Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GCDH Sequence: fasta or formatted (438aa) NCBI GI: 4503943
Description:

glutaryl-Coenzyme A dehydrogenase isoform a precursor

Referenced in:

Amino Acid Catabolism
Mitochondria

Other entries for this name:
alt prot [428aa] glutaryl-Coenzyme A dehydrogenase isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         37           2
 C cysteine            2.1          9           1
 D aspartate           3.9         17           1
 E glutamate           6.4         28           2
 F phenylalanine       2.5         11           1
 G glycine             9.8         43           2
 H histidine           2.3         10           1
 I isoleucine          5.0         22           2
 K lysine              3.7         16           2
 L leucine            11.9         52           2
 M methionine          3.4         15           1
 N asparagine          3.7         16           2
 P proline             3.7         16           1
 Q glutamine           4.3         19           1
 R arginine            7.3         32           1
 S serine              7.5         33           2
 T threonine           5.0         22           2
 V valine              5.0         22           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutaryl-Coenzyme A dehydrogenase isoform a precursor... 
GCDH                  0.945   glutaryl-Coenzyme A dehydrogenase isoform b precursor...
ACADS                 0.176   short-chain acyl-CoA dehydrogenase precursor 
IVD                   0.158   isovaleryl Coenzyme A dehydrogenase isoform 1 [Homo...
ACADSB                0.153   acyl-Coenzyme A dehydrogenase, short/branched chain p...
IVD                   0.144   isovaleryl Coenzyme A dehydrogenase isoform 2 [Homo...
ACADVL                0.144   acyl-Coenzyme A dehydrogenase, very long chain isofor...
ACADVL                0.144   acyl-Coenzyme A dehydrogenase, very long chain isofo...
ACAD9                 0.137   acyl-Coenzyme A dehydrogenase family, member 9 [Homo...
ACADM                 0.135   medium-chain acyl-CoA dehydrogenase isoform b precu...
ACADM                 0.135   medium-chain acyl-CoA dehydrogenase isoform a precurs...
ACADL                 0.115   long-chain acyl-CoA dehydrogenase precursor 
ACAD8                 0.113   acyl-Coenzyme A dehydrogenase family, member 8 
ACAD10                0.054   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACAD10                0.054   acyl-Coenzyme A dehydrogenase family, member 10 isof...
ACOXL                 0.041   acyl-Coenzyme A oxidase-like 2 
ACAD11                0.040   putative acyl-CoA dehydrogenase 
ACOXL                 0.032   acyl-Coenzyme A oxidase-like 3 
ACOXL                 0.032   acyl-Coenzyme A oxidase-like 1 
ACOX3                 0.027   acyl-Coenzyme A oxidase 3 isoform b 
ACOX3                 0.027   acyl-Coenzyme A oxidase 3 isoform a 
ACAD10                0.025   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACOX2                 0.016   acyl-Coenzyme A oxidase 2 
ARHGEF17              0.014   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
ACOX1                 0.012   acyl-Coenzyme A oxidase 1 isoform b 
ACOX1                 0.011   acyl-Coenzyme A oxidase 1 isoform a 
ATG4C                 0.008   APG4 autophagy 4 homolog C isoform 8 
ATG4C                 0.008   APG4 autophagy 4 homolog C isoform 7 
EDEM3                 0.008   ER degradation enhancer, mannosidase alpha-like 3 [...
G0S2                  0.008   G0/G1switch 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press