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Search of human proteins with 4504367
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504367 HESX homeobox 1 [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504367 HESX homeobox 1 [Homo sapiens] 384 e-107
gi|27777663 goosecoid [Homo sapiens] 85 4e-17
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 78 4e-15
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 78 5e-15
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 78 5e-15
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 72 2e-13
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 72 2e-13
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 72 2e-13
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 72 2e-13
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 71 5e-13
gi|7706659 paired related homeobox 2 [Homo sapiens] 71 6e-13
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 71 6e-13
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 70 1e-12
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 70 1e-12
gi|12707580 paired-like homeobox 2b [Homo sapiens] 69 2e-12
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 69 3e-12
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 68 4e-12
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 68 4e-12
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 68 4e-12
gi|46249382 paired-like homeobox 2a [Homo sapiens] 68 5e-12
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 67 7e-12
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 67 7e-12
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 67 7e-12
gi|4557489 cone-rod homeobox protein [Homo sapiens] 67 7e-12
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 67 9e-12
gi|24497589 aristaless related homeobox [Homo sapiens] 67 1e-11
gi|34365783 visual system homeobox 2 [Homo sapiens] 66 2e-11
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 66 2e-11
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 66 2e-11
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 66 2e-11
>gi|4504367 HESX homeobox 1 [Homo sapiens]
Length = 185
Score = 384 bits (986), Expect = e-107
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCL 60
MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCL
Sbjct: 1 MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCL 60
Query: 61 HVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQI 120
HVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQI
Sbjct: 61 HVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQI 120
Query: 121 EVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFN 180
EVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFN
Sbjct: 121 EVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFN 180
Query: 181 TNLLE 185
TNLLE
Sbjct: 181 TNLLE 185
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 84.7 bits (208), Expect = 4e-17
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 59 CLHVPNPPSGISFPSVVDHPMPEERASKYENYFSASE-RLSLKRELSWYRGRRPRTAFTQ 117
C VP PP SV+ P+P + Y N + S L L +L R RR RT FT
Sbjct: 111 CSCVPTPPGYEGPGSVLVSPVPHQMLP-YMNVGTLSRTELQLLNQLHCRRKRRHRTIFTD 169
Query: 118 NQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRES 170
Q+E LEN+F+ YP + RE LA+K++L E+++++WF+NRRAK +R R S
Sbjct: 170 EQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSS 222
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 78.2 bits (191), Expect = 4e-15
Identities = 51/144 (35%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 30 DQKKDCVPLMKPHR-----PWADTCSSSGKDGNLCLHVPNPPSGISFPSVVDHPMPEERA 84
+Q+++ PL KP + P + + + P P G P + P P ER
Sbjct: 83 EQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEG---PQTAEGPQPPERK 139
Query: 85 SKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQK 144
RR RTAFTQ Q++ LEN F + YP + RE LA +
Sbjct: 140 ------------------------RRRRTAFTQFQLQELENFFDESQYPDVVARERLAAR 175
Query: 145 LNLEEDRIQIWFQNRRAKLKRSHR 168
LNL EDR+Q+WFQNRRAK KR+ R
Sbjct: 176 LNLTEDRVQVWFQNRRAKWKRNQR 199
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 77.8 bits (190), Expect = 5e-15
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 20 SFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCLHVPNPPSGISFPSVVDHPM 79
+FS+ +L L++ D V A + G+ G L P SG P + +
Sbjct: 33 NFSVSHLLDLEEAGDMVA--------AQADENVGEAGRSLLESPGLTSGSDTPQQDNDQL 84
Query: 80 PEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRE 139
E K + RR RT F +Q++ LE VF YP +RE
Sbjct: 85 NSEEKKKRKQ-------------------RRNRTTFNSSQLQALERVFERTHYPDAFVRE 125
Query: 140 DLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKN 178
DLA+++NL E R+Q+WFQNRRAK +R+ R ++A KN
Sbjct: 126 DLARRVNLTEARVQVWFQNRRAKFRRNERA---MLANKN 161
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 77.8 bits (190), Expect = 5e-15
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 20 SFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCLHVPNPPSGISFPSVVDHPM 79
+FS+ +L L++ D V A + G+ G L P SG P + +
Sbjct: 33 NFSVSHLLDLEEAGDMVA--------AQADENVGEAGRSLLESPGLTSGSDTPQQDNDQL 84
Query: 80 PEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRE 139
E K + RR RT F +Q++ LE VF YP +RE
Sbjct: 85 NSEEKKKRKQ-------------------RRNRTTFNSSQLQALERVFERTHYPDAFVRE 125
Query: 140 DLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKN 178
DLA+++NL E R+Q+WFQNRRAK +R+ R ++A KN
Sbjct: 126 DLARRVNLTEARVQVWFQNRRAKFRRNERA---MLANKN 161
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 72.4 bits (176), Expect = 2e-13
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 84 ASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQ 143
+S E+ A RL LKR+L +R RT+FTQ QIE LE F YP + RE LA
Sbjct: 191 SSNGEDSDEAQMRLQLKRKL-----QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 245
Query: 144 KLNLEEDRIQIWFQNRRAKLKRSHR 168
K++L E RIQ+WF NRRAK +R +
Sbjct: 246 KIDLPEARIQVWFSNRRAKWRREEK 270
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 72.4 bits (176), Expect = 2e-13
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 84 ASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQ 143
+S E+ A RL LKR+L +R RT+FTQ QIE LE F YP + RE LA
Sbjct: 205 SSNGEDSDEAQMRLQLKRKL-----QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 259
Query: 144 KLNLEEDRIQIWFQNRRAKLKRSHR 168
K++L E RIQ+WF NRRAK +R +
Sbjct: 260 KIDLPEARIQVWFSNRRAKWRREEK 284
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 72.4 bits (176), Expect = 2e-13
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 84 ASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQ 143
+S E+ A RL LKR+L +R RT+FTQ QIE LE F YP + RE LA
Sbjct: 191 SSNGEDSDEAQMRLQLKRKL-----QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 245
Query: 144 KLNLEEDRIQIWFQNRRAKLKRSHR 168
K++L E RIQ+WF NRRAK +R +
Sbjct: 246 KIDLPEARIQVWFSNRRAKWRREEK 270
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 72.4 bits (176), Expect = 2e-13
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT Q+E LE VF+ YP + +RE LA + L E R+Q+WFQNRRAK ++ R
Sbjct: 133 RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRER 192
Query: 169 ESQFLMAKKNF 179
Q AK +F
Sbjct: 193 YGQIQQAKSHF 203
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 71.2 bits (173), Expect = 5e-13
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT Q+E LE VF+ YP + RE LA + +L E R+Q+WFQNRRAK ++ R
Sbjct: 215 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274
Query: 169 ESQFLMAKKNFNT 181
Q + +F+T
Sbjct: 275 FGQMQQVRTHFST 287
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 70.9 bits (172), Expect = 6e-13
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT F +Q++ LE VF YP +RE+LA+++NL E R+Q+WFQNRRAK +R+ R
Sbjct: 105 RRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER 164
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 70.9 bits (172), Expect = 6e-13
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT Q+E LE VF YP + RE+LA K+NL E R+Q+WFQNRRAK +++ R
Sbjct: 39 RRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT+ Q++VLE +F YP I +RE++A K+NL E R+Q+WF+NRRAK ++ +
Sbjct: 39 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 98
Query: 169 ESQ 171
+ Q
Sbjct: 99 QQQ 101
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT+ Q++VLE +F YP I +RE++A K+NL E R+Q+WF+NRRAK ++ +
Sbjct: 47 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 106
Query: 169 ESQ 171
+ Q
Sbjct: 107 QQQ 109
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 69.3 bits (168), Expect = 2e-12
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 66 PSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLEN 125
P S ++ DH A Y+ F+ L+ KR + RR RT FT Q++ LE
Sbjct: 62 PGSCSLGTLRDHQSSPYAAVPYK-LFTDHGGLNEKR-----KQRRIRTTFTSAQLKELER 115
Query: 126 VFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
VF YP I RE+LA K++L E R+Q+WFQNRRAK ++ R
Sbjct: 116 VFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 68.6 bits (166), Expect = 3e-12
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT++Q++VLE +F YP I +RE++A K+NL E R+Q+WF+NRRAK ++ +
Sbjct: 39 RRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 98
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 68.2 bits (165), Expect = 4e-12
Identities = 36/98 (36%), Positives = 54/98 (55%)
Query: 82 ERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDL 141
E A K ++ +E + + R RR RT FT Q++ LE F+ N YP + RE++
Sbjct: 66 EAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 125
Query: 142 AQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNF 179
A NL E R+++WF+NRRAK ++ R Q + K F
Sbjct: 126 AVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGF 163
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 68.2 bits (165), Expect = 4e-12
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RTAFT Q+E LE F+ YP + +RE LA NL E R+Q+WF+NRRAK ++ R
Sbjct: 72 RRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQR 131
Query: 169 ESQ 171
Q
Sbjct: 132 SLQ 134
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 68.2 bits (165), Expect = 4e-12
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RTAFT Q+E LE F+ YP + +RE LA NL E R+Q+WF+NRRAK ++ R
Sbjct: 67 RRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQR 126
Query: 169 ESQ 171
Q
Sbjct: 127 SLQ 129
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 67.8 bits (164), Expect = 5e-12
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 67 SGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENV 126
S + ++ DH A Y+ +F L KR + RR RT FT Q++ LE V
Sbjct: 55 SNCALGALRDHQPAPYSAVPYK-FFPEPSGLHEKR-----KQRRIRTTFTSAQLKELERV 108
Query: 127 FRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
F YP I RE+LA K++L E R+Q+WFQNRRAK ++ R
Sbjct: 109 FAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 67.4 bits (163), Expect = 7e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 107 RGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRS 166
R RR RT FT Q++ LE F+ N YP + RE++A NL E R+++WF+NRRAK ++
Sbjct: 38 RQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 97
Query: 167 HRESQFLMAKKNF 179
R Q + K F
Sbjct: 98 ERNQQAELCKNGF 110
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 67.4 bits (163), Expect = 7e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 107 RGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRS 166
R RR RT FT Q++ LE F+ N YP + RE++A NL E R+++WF+NRRAK ++
Sbjct: 84 RQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 143
Query: 167 HRESQFLMAKKNF 179
R Q + K F
Sbjct: 144 ERNQQAELCKNGF 156
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 67.4 bits (163), Expect = 7e-12
Identities = 33/62 (53%), Positives = 40/62 (64%)
Query: 107 RGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRS 166
RGRR R +T +Q EVL F N YPGI RE LAQ + + E R+QIWFQN R++ R
Sbjct: 156 RGRRRRLVWTPSQSEVLRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQ 215
Query: 167 HR 168
HR
Sbjct: 216 HR 217
Score = 61.2 bits (147), Expect = 5e-10
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 108 GRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAK 162
GRR RTA T +Q +L F + +PGI RE+LA++ L E RIQIWFQNRRA+
Sbjct: 232 GRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRAR 286
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 67.4 bits (163), Expect = 7e-12
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT++Q+E LE +F YP + RE++A K+NL E R+Q+WF+NRRAK ++ +
Sbjct: 40 RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99
Query: 169 ESQ 171
+ +
Sbjct: 100 QQK 102
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 67.0 bits (162), Expect = 9e-12
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 81 EERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED 140
E+ S+ N AS L +++ RR RT FT +Q+E LE F YP + RE
Sbjct: 143 EDSQSEDRNDLKASPTLGKRKK------RRHRTVFTAHQLEELEKAFSEAHYPDVYAREM 196
Query: 141 LAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
LA K L EDRIQ+WFQNRRAK ++ +
Sbjct: 197 LAVKTELPEDRIQVWFQNRRAKWRKREK 224
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 66.6 bits (161), Expect = 1e-11
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 92 SASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDR 151
S SE LKR + RR RT FT Q+E LE F+ YP + RE+LA +L+L E R
Sbjct: 317 SDSEEGLLKR-----KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEAR 371
Query: 152 IQIWFQNRRAKLKRSHR 168
+Q+WFQNRRAK ++ +
Sbjct: 372 VQVWFQNRRAKWRKREK 388
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 65.9 bits (159), Expect = 2e-11
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 82 ERASKYENYFSASERLSLKRELSWYRGR---RPRTAFTQNQIEVLENVFRVNCYPGIDIR 138
+ AS S+S+R K L+ + R R RT FT Q+E LE F YP + R
Sbjct: 119 QTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAR 178
Query: 139 EDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
E LA K L EDRIQ+WFQNRRAK ++ +
Sbjct: 179 EMLAMKTELPEDRIQVWFQNRRAKWRKREK 208
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT Q++ LE F+ N YP + RE++A NL E R+++WF+NRRAK ++ R
Sbjct: 63 RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 122
Query: 169 ESQFLMAKKNF 179
Q + K +F
Sbjct: 123 SQQAELCKGSF 133
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 65.9 bits (159), Expect = 2e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168
RR RT FT Q++ LE F+ N YP + +RE++A NL E R+++WF+NRRAK ++ R
Sbjct: 90 RRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRER 149
Query: 169 ESQFLMAKKNF 179
Q + K +
Sbjct: 150 NQQLDLCKGGY 160
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 65.9 bits (159), Expect = 2e-11
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 107 RGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRS 166
RGRR R +T +Q E L F N YPGI RE LAQ + + E R+QIWFQN R++ R
Sbjct: 79 RGRRRRLVWTPSQSEALRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQ 138
Query: 167 HR 168
HR
Sbjct: 139 HR 140
Score = 61.2 bits (147), Expect = 5e-10
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 108 GRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAK 162
GRR RTA T +Q +L F + +PGI RE+LA++ L E RIQIWFQNRRA+
Sbjct: 155 GRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRAR 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,815,254
Number of Sequences: 37866
Number of extensions: 367769
Number of successful extensions: 1345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 330
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.