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Search of human proteins with 4503771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo
sapiens]
(379 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo ... 785 0.0
gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo... 585 e-167
gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo... 532 e-151
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 80 4e-15
gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens] 80 4e-15
gi|153792604 protein prenyltransferase alpha subunit repeat cont... 46 6e-05
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 40 0.003
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 39 0.006
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 37 0.029
gi|4503825 frizzled 1 [Homo sapiens] 37 0.038
gi|9257222 forkhead box O1 [Homo sapiens] 37 0.038
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 37 0.038
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 37 0.038
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 36 0.050
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 36 0.050
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 36 0.050
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 36 0.050
gi|189491742 ataxin 7 isoform b [Homo sapiens] 36 0.050
gi|4506797 ataxin 7 isoform a [Homo sapiens] 36 0.050
gi|147902746 MEX3A protein [Homo sapiens] 36 0.050
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 36 0.050
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.085
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.085
gi|18426913 drebrin 1 isoform b [Homo sapiens] 35 0.085
gi|18426915 drebrin 1 isoform a [Homo sapiens] 35 0.085
gi|45827729 scribble isoform b [Homo sapiens] 35 0.085
gi|45827731 scribble isoform a [Homo sapiens] 35 0.085
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 35 0.11
gi|4507877 vinculin isoform VCL [Homo sapiens] 35 0.11
gi|7669550 vinculin isoform meta-VCL [Homo sapiens] 35 0.11
>gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo
sapiens]
Length = 379
Score = 785 bits (2028), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
Sbjct: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
Query: 61 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 120
PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT
Sbjct: 61 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 120
Query: 121 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 180
RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR
Sbjct: 121 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 180
Query: 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240
DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR
Sbjct: 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240
Query: 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300
YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL
Sbjct: 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300
Query: 301 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360
DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG
Sbjct: 301 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360
Query: 361 RSLQSKHSTENDSPTNVQQ 379
RSLQSKHSTENDSPTNVQQ
Sbjct: 361 RSLQSKHSTENDSPTNVQQ 379
>gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo
sapiens]
Length = 288
Score = 585 bits (1507), Expect = e-167
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156
RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT
Sbjct: 6 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 65
Query: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW
Sbjct: 66 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 125
Query: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276
DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA
Sbjct: 126 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 185
Query: 277 WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336
WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK
Sbjct: 186 WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 245
Query: 337 ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 379
ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ
Sbjct: 246 ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 288
>gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo
sapiens]
Length = 312
Score = 532 bits (1370), Expect = e-151
Identities = 278/380 (73%), Positives = 289/380 (76%), Gaps = 69/380 (18%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
MAATEGVGEAAQGGEPGQPAQP P Q H + E +A+ + S
Sbjct: 1 MAATEGVGEAAQGGEPGQPAQP--------PPQPHPPPPQQQHKEEMAAEAGEAVAS--- 49
Query: 61 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 120
P +DG
Sbjct: 50 ------------------PMDDG------------------------------------- 54
Query: 121 RDAIELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179
+ L++ +Y ++ HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL
Sbjct: 55 --FVSLDSPSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 112
Query: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ
Sbjct: 113 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 172
Query: 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299
RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL
Sbjct: 173 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 232
Query: 300 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359
LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI
Sbjct: 233 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 292
Query: 360 GRSLQSKHSTENDSPTNVQQ 379
GRSLQSKHSTENDSPTNVQQ
Sbjct: 293 GRSLQSKHSTENDSPTNVQQ 312
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 79.7 bits (195), Expect = 4e-15
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHE-------EMNYITAI 158
Q E E +LT + N T+W+ RR +L+ L QK E E+ ++ +
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESC 99
Query: 159 IEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
+ PK+Y WHHR L+ L +P ++ELE A L D +N+H W +R++V + +
Sbjct: 100 LRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVP 159
Query: 217 D-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNTTGYNDRAVLEREVQYTLEMI 267
EL + D L+ + N S W+ R ++ S G VL +E++
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAF 219
Query: 268 KLVPHNESAWNYLKGIL 284
P+++SAW Y + +L
Sbjct: 220 FTDPNDQSAWFYHRWLL 236
>gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 79.7 bits (195), Expect = 4e-15
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHE-------EMNYITAI 158
Q E E +LT + N T+W+ RR +L+ L QK E E+ ++ +
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESC 99
Query: 159 IEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
+ PK+Y WHHR L+ L +P ++ELE A L D +N+H W +R++V + +
Sbjct: 100 LRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVP 159
Query: 217 D-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNTTGYNDRAVLEREVQYTLEMI 267
EL + D L+ + N S W+ R ++ S G VL +E++
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAF 219
Query: 268 KLVPHNESAWNYLKGIL 284
P+++SAW Y + +L
Sbjct: 220 FTDPNDQSAWFYHRWLL 236
>gi|153792604 protein prenyltransferase alpha subunit repeat
containing 1 [Homo sapiens]
Length = 402
Score = 45.8 bits (107), Expect = 6e-05
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
L RDE + +T + LN T W+ R+ L+ S + ++++ + + PK+
Sbjct: 82 LNRDELID----VTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSP 137
Query: 167 QVWHHRR-VLVEWLRDPS-----------------------QELEFIADILNQDAKNYHA 202
+ W HRR VL + +++ S +E+E + + NY+A
Sbjct: 138 ETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNA 197
Query: 203 WQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN--DRAV 255
W HR WV+Q + K+ +EL V ++S ++ R F++ + D +V
Sbjct: 198 WSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSV 257
Query: 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ-------LLDLQPSHSS 308
+E+ E + P +E A + + P+LL + L+D P H +
Sbjct: 258 MEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHET 311
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 2 AATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHK---EEMAAEAGEAVASPMDDGFVSL 58
AAT ++ G PPP PHPP P H + ++ + A SP D GF+SL
Sbjct: 441 AATSPGSLSSSSGHGSGSYPPPPGPHPPLPHPLHHGPGQRPSSGSASASGSPSDPGFMSL 500
Query: 59 D 59
D
Sbjct: 501 D 501
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAA 41
G+G Q + QPAQPPP PPPPQQQ +++ +A
Sbjct: 233 GLGSQQQPQQQQQPAQPPPP--PPPPQQQQQQKTSA 266
Score = 29.6 bits (65), Expect = 4.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEA 43
M + G+G +Q + Q Q P QP PPPP Q +++ A
Sbjct: 226 MHSLYGLGLGSQ--QQPQQQQQPAQPPPPPPPPQQQQQQKTSA 266
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 37.0 bits (84), Expect = 0.029
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCSYPSED 730
>gi|4503825 frizzled 1 [Homo sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.038
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAV 47
GV A G PGQ P QP PPP QQQ ++ E G +V
Sbjct: 69 GVRAQAAGQGPGQGPGPGQQPPPPPQQQQSGQQYNGERGISV 110
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 36.6 bits (83), Expect = 0.038
Identities = 21/49 (42%), Positives = 22/49 (44%)
Query: 2 AATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASP 50
AAT G+ QG E G PPQP PP P QH A AG P
Sbjct: 101 AATGGLCGDFQGPEAGCLHPAPPQPPPPGPLSQHPPVPPAAAGPLAGQP 149
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.6 bits (83), Expect = 0.038
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSED 730
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.6 bits (83), Expect = 0.038
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSED 730
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVL 65
G + Q + QP PPPQP P PPQ Q ++EM SP+D +S S SY
Sbjct: 340 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMG-------RSPVDS--LSSSSSSY-- 387
Query: 66 YRDRAEWADIDPVPQNDGPNPVV 88
D ++ D P+ D +P+V
Sbjct: 388 --DGSDRED----PRGDFHSPIV 404
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVL 65
G + Q + QP PPPQP P PPQ Q ++EM SP+D +S S SY
Sbjct: 348 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMG-------RSPVDS--LSSSSSSY-- 395
Query: 66 YRDRAEWADIDPVPQNDGPNPVV 88
D ++ D P+ D +P+V
Sbjct: 396 --DGSDRED----PRGDFHSPIV 412
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVL 65
G + Q + QP PPPQP P PPQ Q ++EM SP+D +S S SY
Sbjct: 408 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMG-------RSPVDS--LSSSSSSY-- 455
Query: 66 YRDRAEWADIDPVPQNDGPNPVV 88
D ++ D P+ D +P+V
Sbjct: 456 --DGSDRED----PRGDFHSPIV 472
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVL 65
G + Q + QP PPPQP P PPQ Q ++EM SP+D +S S SY
Sbjct: 410 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMG-------RSPVDS--LSSSSSSY-- 457
Query: 66 YRDRAEWADIDPVPQNDGPNPVV 88
D ++ D P+ D +P+V
Sbjct: 458 --DGSDRED----PRGDFHSPIV 474
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 2 AATEGVGEAAQGGEPGQPAQ---PPPQP----HPPPPQQQHKEEMAAEAGEAVASPMDDG 54
AA G AA + Q Q PPPQP HPPPP ++ + E + G AS
Sbjct: 18 AAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPE---DGGPGAASTSAAA 74
Query: 55 FVS------LDSPSYVLYRDRAEWADIDPVPQNDG 83
+ L SP +L + W + +P DG
Sbjct: 75 MATVGERRPLPSPEVMLGQSWNLWVEASKLPGKDG 109
Score = 32.7 bits (73), Expect = 0.55
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 18 QPAQPPPQPHPPPP---QQQHKEE---MAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAE 71
QP QP PHP PP Q+ H+ + +E+ VAS SL P +
Sbjct: 406 QPPQPLRDPHPAPPRTSQEPHQNPHGVIPSESKPFVASKPKPHTPSLPRPPGCPAQQGGS 465
Query: 72 WADIDPVPQNDGPNP 86
A IDP P ++ P+P
Sbjct: 466 -APIDPPPVHESPHP 479
Score = 30.8 bits (68), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 10 AAQGGEPGQPAQPPP---QPHPPPPQQQHKEEMAAEAGE 45
A QGG P PPP PHPP P + +++E GE
Sbjct: 460 AQQGGSA--PIDPPPVHESPHPPLPATEPASRLSSEEGE 496
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 2 AATEGVGEAAQGGEPGQPAQ---PPPQP----HPPPPQQQHKEEMAAEAGEAVASPMDDG 54
AA G AA + Q Q PPPQP HPPPP ++ + E + G AS
Sbjct: 18 AAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPE---DGGPGAASTSAAA 74
Query: 55 FVS------LDSPSYVLYRDRAEWADIDPVPQNDG 83
+ L SP +L + W + +P DG
Sbjct: 75 MATVGERRPLPSPEVMLGQSWNLWVEASKLPGKDG 109
Score = 32.7 bits (73), Expect = 0.55
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 18 QPAQPPPQPHPPPP---QQQHKEE---MAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAE 71
QP QP PHP PP Q+ H+ + +E+ VAS SL P +
Sbjct: 406 QPPQPLRDPHPAPPRTSQEPHQNPHGVIPSESKPFVASKPKPHTPSLPRPPGCPAQQGGS 465
Query: 72 WADIDPVPQNDGPNP 86
A IDP P ++ P+P
Sbjct: 466 -APIDPPPVHESPHP 479
Score = 30.8 bits (68), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 10 AAQGGEPGQPAQPPP---QPHPPPPQQQHKEEMAAEAGE 45
A QGG P PPP PHPP P + +++E GE
Sbjct: 460 AQQGGSA--PIDPPPVHESPHPPLPATEPASRLSSEEGE 496
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 36.2 bits (82), Expect = 0.050
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 8 GEAAQGGEPGQPAQP--PPQPHPPPP 31
GE GG G PAQP PPQP PPPP
Sbjct: 59 GEDGGGGGGGAPAQPAAPPQPAPPPP 84
Score = 35.0 bits (79), Expect = 0.11
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 8 GEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASP 50
G GG P QPA PP PPPP AA A + P
Sbjct: 62 GGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPP 104
Score = 30.0 bits (66), Expect = 3.6
Identities = 19/77 (24%), Positives = 28/77 (36%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVL 65
G G AQ P QPA PPP PP + A D +L + +
Sbjct: 66 GGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAPKGASDAKLCALYKEAELR 125
Query: 66 YRDRAEWADIDPVPQND 82
+ + + PVP ++
Sbjct: 126 LKGSSNTTECVPVPTSE 142
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 36.2 bits (82), Expect = 0.050
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPP----------PPQQQHKEEMAAEAG 44
+ A E GE G EPG+PA+P P+P P P EE+ AEAG
Sbjct: 73 LTAAEAAGEEGPG-EPGRPAEPQPEPEEPAEVGAEEPAQPEPGAGPEELEAEAG 125
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.4 bits (80), Expect = 0.085
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 16 PGQPAQPPPQPHPP----PPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPS 62
PG P QPPPQP PP PPQ K + + + +S S S S
Sbjct: 62 PGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSS 112
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.4 bits (80), Expect = 0.085
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 16 PGQPAQPPPQPHPP----PPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPS 62
PG P QPPPQP PP PPQ K + + + +S S S S
Sbjct: 62 PGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSS 112
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 35.4 bits (80), Expect = 0.085
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 AQPPPQPHPPPPQQQHKE--------EMAAEAGEAVASPMDD 53
+QPPP P PPPP Q+ +E E A A +A A PM++
Sbjct: 364 SQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEE 405
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 35.4 bits (80), Expect = 0.085
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 AQPPPQPHPPPPQQQHKE--------EMAAEAGEAVASPMDD 53
+QPPP P PPPP Q+ +E E A A +A A PM++
Sbjct: 362 SQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEE 403
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 35.4 bits (80), Expect = 0.085
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 3 ATEGVGEAAQGGEPGQ-PAQPPPQPHPPPPQQQH-----KEEMAAEAGEAVASPMDDGFV 56
+ + V A GG+ + P P Q P PP K+ A A + P +D
Sbjct: 1279 SVQRVPSGAAGGKMAESPCSPSGQQPPSPPSPDELPANVKQAYRAFAAVPTSHPPEDAPA 1338
Query: 57 S------LDSPSYVLYRDRAEWADIDP-VPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQR 109
SP + +R+R ++ +++ VPQ +GP V ++ +D R + + LQ
Sbjct: 1339 QPPTPGPAASPEQLSFRERQKYFELEVRVPQAEGPPKRVSLVGADDLRKMQEEEARKLQ- 1397
Query: 110 DERSERAFKLTRDAIELNA 128
++ ++ R+A E A
Sbjct: 1398 ----QKRAQMLREAAEAGA 1412
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 35.4 bits (80), Expect = 0.085
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 3 ATEGVGEAAQGGEPGQ-PAQPPPQPHPPPPQQQH-----KEEMAAEAGEAVASPMDDGFV 56
+ + V A GG+ + P P Q P PP K+ A A + P +D
Sbjct: 1279 SVQRVPSGAAGGKMAESPCSPSGQQPPSPPSPDELPANVKQAYRAFAAVPTSHPPEDAPA 1338
Query: 57 S------LDSPSYVLYRDRAEWADIDP-VPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQR 109
SP + +R+R ++ +++ VPQ +GP V ++ +D R + + LQ
Sbjct: 1339 QPPTPGPAASPEQLSFRERQKYFELEVRVPQAEGPPKRVSLVGADDLRKMQEEEARKLQ- 1397
Query: 110 DERSERAFKLTRDAIELNA 128
++ ++ R+A E A
Sbjct: 1398 ----QKRAQMLREAAEAGA 1412
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.11
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 13 GGEPGQPAQPPPQPHPPPPQQQHKEE 38
G EPG A PPP P PPPP + +E+
Sbjct: 552 GQEPGGLALPPPPPPPPPPPPRSREQ 577
>gi|4507877 vinculin isoform VCL [Homo sapiens]
Length = 1066
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPP-----------------------PQPHPPPPQQQHKE 37
+ A V EA Q EP P PP P P PPPP+++ +E
Sbjct: 825 LGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEE 884
Query: 38 EMAAEAGEAVASPM 51
+AGE + PM
Sbjct: 885 FPEQKAGEVINQPM 898
>gi|7669550 vinculin isoform meta-VCL [Homo sapiens]
Length = 1134
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPP-----------------------PQPHPPPPQQQHKE 37
+ A V EA Q EP P PP P P PPPP+++ +E
Sbjct: 825 LGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEE 884
Query: 38 EMAAEAGEAVASPM 51
+AGE + PM
Sbjct: 885 FPEQKAGEVINQPM 898
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,492,192
Number of Sequences: 37866
Number of extensions: 850222
Number of successful extensions: 14430
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 10978
Number of HSP's gapped (non-prelim): 2590
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.