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Search of human proteins with 4503041
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503041 corticotropin releasing hormone precursor [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 389 e-108
gi|4507803 urocortin preproprotein [Homo sapiens] 52 3e-07
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 43 2e-04
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 43 2e-04
gi|33286436 gametogenetin [Homo sapiens] 40 0.001
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 39 0.002
gi|119943102 CREB binding protein isoform b [Homo sapiens] 39 0.004
gi|119943104 CREB binding protein isoform a [Homo sapiens] 39 0.004
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.006
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 37 0.011
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 37 0.014
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 36 0.018
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 36 0.018
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 36 0.018
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|169211910 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|169211055 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|169636435 caudal type homeobox 2 [Homo sapiens] 35 0.041
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.041
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.041
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.041
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 34 0.070
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.070
gi|119395716 forkhead box C1 [Homo sapiens] 34 0.091
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 34 0.091
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 33 0.12
gi|142976757 immediate early response 5 [Homo sapiens] 33 0.12
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 33 0.12
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.16
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.16
>gi|4503041 corticotropin releasing hormone precursor [Homo sapiens]
Length = 196
Score = 389 bits (998), Expect = e-108
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 60
MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
Sbjct: 1 MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 60
Query: 61 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 120
ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
Sbjct: 61 ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL 120
Query: 121 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 180
LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
Sbjct: 121 LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL 180
Query: 181 AQQAHSNRKLMEIIGK 196
AQQAHSNRKLMEIIGK
Sbjct: 181 AQQAHSNRKLMEIIGK 196
>gi|4507803 urocortin preproprotein [Homo sapiens]
Length = 124
Score = 52.0 bits (123), Expect = 3e-07
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 132 LAERGARNALGGHQ---EAPERERRSEEPPISLDLTFHLLREVLEMARAEQLAQQAHSNR 188
LAER R A G A ER RR + P +S+DLTFHLLR +LE+AR + ++A NR
Sbjct: 58 LAERFPRRAGPGRLGLGTAGERPRR-DNPSLSIDLTFHLLRTLLELARTQSQRERAEQNR 116
Query: 189 KLMEIIGK 196
+ + +GK
Sbjct: 117 IIFDSVGK 124
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 43.1 bits (100), Expect = 2e-04
Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 32/183 (17%)
Query: 39 QHPQPLDFFQPPPQ--------SEQPQQPQARPVLLRMGEEYFLRLGNLNKS--PAAPLS 88
+ P PLD +QPPP QP P P L + + LG S AA
Sbjct: 537 REPAPLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQQRASLPQAATFG 596
Query: 89 PASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNAL------- 141
S L GS RP +A + + + L RR L S L ER R A
Sbjct: 597 ELSGPLKPGSPYRPPVPRAPDPAY--IYDEFLQQRRRLVSKLDLEERRRREAQEKGYYYD 654
Query: 142 --GGHQEAPERERR------SEEPPISLD-----LTFHLLREVLEMARAEQLAQQAHSNR 188
+ E+ E E R +E+PP+ LD L F L + + E+L Q R
Sbjct: 655 LDDSYDESDEEEVRAHLRCVAEQPPLKLDTSSEKLEFLQLFGLTTQQQKEELVAQKRRKR 714
Query: 189 KLM 191
+ M
Sbjct: 715 RRM 717
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 43.1 bits (100), Expect = 2e-04
Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 32/183 (17%)
Query: 39 QHPQPLDFFQPPPQ--------SEQPQQPQARPVLLRMGEEYFLRLGNLNKS--PAAPLS 88
+ P PLD +QPPP QP P P L + + LG S AA
Sbjct: 641 REPAPLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQQRASLPQAATFG 700
Query: 89 PASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNAL------- 141
S L GS RP +A + + + L RR L S L ER R A
Sbjct: 701 ELSGPLKPGSPYRPPVPRAPDPAY--IYDEFLQQRRRLVSKLDLEERRRREAQEKGYYYD 758
Query: 142 --GGHQEAPERERR------SEEPPISLD-----LTFHLLREVLEMARAEQLAQQAHSNR 188
+ E+ E E R +E+PP+ LD L F L + + E+L Q R
Sbjct: 759 LDDSYDESDEEEVRAHLRCVAEQPPLKLDTSSEKLEFLQLFGLTTQQQKEELVAQKRRKR 818
Query: 189 KLM 191
+ M
Sbjct: 819 RRM 821
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 16 LLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYF-- 73
L P PP R L + VP R Q P PL+ ++PPP +QP R + +
Sbjct: 142 LKPPPPPRQLSVKDTVP--RAPSQFPPPLETWKPPPPLPSERQPADRRITPALATPASPP 199
Query: 74 --LRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDSPAA 131
+ G N+ A + + G G P + + +L + R SL PAA
Sbjct: 200 TESQAGPRNQGQTAGRARGGAPPHAGEGEMAQPADSESG-LSLLCKITFKSRPSLAPPAA 258
Query: 132 LAERGARNALGG 143
+ A+ +LGG
Sbjct: 259 SSSLAAKASLGG 270
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 39.3 bits (90), Expect = 0.002
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQP--PPQSEQPQQPQARPVLLRMGEEYFLRLG 77
PP + P AR+ P P P QP PPQ +QP PQ +P E +R G
Sbjct: 192 PPAGPRRAPPPAVAAREPPLPPPP----QPPAPPQQQQPPPPQPQP----PPEGGAVRAG 243
Query: 78 NLNKSPAAPLSPASSLL----AGGSGSRPS--------PEQATA--NFFRVLLQQLLLPR 123
A P+S + +GG+G R + E+A A R L L LPR
Sbjct: 244 ----GAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPR 299
Query: 124 --RSLDSPAALAERGARNALGGHQEAPERERRSEE 156
R +P A + R +R+ GG + E+E ++
Sbjct: 300 GDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDD 334
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 38.5 bits (88), Expect = 0.004
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQP-------PPQSEQPQQPQARPVLLRMGE-- 70
PP + +S+G VPGA P PL+ P PP ++ P P P G
Sbjct: 775 PPAQTGVSQGQVPGAAL----PNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPS 830
Query: 71 -EYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSP 104
++ G PAAP P++ + + G P+P
Sbjct: 831 LQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTP 865
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 38.5 bits (88), Expect = 0.004
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQP-------PPQSEQPQQPQARPVLLRMGE-- 70
PP + +S+G VPGA P PL+ P PP ++ P P P G
Sbjct: 813 PPAQTGVSQGQVPGAAL----PNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPS 868
Query: 71 -EYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSP 104
++ G PAAP P++ + + G P+P
Sbjct: 869 LQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTP 903
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 32 PGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLR-MGEEYFLRLGNLNKSPAAPLSPA 90
P Q P HPQP QPPP P Q ++PV+ + G + S A P +P
Sbjct: 82 PPPHQPPPHPQPHQQQQPPP----PPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPP 137
Query: 91 SSLLAGGSGSRPSP 104
+S GSG P+P
Sbjct: 138 TSGAPPGSGPGPTP 151
Score = 30.8 bits (68), Expect = 0.77
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 30 PVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSP 89
P P Q Q P P QPPPQ P QP P + + P P
Sbjct: 61 PPPPPHQQQQQPPPQ---QPPPQQPPPHQPPPHP-----------QPHQQQQPPPPPQDS 106
Query: 90 ASSLLAGGSGSRP 102
+ ++A G G P
Sbjct: 107 SKPVVAQGPGPAP 119
Score = 29.6 bits (65), Expect = 1.7
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 29 GPVPGARQAPQHPQPLDFFQPPPQSEQPQQP 59
GP P P H Q QPPPQ PQQP
Sbjct: 55 GPKPPIPPPPPHQQQQ---QPPPQQPPPQQP 82
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 37.0 bits (84), Expect = 0.011
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 32 PGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSPAS 91
P Q PQ PQP P PQ QPQQPQ +P + + + + N P +PL
Sbjct: 367 PQQPQQPQQPQPPQQQPPQPQQPQPQQPQ-QPQQPPQQQSHLVPVSLSNLIPGSPLPHVG 425
Query: 92 SLL 94
+ L
Sbjct: 426 AAL 428
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 26 LSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ 60
LS G V A Q PQ PQ QP P +QP QPQ
Sbjct: 356 LSLGNVT-AWQQPQQPQQPQ--QPQPPQQQPPQPQ 387
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 36.6 bits (83), Expect = 0.014
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 26/103 (25%)
Query: 29 GPVPGARQAPQHPQPLDFFQPPPQSEQPQ-QPQARPVLLRMGEEYFLRLGNLNKSPAAP- 86
GPVPG AP PP Q E PQ P + + EEY+ ++G + P AP
Sbjct: 589 GPVPGPAPAPA--------APPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQPQQPGAPP 640
Query: 87 -----------LSPASSLLAGGS-----GSRPSPEQATANFFR 113
+ + GG GS+P A A ++R
Sbjct: 641 QQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDYSAAWAEYYR 683
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 36.2 bits (82), Expect = 0.018
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQP-QQPQARP 63
PP P P + P PQP QPPP +QP QQPQ +P
Sbjct: 1643 PPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQPQP 1687
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARP 63
PP + P P + APQ P P Q PQ QPQQP P
Sbjct: 1652 PPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQ-PQPQQPPPPP 1694
Score = 28.9 bits (63), Expect = 2.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQP 59
PP + + P P +Q Q PQP PPP Q Q P
Sbjct: 1662 PPPQPQPAPQPPPPQQQPQQQPQPQPQQPPPPPPPQQQPP 1701
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 36.2 bits (82), Expect = 0.018
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQP-QQPQARP 63
PP P P + P PQP QPPP +QP QQPQ +P
Sbjct: 1643 PPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQPQP 1687
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARP 63
PP + P P + APQ P P Q PQ QPQQP P
Sbjct: 1652 PPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQ-PQPQQPPPPP 1694
Score = 28.9 bits (63), Expect = 2.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQP 59
PP + + P P +Q Q PQP PPP Q Q P
Sbjct: 1662 PPPQPQPAPQPPPPQQQPQQQPQPQPQQPPPPPPPQQQPP 1701
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 36.2 bits (82), Expect = 0.018
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQP-QQPQARP 63
PP P P + P PQP QPPP +QP QQPQ +P
Sbjct: 1643 PPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQPQP 1687
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARP 63
PP + P P + APQ P P Q PQ QPQQP P
Sbjct: 1652 PPPPPQQPQPPPPQPQPAPQPPPPQQQPQQQPQ-PQPQQPPPPP 1694
Score = 28.9 bits (63), Expect = 2.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQP 59
PP + + P P +Q Q PQP PPP Q Q P
Sbjct: 1662 PPPQPQPAPQPPPPQQQPQQQPQPQPQQPPPPPPPQQQPP 1701
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.4 bits (80), Expect = 0.031
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 33 GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSPASS 92
G R P+ P PL P PQ+ + +Q + RP+L R PA P
Sbjct: 27 GYRGTPRRPPPLP---PGPQAWRGEQRRGRPLLGRAPRA---------SVPAPRAFPNLV 74
Query: 93 LLAGGSGSRPSPEQA 107
L GG SRPSP A
Sbjct: 75 TLGGGCASRPSPSSA 89
>gi|169211910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.4 bits (80), Expect = 0.031
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 33 GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSPASS 92
G R P+ P PL P PQ+ + +Q + RP+L R PA P
Sbjct: 27 GYRGTPRRPPPLP---PGPQAWRGEQRRGRPLLGRAPRA---------SVPAPRAFPNLV 74
Query: 93 LLAGGSGSRPSPEQA 107
L GG SRPSP A
Sbjct: 75 TLGGGCASRPSPSSA 89
>gi|169211055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.4 bits (80), Expect = 0.031
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 33 GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSPASS 92
G R P+ P PL P PQ+ + +Q + RP+L R PA P
Sbjct: 27 GYRGTPRRPPPLP---PGPQAWRGEQRRGRPLLGRAPRA---------SVPAPRAFPNLV 74
Query: 93 LLAGGSGSRPSPEQA 107
L GG SRPSP A
Sbjct: 75 TLGGGCASRPSPSSA 89
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 35.0 bits (79), Expect = 0.041
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 19/67 (28%)
Query: 36 QAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLA 95
Q Q QP QPPP QP QPQ P+ +S PLSP SSL A
Sbjct: 250 QQQQQQQPP---QPPPPPPQPPQPQPGPL----------------RSVPEPLSPVSSLQA 290
Query: 96 GGSGSRP 102
GS P
Sbjct: 291 SVPGSVP 297
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 35.0 bits (79), Expect = 0.041
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 24 ALLSRGPVP----GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNL 79
A L+ GP P G P+P PPP + + P+ P E L G+L
Sbjct: 2189 ATLASGPQPFLPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDL 2248
Query: 80 NKSPAAPLSPASSLLAGGSGSRP 102
+ S A+ L+ S AGG+ P
Sbjct: 2249 SDSSASSLAEPESPGAGGTSGGP 2271
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.0 bits (79), Expect = 0.041
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 24 ALLSRGPVP----GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNL 79
A L+ GP P G P+P PPP + + P+ P E L G+L
Sbjct: 2105 ATLASGPQPFLPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDL 2164
Query: 80 NKSPAAPLSPASSLLAGGSGSRP 102
+ S A+ L+ S AGG+ P
Sbjct: 2165 SDSSASSLAEPESPGAGGTSGGP 2187
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.0 bits (79), Expect = 0.041
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 24 ALLSRGPVP----GARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNL 79
A L+ GP P G P+P PPP + + P+ P E L G+L
Sbjct: 2105 ATLASGPQPFLPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDL 2164
Query: 80 NKSPAAPLSPASSLLAGGSGSRP 102
+ S A+ L+ S AGG+ P
Sbjct: 2165 SDSSASSLAEPESPGAGGTSGGP 2187
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 34.3 bits (77), Expect = 0.070
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 31 VPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKSPAAPL--S 88
VPGAR +P P QPPP + P PQA + L + S PL S
Sbjct: 26 VPGARASPAPSGPRGMQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPS 85
Query: 89 PASSLLA 95
PAS LA
Sbjct: 86 PASLQLA 92
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 34.3 bits (77), Expect = 0.070
Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 23 RALLSRGPVPGARQAPQH--------PQPLDFF---QPPPQSEQPQQPQARPVLLRMGEE 71
++L GP+P A P H PQP PP+ E P P L +G +
Sbjct: 985 KSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQ 1044
Query: 72 YFL---RLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDS 128
L R G + +P AP GG GS P L+ LP R+ +
Sbjct: 1045 PSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGP----------ALRYFQLPPRAASA 1094
Query: 129 PAALAERGARNALG 142
+ R R G
Sbjct: 1095 AMYVPARSGRGRKG 1108
Score = 28.1 bits (61), Expect = 5.0
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 28 RGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGN-LNKSPAA- 85
+GP+ + PQ P P P PQ P + E+ + + + K+P+
Sbjct: 1107 KGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTS 1166
Query: 86 ---------------PLSPASSLLAGGSGSRPSPEQA 107
P P + GG GS PSP A
Sbjct: 1167 SSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPA 1203
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 33.9 bits (76), Expect = 0.091
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 36/178 (20%)
Query: 23 RALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLNKS 82
R L P PG + P P+ D P PQ P + + + G S
Sbjct: 188 RLHLKEPPPPGRQPPPAPPEQADGNAPGPQ---PPPVRIQDIKTENGT---------CPS 235
Query: 83 PAAPLSPASSLLAGGSGSRP---SPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARN 139
P PLSPA++L +G + + P SP+ ++++ L P SL S L
Sbjct: 236 PPQPLSPAAALGSGSAAAVPKIESPDSSSSS-----LSSGSSPPGSLPSARPL------- 283
Query: 140 ALGGHQEAPERERRSEEPP-----ISLDLTFHLLREVLEMARAE----QLAQQAHSNR 188
+L G AP S PP S+D LR + A AE LA A S+R
Sbjct: 284 SLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAAELSSGLLASAAASSR 341
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.091
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 23/105 (21%)
Query: 19 CPPCRALLSRGPVPGARQAPQHPQPL----DFFQPPPQSEQPQQPQARPVLLRMGEEYFL 74
C P RA L P+PG + + P PL FQ PPQ Q A P G + FL
Sbjct: 302 CSP-RASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPA--PPGSQPFL 358
Query: 75 RL----------GNLNKSPAAPLSPASSLLAGGSGSRPSPEQATA 109
+ G LN PA P ++ L+ S +QATA
Sbjct: 359 QKKRHGRPGAGGGKLNPPPAPPARSPTTELSSKS------QQATA 397
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/108 (34%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 22 CRALLSRGP-VPGARQAPQHPQPLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLRLGNLN 80
CR + GP VP R AP PL PPP P P P+LL + L L L
Sbjct: 22 CRCPRAAGPGVPEPRAAPL---PLLAMAPPPACRSPMSPPPPPLLLLL-----LSLALLG 73
Query: 81 KSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDS 128
A PA S A + SRP + F + LQ L SLD+
Sbjct: 74 ARARA--EPAGS--AVPAQSRPCVDCHAFEFMQRALQDLRKTACSLDA 117
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 33.5 bits (75), Expect = 0.12
Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 26/144 (18%)
Query: 21 PCRALLSRG----PVPGARQAPQHP---QPLDFFQPPPQSEQPQQPQARPVLLRMGEEYF 73
PC L G P P +Q P P P + +PPP + + P+ P R
Sbjct: 51 PCPGLYLAGPAGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDA 110
Query: 74 LRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLLLPRRSLDSPAALA 133
R+G ++ P A ++ + GG + A + RV + P A
Sbjct: 111 PRVG--DEVPVATVTGVGDVFQGGEA-----DATEAAWSRV------------EGPRQAA 151
Query: 134 ERGARNALGGHQEAPERERRSEEP 157
R A GG PE R + P
Sbjct: 152 AREAEGTAGGWGVFPEVSRAARRP 175
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 33.5 bits (75), Expect = 0.12
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 35 RQAPQHPQPLDFFQPPPQSEQP-QQPQARP 63
+Q PQ QP QP PQ +QP QQPQA P
Sbjct: 101 QQQPQQQQPQQQPQPQPQQQQPQQQPQALP 130
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 15 ALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARP 63
A+LP P L +R P P + PQ PQP QP PQ P QPQ +P
Sbjct: 390 AMLPGSP---LFTRAPPPKLQPQPQ-PQPQPQSQPQPQL--PPQPQTQP 432
Score = 30.8 bits (68), Expect = 0.77
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQ----PLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLR 75
PP + P P APQHPQ P++ P P +E +P+ +L + L
Sbjct: 425 PPQPQTQPQTPTP----APQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPV-----LE 475
Query: 76 LGNLNKSPAA-PLSP 89
G++++ P A PLSP
Sbjct: 476 AGDVDEGPVARPLSP 490
Score = 27.3 bits (59), Expect = 8.5
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 34 ARQAPQHPQPLDFFQPPPQS-----EQPQQPQARPVLLRMGEEYFLRLGNLN 80
AR P P P PP S EQPQ + R VL + G R LN
Sbjct: 575 ARAGPPAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLN 626
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 15 ALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQARP 63
A+LP P L +R P P + PQ PQP QP PQ P QPQ +P
Sbjct: 390 AMLPGSP---LFTRAPPPKLQPQPQ-PQPQPQSQPQPQL--PPQPQTQP 432
Score = 30.8 bits (68), Expect = 0.77
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 20 PPCRALLSRGPVPGARQAPQHPQ----PLDFFQPPPQSEQPQQPQARPVLLRMGEEYFLR 75
PP + P P APQHPQ P++ P P +E +P+ +L + L
Sbjct: 425 PPQPQTQPQTPTP----APQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPV-----LE 475
Query: 76 LGNLNKSPAA-PLSP 89
G++++ P A PLSP
Sbjct: 476 AGDVDEGPVARPLSP 490
Score = 27.3 bits (59), Expect = 8.5
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 34 ARQAPQHPQPLDFFQPPPQS-----EQPQQPQARPVLLRMGEEYFLRLGNLN 80
AR P P P PP S EQPQ + R VL + G R LN
Sbjct: 575 ARAGPPAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLN 626
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,331,923
Number of Sequences: 37866
Number of extensions: 560313
Number of successful extensions: 4256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 3529
Number of HSP's gapped (non-prelim): 856
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.