Guide to the Human Genome
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Name: ALOXE3 Sequence: fasta or formatted (711aa) NCBI GI: 182765464
Description:

arachidonate lipoxygenase 3

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         46           2
 C cysteine            3.4         24           1
 D aspartate           4.8         34           2
 E glutamate           4.9         35           2
 F phenylalanine       4.2         30           2
 G glycine             5.6         40           1
 H histidine           2.5         18           1
 I isoleucine          4.5         32           2
 K lysine              3.5         25           2
 L leucine            12.0         85           4
 M methionine          2.3         16           1
 N asparagine          3.7         26           2
 P proline             6.8         48           3
 Q glutamine           4.8         34           2
 R arginine            5.6         40           2
 S serine              6.6         47           2
 T threonine           7.2         51           3
 V valine              4.9         35           1
 W tryptophan          2.1         15           1
 Y tyrosine            4.2         30           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arachidonate lipoxygenase 3 
ALOX12B               0.537   arachidonate 12-lipoxygenase, 12R type 
ALOX15B               0.480   arachidonate 15-lipoxygenase, second type isoform d ...
ALOX15B               0.445   arachidonate 15-lipoxygenase, second type isoform a ...
ALOX15B               0.385   arachidonate 15-lipoxygenase, second type isoform b ...
ALOX5                 0.336   arachidonate 5-lipoxygenase 
ALOX12                0.300   arachidonate 12-lipoxygenase 
ALOX15                0.281   arachidonate 15-lipoxygenase 
LOXHD1                0.014   lipoxygenase homology domains 1 isoform 1 
LOXHD1                0.014   lipoxygenase homology domains 1 isoform 3 
LOXHD1                0.008   lipoxygenase homology domains 1 isoform 2 
LOC100293597          0.008   PREDICTED: similar to hCG2036697 
LOC100291435          0.008   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.008   PREDICTED: hypothetical protein XP_002342894 
SNX8                  0.003   sorting nexin 8 
URB2                  0.003   URB2 ribosome biogenesis 2 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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