Guide to the Human Genome
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Name: ALOX5 Sequence: fasta or formatted (674aa) NCBI GI: 4502057
Description:

arachidonate 5-lipoxygenase

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         43           2
 C cysteine            1.9         13           1
 D aspartate           6.5         44           2
 E glutamate           7.1         48           2
 F phenylalanine       5.2         35           1
 G glycine             4.9         33           4
 H histidine           2.5         17           1
 I isoleucine          6.5         44           1
 K lysine              5.6         38           3
 L leucine             8.8         59           2
 M methionine          2.4         16           1
 N asparagine          3.9         26           1
 P proline             5.0         34           3
 Q glutamine           4.6         31           2
 R arginine            5.3         36           2
 S serine              4.9         33           2
 T threonine           4.5         30           2
 V valine              7.3         49           2
 W tryptophan          2.2         15           1
 Y tyrosine            4.5         30           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arachidonate 5-lipoxygenase 
ALOX15B               0.389   arachidonate 15-lipoxygenase, second type isoform d ...
ALOX12B               0.374   arachidonate 12-lipoxygenase, 12R type 
ALOX12                0.364   arachidonate 12-lipoxygenase 
ALOXE3                0.361   arachidonate lipoxygenase 3 
ALOX15B               0.359   arachidonate 15-lipoxygenase, second type isoform a ...
ALOX15                0.347   arachidonate 15-lipoxygenase 
ALOX15B               0.318   arachidonate 15-lipoxygenase, second type isoform b ...
PKDREJ                0.029   receptor for egg jelly-like protein precursor 
LOXHD1                0.025   lipoxygenase homology domains 1 isoform 1 
LOXHD1                0.019   lipoxygenase homology domains 1 isoform 3 
LOC100293597          0.017   PREDICTED: similar to hCG2036697 
LOC100291435          0.017   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.017   PREDICTED: hypothetical protein XP_002342894 
LOXHD1                0.016   lipoxygenase homology domains 1 isoform 2 
PKD1L3                0.015   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.015   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.015   PREDICTED: polycystin 1-like 3 
PKD1L3                0.015   polycystin 1-like 3 
PKD1L2                0.015   polycystin 1-like 2 isoform a 
PKD1L1                0.012   polycystin-1L1 
EML1                  0.006   echinoderm microtubule associated protein like 1 iso...
EML1                  0.006   echinoderm microtubule associated protein like 1 iso...
PKD1                  0.006   polycystin 1 isoform 2 precursor 
PKD1                  0.006   polycystin 1 isoform 1 precursor 
FAM92B                0.005   hypothetical protein LOC339145 
LINGO2                0.004   leucine rich repeat and Ig domain containing 2 [Homo...
FCHO1                 0.004   FCH domain only 1 isoform c 
FCHO1                 0.004   FCH domain only 1 isoform b 
FCHO1                 0.004   FCH domain only 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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