Guide to the Human Genome
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Name: ALOX15B Sequence: fasta or formatted (647aa) NCBI GI: 85067499
Description:

arachidonate 15-lipoxygenase, second type isoform a

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes

Other entries for this name:
alt prot [676aa] arachidonate 15-lipoxygenase, second type isoform d
alt prot [602aa] arachidonate 15-lipoxygenase, second type isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         48           2
 C cysteine            1.7         11           1
 D aspartate           4.2         27           2
 E glutamate           6.8         44           2
 F phenylalanine       4.9         32           2
 G glycine             7.0         45           2
 H histidine           2.6         17           2
 I isoleucine          4.5         29           2
 K lysine              3.6         23           1
 L leucine            12.1         78           3
 M methionine          1.7         11           1
 N asparagine          3.2         21           1
 P proline             7.9         51           3
 Q glutamine           5.4         35           3
 R arginine            4.9         32           2
 S serine              6.3         41           2
 T threonine           5.3         34           1
 V valine              5.4         35           1
 W tryptophan          2.5         16           1
 Y tyrosine            2.6         17           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arachidonate 15-lipoxygenase, second type isoform a ... 
ALOX15B               0.989   arachidonate 15-lipoxygenase, second type isoform d ...
ALOX15B               0.917   arachidonate 15-lipoxygenase, second type isoform b ...
ALOXE3                0.498   arachidonate lipoxygenase 3 
ALOX12B               0.478   arachidonate 12-lipoxygenase, 12R type 
ALOX5                 0.375   arachidonate 5-lipoxygenase 
ALOX12                0.303   arachidonate 12-lipoxygenase 
ALOX15                0.302   arachidonate 15-lipoxygenase 
LOXHD1                0.013   lipoxygenase homology domains 1 isoform 1 
MYO15A                0.006   myosin XV 
FCRLA                 0.006   Fc receptor-like and mucin-like 1 
LOC100293709          0.006   PREDICTED: hypothetical protein 
LOC100290329          0.006   PREDICTED: hypothetical protein XP_002347739 
LOC100289615          0.006   PREDICTED: hypothetical protein XP_002344167 
MEF2A                 0.005   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.005   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.005   myocyte enhancer factor 2A isoform 2 
LOXHD1                0.005   lipoxygenase homology domains 1 isoform 2 
LOC100292378          0.005   PREDICTED: hypothetical protein 
NPAT                  0.004   nuclear protein,  ataxia-telangiectasia locus [Homo...
PLCE1                 0.004   phospholipase C, epsilon 1 
KRT17                 0.004   keratin 17 
BCAS2                 0.004   breast carcinoma amplified sequence 2 
PKD1                  0.004   polycystin 1 isoform 2 precursor 
PKD1                  0.004   polycystin 1 isoform 1 precursor 
KLF4                  0.004   Kruppel-like factor 4 (gut) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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