Guide to the Human Genome
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Name: ALOX12B Sequence: fasta or formatted (701aa) NCBI GI: 4502053
Description:

arachidonate 12-lipoxygenase, 12R type

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         44           2
 C cysteine            2.3         16           1
 D aspartate           4.7         33           2
 E glutamate           6.0         42           2
 F phenylalanine       4.7         33           2
 G glycine             6.1         43           2
 H histidine           3.1         22           2
 I isoleucine          6.1         43           3
 K lysine              4.3         30           2
 L leucine            11.0         77           2
 M methionine          2.0         14           2
 N asparagine          3.3         23           1
 P proline             7.1         50           2
 Q glutamine           3.1         22           1
 R arginine            6.6         46           2
 S serine              4.9         34           2
 T threonine           5.8         41           2
 V valine              5.6         39           2
 W tryptophan          1.9         13           1
 Y tyrosine            5.1         36           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arachidonate 12-lipoxygenase, 12R type 
ALOXE3                0.546   arachidonate lipoxygenase 3 
ALOX15B               0.466   arachidonate 15-lipoxygenase, second type isoform d ...
ALOX15B               0.436   arachidonate 15-lipoxygenase, second type isoform a ...
ALOX15B               0.385   arachidonate 15-lipoxygenase, second type isoform b ...
ALOX5                 0.356   arachidonate 5-lipoxygenase 
ALOX12                0.306   arachidonate 12-lipoxygenase 
ALOX15                0.277   arachidonate 15-lipoxygenase 
LOXHD1                0.013   lipoxygenase homology domains 1 isoform 2 
LOXHD1                0.013   lipoxygenase homology domains 1 isoform 1 
PKDREJ                0.006   receptor for egg jelly-like protein precursor 
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 3 
SEC14L5               0.003   SEC14-like 5 
NCF1                  0.003   neutrophil cytosolic factor 1 
URB2                  0.003   URB2 ribosome biogenesis 2 homolog 
C2orf29               0.003   hypothetical protein LOC55571 
LPL                   0.003   lipoprotein lipase precursor 
LOC100293597          0.003   PREDICTED: similar to hCG2036697 
LOC100291435          0.003   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.003   PREDICTED: hypothetical protein XP_002342894 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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