Guide to the Human Genome
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Name: ACADSB Sequence: fasta or formatted (432aa) NCBI GI: 4501859
Description:

acyl-Coenzyme A dehydrogenase, short/branched chain precursor

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         38           2
 C cysteine            1.4          6           1
 D aspartate           3.5         15           1
 E glutamate           7.2         31           2
 F phenylalanine       4.2         18           1
 G glycine             8.8         38           2
 H histidine           2.1          9           1
 I isoleucine          7.2         31           1
 K lysine              6.7         29           2
 L leucine             9.7         42           2
 M methionine          2.5         11           2
 N asparagine          3.7         16           2
 P proline             3.2         14           2
 Q glutamine           4.6         20           2
 R arginine            3.5         15           2
 S serine              6.9         30           2
 T threonine           6.2         27           2
 V valine              5.1         22           1
 W tryptophan          0.7          3           1
 Y tyrosine            3.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acyl-Coenzyme A dehydrogenase, short/branched chain p... 
ACADS                 0.314   short-chain acyl-CoA dehydrogenase precursor 
ACADM                 0.264   medium-chain acyl-CoA dehydrogenase isoform b precu...
ACADM                 0.264   medium-chain acyl-CoA dehydrogenase isoform a precurs...
IVD                   0.263   isovaleryl Coenzyme A dehydrogenase isoform 1 [Homo...
ACAD9                 0.245   acyl-Coenzyme A dehydrogenase family, member 9 [Homo...
IVD                   0.242   isovaleryl Coenzyme A dehydrogenase isoform 2 [Homo...
ACAD8                 0.239   acyl-Coenzyme A dehydrogenase family, member 8 
ACADL                 0.232   long-chain acyl-CoA dehydrogenase precursor 
ACADVL                0.219   acyl-Coenzyme A dehydrogenase, very long chain isofor...
ACADVL                0.219   acyl-Coenzyme A dehydrogenase, very long chain isofo...
GCDH                  0.156   glutaryl-Coenzyme A dehydrogenase isoform a precursor...
GCDH                  0.151   glutaryl-Coenzyme A dehydrogenase isoform b precursor...
ACAD10                0.121   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACAD10                0.121   acyl-Coenzyme A dehydrogenase family, member 10 isof...
ACAD11                0.118   putative acyl-CoA dehydrogenase 
ACOXL                 0.065   acyl-Coenzyme A oxidase-like 2 
ACOXL                 0.049   acyl-Coenzyme A oxidase-like 3 
ACOXL                 0.049   acyl-Coenzyme A oxidase-like 1 
ACAD10                0.042   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACOX3                 0.041   acyl-Coenzyme A oxidase 3 isoform b 
ACOX3                 0.041   acyl-Coenzyme A oxidase 3 isoform a 
ACOX1                 0.018   acyl-Coenzyme A oxidase 1 isoform a 
SLC12A8               0.012   solute carrier family 12, member 8 
ACOX2                 0.011   acyl-Coenzyme A oxidase 2 
ACOX1                 0.010   acyl-Coenzyme A oxidase 1 isoform b 
TGFBR2                0.006   transforming growth factor, beta receptor II isoform...
TRIM3                 0.005   tripartite motif-containing 3 
TRIM3                 0.005   tripartite motif-containing 3 
POLR2B                0.005   DNA directed RNA polymerase II polypeptide B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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