Guide to the Human Genome
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Name: ACADS Sequence: fasta or formatted (412aa) NCBI GI: 4557233
Description:

short-chain acyl-CoA dehydrogenase precursor

Referenced in:

Fatty Acid Oxidation and Ketone Bodies

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.0         62           3
 C cysteine            1.5          6           1
 D aspartate           3.9         16           1
 E glutamate           6.1         25           2
 F phenylalanine       3.2         13           1
 G glycine             8.5         35           2
 H histidine           1.5          6           1
 I isoleucine          6.3         26           1
 K lysine              5.3         22           2
 L leucine            10.4         43           2
 M methionine          3.9         16           1
 N asparagine          2.4         10           2
 P proline             4.1         17           1
 Q glutamine           4.1         17           1
 R arginine            5.1         21           2
 S serine              6.1         25           2
 T threonine           5.3         22           2
 V valine              3.6         15           2
 W tryptophan          1.5          6           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   short-chain acyl-CoA dehydrogenase precursor 
ACADSB                0.332   acyl-Coenzyme A dehydrogenase, short/branched chain p...
ACADM                 0.306   medium-chain acyl-CoA dehydrogenase isoform b precu...
ACADM                 0.304   medium-chain acyl-CoA dehydrogenase isoform a precurs...
IVD                   0.297   isovaleryl Coenzyme A dehydrogenase isoform 1 [Homo...
ACAD8                 0.287   acyl-Coenzyme A dehydrogenase family, member 8 
IVD                   0.280   isovaleryl Coenzyme A dehydrogenase isoform 2 [Homo...
ACAD9                 0.251   acyl-Coenzyme A dehydrogenase family, member 9 [Homo...
ACADL                 0.236   long-chain acyl-CoA dehydrogenase precursor 
ACADVL                0.236   acyl-Coenzyme A dehydrogenase, very long chain isofor...
ACADVL                0.236   acyl-Coenzyme A dehydrogenase, very long chain isofo...
GCDH                  0.191   glutaryl-Coenzyme A dehydrogenase isoform a precursor...
GCDH                  0.180   glutaryl-Coenzyme A dehydrogenase isoform b precursor...
ACAD10                0.149   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACAD10                0.149   acyl-Coenzyme A dehydrogenase family, member 10 isof...
ACAD11                0.135   putative acyl-CoA dehydrogenase 
ACOXL                 0.084   acyl-Coenzyme A oxidase-like 2 
ACOXL                 0.073   acyl-Coenzyme A oxidase-like 3 
ACOXL                 0.073   acyl-Coenzyme A oxidase-like 1 
ACAD10                0.052   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACOX3                 0.045   acyl-Coenzyme A oxidase 3 isoform b 
ACOX3                 0.045   acyl-Coenzyme A oxidase 3 isoform a 
ACOX1                 0.038   acyl-Coenzyme A oxidase 1 isoform b 
ACOX1                 0.031   acyl-Coenzyme A oxidase 1 isoform a 
ACOX2                 0.018   acyl-Coenzyme A oxidase 2 
SLC22A8               0.013   solute carrier family 22 member 8 
FAM3C                 0.005   family with sequence similarity 3, member C precurso...
FAM3C                 0.005   family with sequence similarity 3, member C precursor...
BTN3A3                0.005   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.005   butyrophilin, subfamily 3, member A3 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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