Guide to the Human Genome
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Search of human proteins with 4502617

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502617 cyclin D2 [Homo sapiens]
         (289 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502617 cyclin D2 [Homo sapiens]                                   582   e-166
gi|16950655 cyclin D1 [Homo sapiens]                                  358   2e-99
gi|4502619 cyclin D3 isoform 2 [Homo sapiens]                         351   4e-97
gi|209862835 cyclin D3 isoform 1 [Homo sapiens]                       248   4e-66
gi|209915553 cyclin D3 isoform 3 [Homo sapiens]                       166   2e-41
gi|4502613 cyclin A [Homo sapiens]                                     93   2e-19
gi|209915556 cyclin D3 isoform 4 [Homo sapiens]                        89   4e-18
gi|17318565 cyclin E2 [Homo sapiens]                                   89   6e-18
gi|161377472 cyclin A1 isoform c [Homo sapiens]                        88   8e-18
gi|161377470 cyclin A1 isoform c [Homo sapiens]                        88   8e-18
gi|161377468 cyclin A1 isoform b [Homo sapiens]                        88   8e-18
gi|4502611 cyclin A1 isoform a [Homo sapiens]                          88   8e-18
gi|17318559 cyclin E1 isoform 1 [Homo sapiens]                         80   2e-15
gi|17318561 cyclin E1 isoform 2 [Homo sapiens]                         80   2e-15
gi|14327896 cyclin B1 [Homo sapiens]                                   70   2e-12
gi|4757930 cyclin B2 [Homo sapiens]                                    68   1e-11
gi|153791755 cyclin domain containing [Homo sapiens]                   62   8e-10
gi|118572588 cyclin F [Homo sapiens]                                   62   8e-10
gi|5802992 cyclin I [Homo sapiens]                                     60   3e-09
gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Ho...    56   3e-08
gi|40805832 cyclin G1 [Homo sapiens]                                   54   1e-07
gi|4757934 cyclin G1 [Homo sapiens]                                    54   1e-07
gi|90669307 cyclin B3 isoform 3 [Homo sapiens]                         54   2e-07
gi|197276674 cyclin J isoform 1 [Homo sapiens]                         54   2e-07
gi|89886237 cyclin I family, member 2 [Homo sapiens]                   50   2e-06
gi|4757936 cyclin G2 [Homo sapiens]                                    47   2e-05
gi|4502623 cyclin H [Homo sapiens]                                     44   2e-04
gi|94680985 cyclin J-like [Homo sapiens]                               44   2e-04
gi|16306525 cyclin B3 isoform 1 [Homo sapiens]                         44   2e-04
gi|197276676 cyclin J isoform 3 [Homo sapiens]                         41   0.001

>gi|4502617 cyclin D2 [Homo sapiens]
          Length = 289

 Score =  582 bits (1501), Expect = e-166
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60
           MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1   MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60

Query: 61  TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA 120
           TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA
Sbjct: 61  TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA 120

Query: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH 180
           EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH
Sbjct: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH 180

Query: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDV 240
           AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDV
Sbjct: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDV 240

Query: 241 DCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL 289
           DCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL
Sbjct: 241 DCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL 289


>gi|16950655 cyclin D1 [Homo sapiens]
          Length = 295

 Score =  358 bits (920), Expect = 2e-99
 Identities = 181/293 (61%), Positives = 224/293 (76%), Gaps = 6/293 (2%)

Query: 2   ELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVAT 61
           +LLC EV+ +RRA  D NLL +DRVL+ +L  EE   P  SYFKCVQK++ P MR++VAT
Sbjct: 4   QLLCCEVETIRRAYPDANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVAT 62

Query: 62  WMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAE 121
           WMLEVCEEQKCEEEVFPLAMNYLDRFL+  P  KS LQLLGA CMF+ASK+KET PLTAE
Sbjct: 63  WMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAE 122

Query: 122 KLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHA 181
           KLCIYTDNSI+P+ELL+ EL+++ KLKWNLAA+TPHDFIEH L K+P+  E   +IRKHA
Sbjct: 123 KLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHA 182

Query: 182 QTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVD 241
           QTF+ALCATD KF   PPSM+A GSV AA+ GL      + L+   LT  L+++   D D
Sbjct: 183 QTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPD 242

Query: 242 CLKACQEQIEAVLLNSLQQYRQDQ-----RDGSKSEDELDQASTPTDVRDIDL 289
           CL+ACQEQIEA+L +SL+Q +Q+       +  + E+E+D A TPTDVRD+D+
Sbjct: 243 CLRACQEQIEALLESSLRQAQQNMDPKAAEEEEEEEEEVDLACTPTDVRDVDI 295


>gi|4502619 cyclin D3 isoform 2 [Homo sapiens]
          Length = 292

 Score =  351 bits (901), Expect = 4e-97
 Identities = 183/297 (61%), Positives = 227/297 (76%), Gaps = 13/297 (4%)

Query: 1   MELLCHE-VDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 59
           MELLC E      RA  D  LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1   MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60

Query: 60  ATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLT 119
           A WMLEVCEEQ+CEEEVFPLAMNYLDR+L+ VPT K+ LQLLGAVCM LASKL+ET+PLT
Sbjct: 61  AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 120

Query: 120 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRK 179
            EKLCIYTD+++ P++L +WE++VLGKLKW+LAAV  HDF+  IL +L   R++ +L++K
Sbjct: 121 IEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK 180

Query: 180 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTD 239
           HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL       S++ D LTELLA IT T+
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTE 236

Query: 240 VDCLKACQEQIEAVLLNSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289
           VDCL+ACQEQIEA L  SL++  Q           GS S+    Q STPTDV  I L
Sbjct: 237 VDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 292


>gi|209862835 cyclin D3 isoform 1 [Homo sapiens]
          Length = 211

 Score =  248 bits (633), Expect = 4e-66
 Identities = 130/216 (60%), Positives = 162/216 (75%), Gaps = 12/216 (5%)

Query: 81  MNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWE 140
           MNYLDR+L+ VPT K+ LQLLGAVCM LASKL+ET+PLT EKLCIYTD+++ P++L +WE
Sbjct: 1   MNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 60

Query: 141 LVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPS 200
           ++VLGKLKW+LAAV  HDF+  IL +L   R++ +L++KHAQTF+ALCATD+ FAMYPPS
Sbjct: 61  VLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPS 120

Query: 201 MIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLLNSLQQ 260
           MIATGS+GAA+ GL       S++ D LTELLA IT T+VDCL+ACQEQIEA L  SL++
Sbjct: 121 MIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 176

Query: 261 YRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289
             Q           GS S+    Q STPTDV  I L
Sbjct: 177 ASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 211


>gi|209915553 cyclin D3 isoform 3 [Homo sapiens]
          Length = 220

 Score =  166 bits (420), Expect = 2e-41
 Identities = 91/161 (56%), Positives = 113/161 (70%), Gaps = 12/161 (7%)

Query: 136 LLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFA 195
           L +WE++VLGKLKW+LAAV  HDF+  IL +L   R++ +L++KHAQTF+ALCATD+ FA
Sbjct: 65  LEDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFA 124

Query: 196 MYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLL 255
           MYPPSMIATGS+GAA+ GL       S++ D LTELLA IT T+VDCL+ACQEQIEA L 
Sbjct: 125 MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 180

Query: 256 NSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289
            SL++  Q           GS S+    Q STPTDV  I L
Sbjct: 181 ESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 220



 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1  MELLCHE-VDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 59
          MELLC E      RA  D  LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1  MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60

Query: 60 ATWMLE 65
          A WMLE
Sbjct: 61 AYWMLE 66


>gi|4502613 cyclin A [Homo sapiens]
          Length = 432

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 30  LLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLA 89
           L  +E +  P+  Y K  Q DI   MR ++  W++EV EE K + E   LA+NY+DRFL+
Sbjct: 186 LREMEVKCKPKVGYMK-KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLS 244

Query: 90  GVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKW 149
            +   +  LQL+G   M LASK +E  P    +    TD++   +++L  E +VL  L +
Sbjct: 245 SMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTF 304

Query: 150 NLAAVTPHDFI-EHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVG 208
           +LAA T + F+ ++ L + P   +  SL     +  ++L   D  +  Y PS+IA  +  
Sbjct: 305 DLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGE--LSLIDAD-PYLKYLPSVIAGAAFH 361

Query: 209 AAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRDG 268
            A+          ++T  +  E L + T   ++ LK C   +    L + Q  +Q  R+ 
Sbjct: 362 LAL---------YTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREK 412

Query: 269 SKS 271
            K+
Sbjct: 413 YKN 415


>gi|209915556 cyclin D3 isoform 4 [Homo sapiens]
          Length = 96

 Score = 89.0 bits (219), Expect = 4e-18
 Identities = 55/101 (54%), Positives = 64/101 (63%), Gaps = 12/101 (11%)

Query: 196 MYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLL 255
           MYPPSMIATGS+GAA+ GL       S++ D LTELLA IT T+VDCL+ACQEQIEA L 
Sbjct: 1   MYPPSMIATGSIGAAVQGLG----ACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 56

Query: 256 NSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289
            SL++  Q           GS S+    Q STPTDV  I L
Sbjct: 57  ESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 96


>gi|17318565 cyclin E2 [Homo sapiens]
          Length = 404

 Score = 88.6 bits (218), Expect = 6e-18
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 29  NLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRF- 87
           N+L  E RY+    +F+ +  D++P MR ++  W+LEVCE      E F LA ++ DRF 
Sbjct: 116 NMLKKESRYVHD-KHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFM 174

Query: 88  LAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKL 147
           L      K+ LQL+G   +F+ASKL+E      ++    TD +   +++L  EL++L  L
Sbjct: 175 LTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEEDILRMELIILKAL 234

Query: 148 KWNLAAVTPHDFIEHILR-KLPQQREKLSLIRKHAQTFIAL 187
           KW L  VT   ++   L+    +   K+ L +   +TFI +
Sbjct: 235 KWELCPVTIISWLNLFLQVDALKDAPKVLLPQYSQETFIQI 275


>gi|161377472 cyclin A1 isoform c [Homo sapiens]
          Length = 421

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + + Q L   E R+ P+  Y K  Q DI   MR ++  W++EV EE K   E   LA+N+
Sbjct: 169 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 227

Query: 84  LDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVV 143
           LDRFL+ +   +  LQL+G   M LASK +E  P   ++    TD++   ++LL+ E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 287

Query: 144 LGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 203
           L  L ++L   T + F+   LR+        +L +  A+  ++L   D  F  Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344

Query: 204 TGSVGAAIC 212
                AA C
Sbjct: 345 ----AAAFC 349


>gi|161377470 cyclin A1 isoform c [Homo sapiens]
          Length = 421

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + + Q L   E R+ P+  Y K  Q DI   MR ++  W++EV EE K   E   LA+N+
Sbjct: 169 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 227

Query: 84  LDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVV 143
           LDRFL+ +   +  LQL+G   M LASK +E  P   ++    TD++   ++LL+ E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 287

Query: 144 LGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 203
           L  L ++L   T + F+   LR+        +L +  A+  ++L   D  F  Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344

Query: 204 TGSVGAAIC 212
                AA C
Sbjct: 345 ----AAAFC 349


>gi|161377468 cyclin A1 isoform b [Homo sapiens]
          Length = 464

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + + Q L   E R+ P+  Y K  Q DI   MR ++  W++EV EE K   E   LA+N+
Sbjct: 212 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 270

Query: 84  LDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVV 143
           LDRFL+ +   +  LQL+G   M LASK +E  P   ++    TD++   ++LL+ E ++
Sbjct: 271 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 330

Query: 144 LGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 203
           L  L ++L   T + F+   LR+        +L +  A+  ++L   D  F  Y PS+IA
Sbjct: 331 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 387

Query: 204 TGSVGAAIC 212
                AA C
Sbjct: 388 ----AAAFC 392


>gi|4502611 cyclin A1 isoform a [Homo sapiens]
          Length = 465

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + + Q L   E R+ P+  Y K  Q DI   MR ++  W++EV EE K   E   LA+N+
Sbjct: 213 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 271

Query: 84  LDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVV 143
           LDRFL+ +   +  LQL+G   M LASK +E  P   ++    TD++   ++LL+ E ++
Sbjct: 272 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 331

Query: 144 LGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 203
           L  L ++L   T + F+   LR+        +L +  A+  ++L   D  F  Y PS+IA
Sbjct: 332 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 388

Query: 204 TGSVGAAIC 212
                AA C
Sbjct: 389 ----AAAFC 393


>gi|17318559 cyclin E1 isoform 1 [Homo sapiens]
          Length = 410

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 21/198 (10%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + V + +L  E+ YL    +F      +QP MR ++  W++EVCE  K   E F LA ++
Sbjct: 114 EEVWKIMLNKEKTYLRD-QHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDF 172

Query: 84  LDRFLAGVPTP-KSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELV 142
            DR++A      K+ LQL+G   +F+A+KL+E  P    +    TD +    E+L  EL+
Sbjct: 173 FDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELM 232

Query: 143 VLGKLKWNLAAVT-------------PHDFIEHILRKLPQQREKLSLIRKHAQTFIALCA 189
           ++  LKW L+ +T              +D  E +L + PQQ      I       + LC 
Sbjct: 233 IMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQ------IFIQIAELLDLCV 286

Query: 190 TDFKFAMYPPSMIATGSV 207
            D     +P  ++A  ++
Sbjct: 287 LDVDCLEFPYGILAASAL 304


>gi|17318561 cyclin E1 isoform 2 [Homo sapiens]
          Length = 395

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 21/198 (10%)

Query: 24  DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNY 83
           + V + +L  E+ YL    +F      +QP MR ++  W++EVCE  K   E F LA ++
Sbjct: 99  EEVWKIMLNKEKTYLRD-QHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDF 157

Query: 84  LDRFLAGVPTP-KSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELV 142
            DR++A      K+ LQL+G   +F+A+KL+E  P    +    TD +    E+L  EL+
Sbjct: 158 FDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELM 217

Query: 143 VLGKLKWNLAAVT-------------PHDFIEHILRKLPQQREKLSLIRKHAQTFIALCA 189
           ++  LKW L+ +T              +D  E +L + PQQ      I       + LC 
Sbjct: 218 IMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQ------IFIQIAELLDLCV 271

Query: 190 TDFKFAMYPPSMIATGSV 207
            D     +P  ++A  ++
Sbjct: 272 LDVDCLEFPYGILAASAL 289


>gi|14327896 cyclin B1 [Homo sapiens]
          Length = 433

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 4/175 (2%)

Query: 49  KDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFL 108
           +++   MR ++  W+++V  + +  +E   + ++ +DRF+     PK  LQL+G   MF+
Sbjct: 195 REVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFI 254

Query: 109 ASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLP 168
           ASK +E  P         TDN+    ++ + E+ +L  L + L    P  F+    +   
Sbjct: 255 ASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE 314

Query: 169 QQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSL 223
              E+ +L    A+  + L   D+    +PPS IA G+   A+  L   E   +L
Sbjct: 315 VDVEQHTL----AKYLMELTMLDYDMVHFPPSQIAAGAFCLALKILDNGEWTPTL 365


>gi|4757930 cyclin B2 [Homo sapiens]
          Length = 398

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 49  KDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFL 108
           +DI   MR ++  W+++V  + +  +E   + +  +DRFL   P  +  LQL+G   + L
Sbjct: 159 RDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQPVSRKKLQLVGITALLL 218

Query: 109 ASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLP 168
           ASK +E      E     TDN+    ++ E E ++L +LK+ L    P  F+    +   
Sbjct: 219 ASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELGRPLPLHFLRRASKAGE 278

Query: 169 QQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGS 206
              E+ +L    A+  + L   D+    Y PS +A  +
Sbjct: 279 VDVEQHTL----AKYLMELTLIDYDMVHYHPSKVAAAA 312


>gi|153791755 cyclin domain containing [Homo sapiens]
          Length = 350

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 48  QKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMF 107
           Q  +    R  + +W++ V  +     E   L +N LDRFL   P      QLLG   + 
Sbjct: 125 QPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLTTTPVAADCFQLLGVTSLL 184

Query: 108 LASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHI--LR 165
           +A K  E  P   ++L      +   Q+L   E +VL KL + L A T   F+EH    R
Sbjct: 185 IACKQVEVHPPRVKQLLALCCGAFSRQQLCNLECIVLHKLHFTLGAPTISFFLEHFTHAR 244

Query: 166 KLPQQREKLSLIRKH--AQTFIALCATDFKFAMYPPSMIA 203
               Q E    +     A+    L   D+ F  Y PS++A
Sbjct: 245 VEAGQAEASEALEAQALARGVAELSLADYAFTSYSPSLLA 284


>gi|118572588 cyclin F [Homo sapiens]
          Length = 786

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 11/235 (4%)

Query: 47  VQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCM 106
           VQK +   MR ++  W++EV   +        L +  +DR+L     P+  LQLLG  CM
Sbjct: 301 VQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACM 360

Query: 107 FLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRK 166
            + ++      LT  +    TDN+ K ++L+     ++  L+  +   T  D+ E +L  
Sbjct: 361 VICTRFISKEILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTL 420

Query: 167 LPQQREKLSLIRKHAQTFIA-LCATDFKFAMYPPSMIATGSVGAAICGLQQDE----EVS 221
           +P     + L  +H  +F+  L       + Y P+ +A  ++  A     Q +    ++ 
Sbjct: 421 VP-----VELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLW 475

Query: 222 SLTCDALTELLAKITNTDVDCL-KACQEQIEAVLLNSLQQYRQDQRDGSKSEDEL 275
            LT  +  +L+  + +    C      +    V L +++Q  +D+R G  S++E+
Sbjct: 476 DLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKRYGEISQEEV 530


>gi|5802992 cyclin I [Homo sapiens]
          Length = 377

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 49  KDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFL 108
           +++ P  R  V  W+ ++  +     E F LA + LDRFLA V     +L  +   C FL
Sbjct: 38  QNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFL 97

Query: 109 ASKLKETSPLTAEKLCIYTDN--SIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRK 166
           A+K  E          +  D+       E+L  E ++L KL W+L   TP DF+ HI   
Sbjct: 98  AAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFL-HIFHA 156

Query: 167 L 167
           +
Sbjct: 157 I 157


>gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 307

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 32/107 (29%), Positives = 55/107 (51%)

Query: 45  KCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAV 104
           + + + + P MR +V  W+++V E      +   LA++ LD +L+        LQLLG  
Sbjct: 97  RALPRAVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLSAGRVRLHRLQLLGVA 156

Query: 105 CMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNL 151
           C+F+A K++E        LC+ + +S    ELL  E  +L +L + L
Sbjct: 157 CLFVACKMEECVLPEPAFLCLLSADSFSRAELLRAERRILSRLDFRL 203


>gi|40805832 cyclin G1 [Homo sapiens]
          Length = 295

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 73  EEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETS---PLTAEKLCIYTDN 129
           + E F LA+N LDRFL+ +     HL  +G  C +LA K  E     PL  + + I +  
Sbjct: 69  DTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRI-SQY 127

Query: 130 SIKPQELLEWELVVLGKLKWNLAAVTPHDFIE----HILRKLP-QQREKLSLIRKHAQTF 184
                +L+  E +VL K+ W + A T   F++     +   LP ++R  ++  R  AQ  
Sbjct: 128 RFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFERLEAQ-- 185

Query: 185 IALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTC 225
           +  C     F+   PS++A   +   I   +  E    + C
Sbjct: 186 LKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIEC 226


>gi|4757934 cyclin G1 [Homo sapiens]
          Length = 295

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 73  EEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETS---PLTAEKLCIYTDN 129
           + E F LA+N LDRFL+ +     HL  +G  C +LA K  E     PL  + + I +  
Sbjct: 69  DTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRI-SQY 127

Query: 130 SIKPQELLEWELVVLGKLKWNLAAVTPHDFIE----HILRKLP-QQREKLSLIRKHAQTF 184
                +L+  E +VL K+ W + A T   F++     +   LP ++R  ++  R  AQ  
Sbjct: 128 RFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFERLEAQ-- 185

Query: 185 IALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTC 225
           +  C     F+   PS++A   +   I   +  E    + C
Sbjct: 186 LKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIEC 226


>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
          Length = 1395

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 34/131 (25%), Positives = 61/131 (46%)

Query: 48   QKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMF 107
            Q +I   MR ++  W++EV    +   E   LA+  +D +L      K  LQLLGA    
Sbjct: 1153 QIEITSDMRAILVDWLVEVQVSFEMTHETLYLAVKLVDLYLMKAVCKKDKLQLLGATAFM 1212

Query: 108  LASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKL 167
            +A+K +E +    +      D++ +  E+L  E+ +L  LK ++     + F+    R +
Sbjct: 1213 IAAKFEEHNSPRVDDFVYICDDNYQRSEVLSMEINILNVLKCDINIPIAYHFLRRYARCI 1272

Query: 168  PQQREKLSLIR 178
                + L+L R
Sbjct: 1273 HTNMKTLTLSR 1283


>gi|197276674 cyclin J isoform 1 [Homo sapiens]
          Length = 383

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 79  LAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKL--KETSPLTAEKL----CIYTDNSI- 131
           LA+  LD F+         L L+   C+ LASK   KE S    E+L    C+   N + 
Sbjct: 63  LAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVL 122

Query: 132 KPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQR-----------EKLSL-IRK 179
             Q LL  EL++L   +WNL   T   FIE+ L +   +            EK  L + K
Sbjct: 123 TKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMICLEKTKLYMAK 182

Query: 180 HAQTFIALCATDFKFAMYPPSMIATGSVGAA 210
           +A  F+ +   D+ F  Y PS++A   V ++
Sbjct: 183 YADYFLEVSLQDYAFLNYAPSLVAAACVASS 213


>gi|89886237 cyclin I family, member 2 [Homo sapiens]
          Length = 369

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 59  VATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPL 118
           V  W+L +       +  F LA+    R L  V   + +L       + LA+K+ E    
Sbjct: 153 VVLWLLRLQNTFYFSQSTFNLALTIFGRLLISVKVKEKYLHCATITSLRLAAKVNEEEEF 212

Query: 119 TAE--KLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFI-----------EHILR 165
             +      +  +   P ELL  EL +L +L W+L   TP DF+            H+L 
Sbjct: 213 IPQVKDFTKHYGSDYSPNELLRMELAILDRLHWDLYIGTPLDFLTIFHALVVLSWPHVLE 272

Query: 166 KLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTC 225
            LPQ+   L +     Q  +  C    +   +       GS  A +    + E +    C
Sbjct: 273 LLPQRNPSLHVASLTRQ--LQHCMAGHQLLQF------KGSTLALVIITLELERLMPGWC 324

Query: 226 DALTELLAKITNTDVDCLKACQEQIEAVLLNSLQ 259
             +++LL K    D+    +C +++    L SLQ
Sbjct: 325 APISDLLKKAQVGDMQ--YSCCKELVMQQLRSLQ 356


>gi|4757936 cyclin G2 [Homo sapiens]
          Length = 344

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 75  EVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETS---PLTAEKLCIYTDNSI 131
           E F LA+N LDRFLA +     HL  +G     LA+++ E     P T + + I +    
Sbjct: 75  ETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIPSTHDVIRI-SQCKC 133

Query: 132 KPQELLEWELVVLGKLKWNLAAVTPHDFIE----HILRKLPQQREKLSLIRKHAQTFIAL 187
              ++   E ++  KL + L A T  +F+      IL    +++E LSL +  AQ  +  
Sbjct: 134 TASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEILSLDKLEAQ--LKA 191

Query: 188 CATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELL------AKITNTD 239
           C     F+   PS++       A+C L  + EV +L    L E+L      +KI +T+
Sbjct: 192 CNCRLIFSKAKPSVL-------ALCLL--NLEVETLKSVELLEILLLVKKHSKINDTE 240


>gi|4502623 cyclin H [Homo sapiens]
          Length = 323

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 29/179 (16%)

Query: 63  MLEVCEEQK--CEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKE------ 114
           +LE C   K      V   A  Y  RF       + H +++   C FLA K+ E      
Sbjct: 64  LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP 123

Query: 115 -------TSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKL 167
                   SPL  EK           +++LE+EL+++ +L ++L    P+   E  L  L
Sbjct: 124 QFVGNLRESPLGQEKAL---------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 174

Query: 168 PQQR---EKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSV--GAAICGLQQDEEVS 221
             +    E   ++RK A  F+   A    + +Y PS IA  ++   A+  G+  +  +S
Sbjct: 175 KTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLS 233


>gi|94680985 cyclin J-like [Homo sapiens]
          Length = 435

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 130 SIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQ-------------REKLSL 176
           ++  +ELL  EL++L    WNL   TP  F+++ L     Q             R+    
Sbjct: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228

Query: 177 IRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKIT 236
           ++++A  F+ +   D  F  + PS++A   VGA+   LQ             T  L +I+
Sbjct: 229 LKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQ--------LSPYWTRDLQRIS 280

Query: 237 NTDVDCLKACQEQIEAVLLNSLQ 259
           +  ++ L  C E +  V  N L+
Sbjct: 281 SYSLEHLSTCIEILLVVYDNVLK 303


>gi|16306525 cyclin B3 isoform 1 [Homo sapiens]
          Length = 291

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 27/104 (25%), Positives = 48/104 (46%)

Query: 75  EVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQ 134
           E   LA+  +D +L      K  LQLLGA    +A+K +E +    +      D++ +  
Sbjct: 76  ETLYLAVKLVDLYLMKAVCKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYICDDNYQRS 135

Query: 135 ELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIR 178
           E+L  E+ +L  LK ++     + F+    R +    + L+L R
Sbjct: 136 EVLSMEINILNVLKCDINIPIAYHFLRRYARCIHTNMKTLTLSR 179


>gi|197276676 cyclin J isoform 3 [Homo sapiens]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 79  LAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKL--KETSPLTAEKL----CIYTDNSI- 131
           LA+  LD F+         L L+   C+ LASK   KE S    E+L    C+   N + 
Sbjct: 63  LAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVL 122

Query: 132 KPQELLEWELVVLGKLKWNLAAVTPHDFIEHIL 164
             Q LL  EL++L   +WNL   T   FIE+ L
Sbjct: 123 TKQNLLHMELLLLETFQWNLCLPTAAHFIEYYL 155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,143,764
Number of Sequences: 37866
Number of extensions: 473495
Number of successful extensions: 1137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 42
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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