Guide to the Human Genome
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Name: LOC100293597 Sequence: fasta or formatted (1029aa) NCBI GI: 239754889
Description:

PREDICTED: similar to hCG2036697

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         55           2
 C cysteine            2.7         28           2
 D aspartate           5.3         55           2
 E glutamate           6.9         71           3
 F phenylalanine       4.8         49           2
 G glycine             8.0         82           2
 H histidine           2.6         27           1
 I isoleucine          4.8         49           2
 K lysine              7.4         76           2
 L leucine             8.6         88           2
 M methionine          1.7         17           1
 N asparagine          3.6         37           1
 P proline             3.5         36           2
 Q glutamine           4.9         50           1
 R arginine            4.5         46           2
 S serine              7.7         79           2
 T threonine           6.2         64           2
 V valine              7.3         75           2
 W tryptophan          1.6         16           1
 Y tyrosine            2.8         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036697 
LOC100291435          0.999   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.998   PREDICTED: hypothetical protein XP_002342894 
LOXHD1                0.049   lipoxygenase homology domains 1 isoform 1 
LOXHD1                0.040   lipoxygenase homology domains 1 isoform 2 
LOXHD1                0.034   lipoxygenase homology domains 1 isoform 3 
DENND5B               0.018   DENN/MADD domain containing 5B 
PKD1L1                0.018   polycystin-1L1 
PKD1L3                0.016   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.016   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.016   PREDICTED: polycystin 1-like 3 
PKD1L3                0.016   polycystin 1-like 3 
DENND5A               0.016   RAB6 interacting protein 1 
PKDREJ                0.015   receptor for egg jelly-like protein precursor 
PKD1L2                0.014   polycystin 1-like 2 isoform a 
PKD1                  0.014   polycystin 1 isoform 2 precursor 
PKD1                  0.014   polycystin 1 isoform 1 precursor 
ALOX5                 0.011   arachidonate 5-lipoxygenase 
ALOX12                0.011   arachidonate 12-lipoxygenase 
ALOX15                0.007   arachidonate 15-lipoxygenase 
ALOXE3                0.006   arachidonate lipoxygenase 3 
FGF4                  0.005   fibroblast growth factor 4 precursor 
DUS2L                 0.005   dihydrouridine synthase 2-like, SMM1 homolog 
FGF2                  0.004   fibroblast growth factor 2 
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.004   protein tyrosine phosphatase, non-receptor type 3 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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