Guide to the Human Genome
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Name: GTF3C3 Sequence: fasta or formatted (886aa) NCBI GI: 6912398
Description:

general transcription factor IIIC, polypeptide 3, 102kDa

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
RNA Polymerase and General Transcription Factors
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         64           2
 C cysteine            1.6         14           1
 D aspartate           5.6         50           2
 E glutamate          10.2         90          15
 F phenylalanine       3.3         29           1
 G glycine             4.5         40           1
 H histidine           2.4         21           2
 I isoleucine          4.9         43           2
 K lysine              5.5         49           2
 L leucine            12.8        113           3
 M methionine          3.5         31           2
 N asparagine          4.5         40           1
 P proline             3.4         30           2
 Q glutamine           4.3         38           3
 R arginine            5.2         46           3
 S serine              7.4         66           3
 T threonine           3.6         32           2
 V valine              5.1         45           2
 W tryptophan          0.7          6           2
 Y tyrosine            4.4         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor IIIC, polypeptide 3, 102... 
ATRX                  0.021   transcriptional regulator ATRX isoform 2 
ATRX                  0.021   transcriptional regulator ATRX isoform 1 
MYT1                  0.017   myelin transcription factor 1 
SLC24A1               0.017   solute carrier family 24 (sodium/potassium/calcium ex...
OGT                   0.016   O-linked GlcNAc transferase isoform 2 
OGT                   0.016   O-linked GlcNAc transferase isoform 1 
WDR87                 0.014   NYD-SP11 protein 
YTHDC1                0.014   splicing factor YT521-B isoform 2 
YTHDC1                0.014   splicing factor YT521-B isoform 1 
TMTC1                 0.013   transmembrane and tetratricopeptide repeat containin...
DCAF8L2               0.013   DDB1 and CUL4 associated factor 8-like 2 
RPGR                  0.013   retinitis pigmentosa GTPase regulator isoform C [Hom...
CLSPN                 0.013   claspin 
CCAR1                 0.013   cell-cycle and apoptosis regulatory protein 1 
SETD1A                0.013   SET domain containing 1A 
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
CALD1                 0.013   caldesmon 1 isoform 5 
CALD1                 0.013   caldesmon 1 isoform 2 
MYST4                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
BCL11A                0.012   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.012   B-cell CLL/lymphoma 11A isoform 2 
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
ZFHX3                 0.012   AT-binding transcription factor 1 
CHIC1                 0.012   cysteine-rich hydrophobic domain 1 
CENPB                 0.012   centromere protein B 
LOC100133599          0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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