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Search of human proteins with 4502895
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502895 colipase preproprotein [Homo sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502895 colipase preproprotein [Homo sapiens] 234 1e-62
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 55 1e-08
gi|155029556 hypothetical protein LOC389383 [Homo sapiens] 37 0.003
gi|239744776 PREDICTED: hypothetical protein [Homo sapiens] 34 0.029
gi|169205072 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|113424011 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|24041035 notch 2 preproprotein [Homo sapiens] 33 0.064
gi|46397353 Notch homolog 2 N-terminal like protein [Homo sapiens] 33 0.064
gi|66346689 dickkopf homolog 3 precursor [Homo sapiens] 31 0.19
gi|40548393 dickkopf homolog 3 precursor [Homo sapiens] 31 0.19
gi|40548389 dickkopf homolog 3 precursor [Homo sapiens] 31 0.19
gi|148833508 notch1 preproprotein [Homo sapiens] 30 0.32
gi|31317224 EGF-like repeats and discoidin I-like domains-contai... 30 0.32
gi|7110719 dickkopf homolog 1 precursor [Homo sapiens] 30 0.54
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 29 0.71
gi|14165282 prokineticin 1 [Homo sapiens] 28 1.2
gi|13569952 keratin associated protein 9-9 [Homo sapiens] 28 1.2
gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] 28 2.1
gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] 28 2.1
gi|157384973 tenascin R [Homo sapiens] 27 2.7
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 27 3.5
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 27 4.6
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 27 4.6
gi|32698876 COX assembly mitochondrial protein homolog [Homo sap... 27 4.6
gi|46250735 keratin associated protein 10-2 [Homo sapiens] 26 6.0
gi|75750531 ankyrin repeat and MYND domain containing 1 isoform ... 26 6.0
gi|16118240 keratin associated protein 9.2 [Homo sapiens] 26 6.0
gi|75750529 ankyrin repeat and MYND domain containing 1 isoform ... 26 6.0
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 26 7.8
>gi|4502895 colipase preproprotein [Homo sapiens]
Length = 112
Score = 234 bits (596), Expect = 1e-62
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA 60
MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
Sbjct: 1 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA 60
Query: 61 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ 112
SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
Sbjct: 61 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ 112
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 55.1 bits (131), Expect = 1e-08
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 28 LENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCE 87
LE E C+ + C++ CCQ + + C SE S C + +G Y CPC R LTC
Sbjct: 33 LELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCI 92
Query: 88 GDKTIVGSITNTNFGICHDAGRSK 111
K + +G C GR K
Sbjct: 93 YSKN--EKWLSIAYGRCQKIGRQK 114
>gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
Length = 100
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 34 CMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTC 86
C + ++C S CC G A C A C +T CPC GLTC
Sbjct: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTC 86
>gi|239744776 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 4 ILILLLVALSVAYAAPGPRGIIINLEN---GELCMNSAQCKSNCCQHSSALGLARCT 57
+L+LLL+ L + A GP+ + NL + GE C +C+SNCC +S CT
Sbjct: 9 LLLLLLLLLLGSMAGYGPQKKL-NLSHKGIGEPCRRHEECQSNCCTINSLAPHTLCT 64
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 30 NGELCMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
NG+ C + +C S CC RC ++C
Sbjct: 120 NGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQC 156
>gi|169205072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 4 ILILLLVALSVAYAAPGPRGIIINLEN---GELCMNSAQCKSNCCQHSSALGLARCT 57
+L+LLL+ L + A GP+ + NL + GE C +C+SNCC +S CT
Sbjct: 9 LLLLLLLLLLGSMAGYGPQKKL-NLSHKGIGEPCGRHEECQSNCCTINSLAPHTLCT 64
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 30 NGELCMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
NG+ C + +C S CC RC ++C
Sbjct: 120 NGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQC 156
>gi|113424011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 4 ILILLLVALSVAYAAPGPRGIIINLEN---GELCMNSAQCKSNCCQHSSALGLARCT 57
+L+LLL+ L + A GP+ + NL + GE C +C+SNCC +S CT
Sbjct: 9 LLLLLLLLLLGSMAGYGPQKKL-NLSHKGIGEPCGRHEECQSNCCTINSLAPHTLCT 64
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 30 NGELCMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
NG+ C + +C S CC RC ++C
Sbjct: 120 NGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQC 156
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 31 GELCMNSAQCKSNCCQH------SSALGLARCTSMASENSE-CSVKTLYGIYYKCPCERG 83
GE C + C+ N CQ+ + LG A C + E C T + + PC G
Sbjct: 59 GEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNG 118
Query: 84 LTC 86
TC
Sbjct: 119 GTC 121
>gi|46397353 Notch homolog 2 N-terminal like protein [Homo
sapiens]
Length = 236
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 31 GELCMNSAQCKSNCCQH------SSALGLARCTSMASENSE-CSVKTLYGIYYKCPCERG 83
GE C + C+ N CQ+ + LG A C + E C T + + PC G
Sbjct: 20 GEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNG 79
Query: 84 LTC 86
TC
Sbjct: 80 GTC 82
>gi|66346689 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 30 NGELCMNSAQCKSN-CCQHSSALGLARCTSMASENSECSVKTLY------------GIYY 76
NG +C N C+ CC L CT + E C G
Sbjct: 204 NGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALD 263
Query: 77 KCPCERGLTCE 87
+CPC GL C+
Sbjct: 264 RCPCASGLLCQ 274
>gi|40548393 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 30 NGELCMNSAQCKSN-CCQHSSALGLARCTSMASENSECSVKTLY------------GIYY 76
NG +C N C+ CC L CT + E C G
Sbjct: 204 NGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALD 263
Query: 77 KCPCERGLTCE 87
+CPC GL C+
Sbjct: 264 RCPCASGLLCQ 274
>gi|40548389 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 30 NGELCMNSAQCKSN-CCQHSSALGLARCTSMASENSECSVKTLY------------GIYY 76
NG +C N C+ CC L CT + E C G
Sbjct: 204 NGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALD 263
Query: 77 KCPCERGLTCE 87
+CPC GL C+
Sbjct: 264 RCPCASGLLCQ 274
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 66 CSV--KTLYGIYYKCPCE-RGLTCEGDKTIVGSITNTNFGICHDAGRS 110
C+V T G KCP G TCE D GS+ N G C RS
Sbjct: 1322 CAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRS 1369
>gi|31317224 EGF-like repeats and discoidin I-like
domains-containing protein 3 [Homo sapiens]
Length = 480
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 4 ILILLLVALSVAYAAPGPRGIIIN---LENGELCMNSAQCKSNCCQHSSALGLARCTSMA 60
+ + LLV LS+ G +G I + ENG +C+ S C+ C+S+
Sbjct: 5 VAVWLLVGLSLGVPQFG-KGDICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVV 63
Query: 61 SENSECSVKTLYGIYYKCPCERGLTCE 87
S+ T G PC G TCE
Sbjct: 64 EVASDEEEPTSAGPCTPNPCHNGGTCE 90
>gi|7110719 dickkopf homolog 1 precursor [Homo sapiens]
Length = 266
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 29 ENGELCMNSAQCKSN-CCQHSSALGLARCTSMASENSECSVKTLYG-----IYYKCPCER 82
+ G +C+ S+ C S CC + C + E C+ G I+ +C C
Sbjct: 184 QEGSVCLRSSDCASGLCCARHFWSKI--CKPVLKEGQVCTKHRRKGSHGLEIFQRCYCGE 241
Query: 83 GLTCEGDK 90
GL+C K
Sbjct: 242 GLSCRIQK 249
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 29.3 bits (64), Expect = 0.71
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 24 IIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKC----- 78
++I ++N N+ +C SN CQ++S C + +N T + C
Sbjct: 18 LLIYIKNSFCNKNNTRCLSNSCQNNST-----CKDFSKDNDCSCSDTANNLDKDCDNMKD 72
Query: 79 -----PCERGLTC---EGDKTIV--------GSITNTNFGIC 104
PC+ TC G+++ + G+I T G C
Sbjct: 73 PCFSNPCQGSATCVNTPGERSFLCKCPPGYSGTICETTIGSC 114
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 31 GELC-MNSAQCKSNCCQHSSALG------LARCTSMASENSECSVKTLYGIYYKCPCERG 83
G+ C +N+ +C S C H CT + C +TL + + PC
Sbjct: 256 GDHCELNTDECASQPCLHGGLCVDGENRYSCNCTGSGFTGTHC--ETLMPLCWSKPCHNN 313
Query: 84 LTCE 87
TCE
Sbjct: 314 ATCE 317
>gi|14165282 prokineticin 1 [Homo sapiens]
Length = 105
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 34 CMNSAQCKSN-CCQHSSAL-GLARCTSMASENSEC---SVKTLY---GIYYKCPCERGLT 85
C QC + CC S L GL CT + E EC S K + ++ CPC L
Sbjct: 26 CERDVQCGAGTCCAISLWLRGLRMCTPLGREGEECHPGSHKVPFFRKRKHHTCPCLPNLL 85
Query: 86 C 86
C
Sbjct: 86 C 86
>gi|13569952 keratin associated protein 9-9 [Homo sapiens]
Length = 154
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 34 CMNSAQCKSNCCQH---SSALGLARCTSMASENSECS 67
C + C++ CCQ SS G C S ++S C+
Sbjct: 56 CCQNTCCRTTCCQPTCLSSCCGQTSCGSSCGQSSSCA 92
>gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]
Length = 259
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 31 GELCMNSAQC-KSNCCQHSSALGLARCTSMASENSECSVKTLYG-----IYYKCPCERGL 84
G+ C+ S+ C + CC + C + + C+ + G I+ +C C +GL
Sbjct: 180 GDPCLRSSDCIEGFCCARHFWTKI--CKPVLHQGEVCTKQRKKGSHGLEIFQRCDCAKGL 237
Query: 85 TCE 87
+C+
Sbjct: 238 SCK 240
>gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
Length = 108
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 4 ILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSN-CCQHSSALGLAR-CTSMAS 61
+L+LLL+ + G +I C +QC CC S + R CT M
Sbjct: 9 LLLLLLLPPLLLTPRAGDAAVITGA-----CDKDSQCGGGMCCAVSIWVKSIRICTPMGK 63
Query: 62 ENSECSVKT----LYG--IYYKCPCERGLTC 86
C T +G +++ CPC GL C
Sbjct: 64 LGDSCHPLTRKVPFFGRRMHHTCPCLPGLAC 94
>gi|157384973 tenascin R [Homo sapiens]
Length = 1358
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 INLENGELCMNSAQCKSNCCQHSSALG 52
I + E+ + QC +NCCQ S+A G
Sbjct: 141 IEMLEREVSVLRDQCNANCCQESAATG 167
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 34 CMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLY 72
C +S+ C S+CCQ S C S C V Y
Sbjct: 134 CCSSSGCGSSCCQSS-------CCKPCCSQSRCCVPVCY 165
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 31 GELC-MNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCE---RGLTC 86
GELC N C + C HS RC + ++ + C C+ +G TC
Sbjct: 630 GELCDTNPNDCLPDPC-HSRG----RCYDLVND-------------FYCACDDGWKGKTC 671
Query: 87 EGDKTIVGSITNTNFGICHDAG 108
+ + T +N G C+D+G
Sbjct: 672 HSREFQCDAYTCSNGGTCYDSG 693
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 31 GELC-MNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCE---RGLTC 86
GELC N C + C HS RC + ++ + C C+ +G TC
Sbjct: 668 GELCDTNPNDCLPDPC-HSRG----RCYDLVND-------------FYCACDDGWKGKTC 709
Query: 87 EGDKTIVGSITNTNFGICHDAG 108
+ + T +N G C+D+G
Sbjct: 710 HSREFQCDAYTCSNGGTCYDSG 731
>gi|32698876 COX assembly mitochondrial protein homolog [Homo
sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 32 ELCMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
E C Q + CC++S L + +C S EC
Sbjct: 29 ERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKEC 63
>gi|46250735 keratin associated protein 10-2 [Homo sapiens]
Length = 255
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 38 AQCKSNCCQHSSALGLARCTSMASENSECS 67
A C S+CC+ SS++ L C + S + CS
Sbjct: 218 ACCTSSCCRPSSSVSLL-CRPVCSRPASCS 246
>gi|75750531 ankyrin repeat and MYND domain containing 1 isoform 2
[Homo sapiens]
Length = 717
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 9 LVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSV 68
LV S+ + G ++ N + G LC + +SN C ++ L++ S S +
Sbjct: 296 LVKGSLGHVESGLEDVLGNTDRGSLCSAETKFESNVCVCDFSIELSQAMLERSAQSHSLL 355
Query: 69 K 69
K
Sbjct: 356 K 356
>gi|16118240 keratin associated protein 9.2 [Homo sapiens]
Length = 174
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 34 CMNSAQCKSNCCQHSSALGLARCTSMASENSECS 67
C ++ C+ CC SS G C S ++S C+
Sbjct: 80 CCSTPCCQPTCCG-SSCCGQTSCGSSCGQSSSCA 112
>gi|75750529 ankyrin repeat and MYND domain containing 1 isoform 1
[Homo sapiens]
Length = 941
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 9 LVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSV 68
LV S+ + G ++ N + G LC + +SN C ++ L++ S S +
Sbjct: 437 LVKGSLGHVESGLEDVLGNTDRGSLCSAETKFESNVCVCDFSIELSQAMLERSAQSHSLL 496
Query: 69 K 69
K
Sbjct: 497 K 497
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 34 CMNSAQCKSNCC-QHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLT 85
C +S ++C Q S RC S + ++ CS ++ C C+ T
Sbjct: 88 CQSSGTSSTSCSWQFSRTSSTCRCQSSRTSSTSCSCQSSRTSSTSCSCQSSRT 140
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 34 CMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
C +S+ C S+CCQ S C S++S C
Sbjct: 253 CCSSSGCGSSCCQSSC------CNPCCSQSSCC 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,400,554
Number of Sequences: 37866
Number of extensions: 169905
Number of successful extensions: 588
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 52
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.