VSX1 694

Name: VSX1	Sequence: fasta or formatted (365aa)		NCBI GI: 11056038
Description: visual system homeobox 1 isoform a		Referenced in: Homeobox and Related Proteins
Other entries for this name: alt prot [239aa] visual system homeobox 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.9 36 3 C cysteine 1.6 6 1 D aspartate 4.9 18 1 E glutamate 6.3 23 2 F phenylalanine 1.9 7 1 G glycine 12.6 46 2 H histidine 1.9 7 1 I isoleucine 1.4 5 1 K lysine 5.2 19 2 L leucine 10.1 37 3 M methionine 1.9 7 1 N asparagine 1.4 5 1 P proline 9.6 35 3 Q glutamine 3.3 12 1 R arginine 7.7 28 2 S serine 10.4 38 3 T threonine 3.3 12 1 V valine 4.1 15 1 W tryptophan 1.4 5 1 Y tyrosine 1.1 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 visual system homeobox 1 isoform a VSX1 0.558 visual system homeobox 1 isoform b VSX2 0.293 visual system homeobox 2 ALX1 0.114 cartilage paired-class homeoprotein 1 ALX4 0.114 aristaless-like homeobox 4 ALX3 0.114 aristaless-like homeobox 3 RAX 0.113 retina and anterior neural fold homeobox OTP 0.108 PREDICTED: orthopedia homeobox OTP 0.108 orthopedia homeobox ARX 0.108 aristaless related homeobox PAX7 0.107 paired box 7 isoform 1 PAX7 0.107 paired box 7 isoform 2 PAX7 0.107 paired box 7 isoform 3 RAX2 0.106 retina and anterior neural fold homeobox 2 PAX3 0.104 paired box 3 isoform PAX3i PAX3 0.104 paired box 3 isoform PAX3g PAX3 0.104 paired box 3 isoform PAX3h PAX3 0.104 paired box 3 isoform PAX3e PAX3 0.104 paired box 3 isoform PAX3d PAX3 0.104 paired box 3 isoform PAX3 PAX6 0.104 paired box gene 6 isoform a PAX6 0.104 paired box gene 6 isoform b PAX6 0.104 paired box gene 6 isoform a PHOX2B 0.100 paired-like homeobox 2b UNCX 0.097 UNC homeobox PHOX2A 0.097 paired-like homeobox 2a ISX 0.094 intestine-specific homeobox DRGX 0.093 dorsal root ganglia homeobox ESX1 0.093 extraembryonic, spermatogenesis, homeobox 1-like [Ho... DMBX1 0.092 diencephalon/mesencephalon homeobox 1 isoform b [Hom... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.