VSX2 26407

Name: VSX2	Sequence: fasta or formatted (361aa)		NCBI GI: 34365783
Description: visual system homeobox 2		Referenced in: Homeobox and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.2 37 3 C cysteine 0.8 3 1 D aspartate 4.7 17 1 E glutamate 9.4 34 4 F phenylalanine 1.7 6 1 G glycine 8.0 29 2 H histidine 2.2 8 1 I isoleucine 2.5 9 1 K lysine 7.2 26 2 L leucine 9.7 35 2 M methionine 3.3 12 1 N asparagine 1.4 5 1 P proline 7.2 26 2 Q glutamine 4.2 15 1 R arginine 6.9 25 2 S serine 10.0 36 3 T threonine 4.2 15 1 V valine 3.6 13 1 W tryptophan 1.1 4 1 Y tyrosine 1.7 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 visual system homeobox 2 VSX1 0.304 visual system homeobox 1 isoform a VSX1 0.131 visual system homeobox 1 isoform b ALX4 0.130 aristaless-like homeobox 4 ALX1 0.121 cartilage paired-class homeoprotein 1 ALX3 0.118 aristaless-like homeobox 3 ARX 0.117 aristaless related homeobox RAX 0.111 retina and anterior neural fold homeobox RAX2 0.108 retina and anterior neural fold homeobox 2 UNCX 0.107 UNC homeobox PHOX2B 0.104 paired-like homeobox 2b PAX6 0.104 paired box gene 6 isoform a PAX6 0.104 paired box gene 6 isoform b PAX6 0.104 paired box gene 6 isoform a DRGX 0.101 dorsal root ganglia homeobox PAX7 0.099 paired box 7 isoform 1 PAX7 0.099 paired box 7 isoform 2 PAX7 0.099 paired box 7 isoform 3 PHOX2A 0.099 paired-like homeobox 2a OTP 0.098 PREDICTED: orthopedia homeobox OTP 0.098 orthopedia homeobox DMBX1 0.097 diencephalon/mesencephalon homeobox 1 isoform b [Hom... DMBX1 0.097 diencephalon/mesencephalon homeobox 1 isoform a [Hom... GSC 0.097 goosecoid PAX3 0.097 paired box 3 isoform PAX3i PAX3 0.097 paired box 3 isoform PAX3g PAX3 0.097 paired box 3 isoform PAX3h PAX3 0.097 paired box 3 isoform PAX3e PAX3 0.097 paired box 3 isoform PAX3d PAX3 0.097 paired box 3 isoform PAX3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.