV 126 A GP P PPP PPAP P K + SP A P S Sbjct: 184 AAPGPPFAGPQPPP----PPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAE 239 Query: 127 GSPADGLGLPEAGGGG----------ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEI 176 GS DG G P G +R+ R YT Q+ ELE+EF FN Y+ + +R+++ Sbjct: 240 GSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQL 299 Query: 177 AALLDLTERQVKVWFQNRRMKHKRQTQHR 205 + +L+LT+RQVK+WFQNRRMK K+ + R Sbjct: 300 SRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328 >gi|24497517 homeobox A5 [Homo sapiens] Length = 270 Score = 93.6 bits (231), Expect = 2e-19 Identities = 48/105 (45%), Positives = 65/105 (61%) Query: 99 KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLEL 158 ++ ++ + + + + PSPA A P + GG +R RTAYT Q LEL Sbjct: 151 EDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLEL 210 Query: 159 EKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203 EKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + Sbjct: 211 EKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 255 >gi|13375632 homeobox D1 [Homo sapiens] Length = 328 Score = 92.8 bits (229), Expect = 4e-19 Identities = 64/181 (35%), Positives = 82/181 (45%), Gaps = 25/181 (13%) Query: 60 ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPA-PEFPWMKEKKSAKKPSQSATSPSPAA 118 AS P + + A P P P P A F WMK K++A K + A Sbjct: 169 ASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEY----- 223 Query: 119 SAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAA 178 G SP+ + RT ++ QL ELEKEFHFNKYL R RR+EIA Sbjct: 224 ------GAASPSSAI-------------RTNFSTKQLTELEKEFHFNKYLTRARRIEIAN 264 Query: 179 LLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSAS 238 L L + QVK+WFQNRRMK K++ + P P L + +PG PS S Sbjct: 265 CLHLNDTQVKIWFQNRRMKQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQS 324 Query: 239 R 239 + Sbjct: 325 Q 325 >gi|4504469 homeobox B5 [Homo sapiens] Length = 269 Score = 92.0 bits (227), Expect = 7e-19 Identities = 59/150 (39%), Positives = 72/150 (48%), Gaps = 37/150 (24%) Query: 60 ASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPE------FPWMKEKKSAKKPSQSATS 113 AS P P+L P P+ + APE FPWM++ S T Sbjct: 136 ASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHI----SHDMTG 191 Query: 114 PSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRR 173 P DG +R RTAYT Q LELEKEFHFN+YL R RR Sbjct: 192 P----------------DG-----------KRARTAYTRYQTLELEKEFHFNRYLTRRRR 224 Query: 174 VEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203 +EIA L L+ERQ+K+WFQNRRMK K+ + Sbjct: 225 IEIAHALCLSERQIKIWFQNRRMKWKKDNK 254 >gi|15029506 homeobox D8 [Homo sapiens] Length = 290 Score = 89.4 bits (220), Expect = 5e-18 Identities = 67/200 (33%), Positives = 85/200 (42%), Gaps = 33/200 (16%) Query: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAP---------- 93 P PPP + P A A PPPPP P P PP P Sbjct: 74 PSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEP 133 Query: 94 -------------EFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGL--PEA 138 F +E + + P ++S + + SP+ P+A Sbjct: 134 AKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQA 193 Query: 139 GGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198 G RR R Y+ Q LELEKEF FN YL R RR+E++ L LTERQVK+WFQNRRMK Sbjct: 194 APG-RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKW 252 Query: 199 KRQ-------TQHREPPDGE 211 K++ +E DGE Sbjct: 253 KKENNKDKFPVSRQEVKDGE 272 >gi|18959212 GS homeobox 2 [Homo sapiens] Length = 304 Score = 89.4 bits (220), Expect = 5e-18 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 22/119 (18%) Query: 105 KKPSQSATSPSPAASAVPASGVGSPADGLGLPEA----------------GGGGA----- 143 ++P +A + + AA+A A+ +G P + A GG A Sbjct: 142 QQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPN 201 Query: 144 -RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 +R+RTA+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ Sbjct: 202 GKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260 >gi|33457326 GS homeobox 1 [Homo sapiens] Length = 264 Score = 88.6 bits (218), Expect = 8e-18 Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 29/186 (15%) Query: 80 PPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPA---DGLGLP 136 PP PP LP + FP + + ++ SP + PA+ + A LP Sbjct: 70 PPGPPALPLLKAS--FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLP 127 Query: 137 EAGG-------------GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 183 + ++R+RTA+T+TQLLELE+EF N YL R RR+EIA L+L+ Sbjct: 128 DPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLS 187 Query: 184 ERQVKVWFQNRRMKHKRQ---TQHREPPDGEPACPGALEDICDPA--------EEPAASP 232 E+QVK+WFQNRR+KHK++ + HR G G+ C A E+ P Sbjct: 188 EKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELP 247 Query: 233 GGPSAS 238 PS+S Sbjct: 248 MSPSSS 253 >gi|24497533 homeobox C10 [Homo sapiens] Length = 342 Score = 88.6 bits (218), Expect = 8e-18 Identities = 67/206 (32%), Positives = 94/206 (45%), Gaps = 23/206 (11%) Query: 14 SQPSLAECLTSFPAVLETFQTSSIKESTLIPPP---------PPFEQTFPSLQPGASTLQ 64 S P CL + ++ +S S L P PFEQ SL P A L+ Sbjct: 130 SHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQR-ASLNPRAEHLE 188 Query: 65 RPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKK--PSQSATSPSPAASAVP 122 P+ G + P P + P+P ++ + K PS+S + AA + P Sbjct: 189 SPQL------GGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSP 242 Query: 123 ASGVGSPADGLGLPEAGGG-----GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 + + + G R+ R YT Q LELEKEF FN YL R RR+EI+ Sbjct: 243 DTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 302 Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQ 203 ++LT+RQVK+WFQNRRMK K+ + Sbjct: 303 KTINLTDRQVKIWFQNRRMKLKKMNR 328 >gi|11321638 homeobox C5 [Homo sapiens] Length = 222 Score = 87.8 bits (216), Expect = 1e-17 Identities = 67/179 (37%), Positives = 83/179 (46%), Gaps = 24/179 (13%) Query: 40 STLIPPPPPFEQTFPSLQPGASTLQRPRSQK-RAEDGPALPPPPPPPLPAAPPAPEFPWM 98 S PPP P G PR+ R A P P A AP P M Sbjct: 46 SITFPPPAPSNSLH-----GVDMAANPRAHPDRPACSAAAAPGHAPGRDEA--APLNPGM 98 Query: 99 KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG--------------GAR 144 +K+A+ P+ + S + G PA GL P A + Sbjct: 99 YSQKAAR-PALEERAKSSGEIKEEQAQTGQPA-GLSQPPAPPQIYPWMTKLHMSHETDGK 156 Query: 145 RLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203 R RT+YT Q LELEKEFHFN+YL R RR+EIA L L ERQ+K+WFQNRRMK K+ ++ Sbjct: 157 RSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215 >gi|13489077 homeobox A6 [Homo sapiens] Length = 233 Score = 87.4 bits (215), Expect = 2e-17 Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 2/74 (2%) Query: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199 G RR R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK K Sbjct: 152 GSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK 211 Query: 200 RQTQ--HREPPDGE 211 ++ + + P GE Sbjct: 212 KENKLINSTQPSGE 225 >gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] Length = 363 Score = 87.4 bits (215), Expect = 2e-17 Identities = 65/175 (37%), Positives = 79/175 (45%), Gaps = 7/175 (4%) Query: 29 LETFQTSSIKESTLIPPPPP---FEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPP 85 LE + +E PPPPP F +TFPSL + A G P Sbjct: 148 LEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGD--PAGSEQE 205 Query: 86 LPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARR 145 + E + SA P + P P +G A A GG +RR Sbjct: 206 EEGSGGDSEDDGFLD-SSAGGPG-ALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRR 263 Query: 146 LRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200 RTA+T+ QLLELEKEFH KYL R +IA L L+E QVK+WFQNRR K KR Sbjct: 264 RRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318 >gi|194363768 homeobox D9 [Homo sapiens] Length = 352 Score = 86.3 bits (212), Expect = 4e-17 Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 18/118 (15%) Query: 91 PAPEFPWMKEKKSAKKPSQSATSPS-PAASAVPASGVGSPADGLGLPEAGGGGARRLRTA 149 P P +E+K +P Q P+ PAA+ + A R+ R Sbjct: 249 PIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARST-----------------RKKRCP 291 Query: 150 YTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREP 207 YT Q LELEKEF FN YL R RR E+A +L+LTERQVK+WFQNRRMK K+ ++ + P Sbjct: 292 YTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCP 349 >gi|24497556 homeobox A7 [Homo sapiens] Length = 230 Score = 85.9 bits (211), Expect = 5e-17 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 138 AGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197 + G +R R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK Sbjct: 125 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 184 Query: 198 HKRQTQHREPPDGEPACPGAL 218 K++ + E P A GA+ Sbjct: 185 WKKEHKD-EGPTAAAAPEGAV 204 >gi|23503237 homeobox B6 [Homo sapiens] Length = 224 Score = 85.5 bits (210), Expect = 7e-17 Identities = 40/64 (62%), Positives = 49/64 (76%) Query: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199 G RR R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK K Sbjct: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202 Query: 200 RQTQ 203 ++++ Sbjct: 203 KESK 206 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.134 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,663,919 Number of Sequences: 37866 Number of extensions: 1489290 Number of successful extensions: 28873 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 987 Number of HSP's successfully gapped in prelim test: 1290 Number of HSP's that attempted gapping in prelim test: 10959 Number of HSP's gapped (non-prelim): 10422 length of query: 356 length of database: 18,247,518 effective HSP length: 103 effective length of query: 253 effective length of database: 14,347,320 effective search space: 3629871960 effective search space used: 3629871960 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.