Guide to the Human Genome
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Name: FCHO1 Sequence: fasta or formatted (889aa) NCBI GI: 239049457
Description:

FCH domain only 1 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {891aa} FCH domain only 1 isoform a
alt prot {839aa} FCH domain only 1 isoform c
alt mRNA {889aa} FCH domain only 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         83           4
 C cysteine            1.2         11           1
 D aspartate           4.0         36           2
 E glutamate           7.6         68           2
 F phenylalanine       3.8         34           1
 G glycine             6.5         58           2
 H histidine           2.2         20           1
 I isoleucine          1.5         13           1
 K lysine              4.2         37           2
 L leucine             9.4         84           2
 M methionine          1.8         16           1
 N asparagine          2.0         18           1
 P proline             9.6         85           4
 Q glutamine           3.9         35           1
 R arginine            7.0         62           2
 S serine             11.2        100           4
 T threonine           5.8         52           2
 V valine              5.6         50           2
 W tryptophan          1.0          9           1
 Y tyrosine            2.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FCH domain only 1 isoform b 
FCHO1                 1.000   FCH domain only 1 isoform b 
FCHO1                 0.991   FCH domain only 1 isoform a 
FCHO1                 0.941   FCH domain only 1 isoform c 
FCHO2                 0.404   FCH domain only 2 isoform a 
FCHO2                 0.374   FCH domain only 2 isoform b 
SGIP1                 0.163   SH3-domain GRB2-like (endophilin) interacting prote...
PSTPIP1               0.040   proline-serine-threonine phosphatase interacting pro...
PSTPIP2               0.037   proline-serine-threonine phosphatase interacting pr...
GAS7                  0.036   growth arrest-specific 7 isoform d 
GAS7                  0.036   growth arrest-specific 7 isoform c 
GAS7                  0.036   growth arrest-specific 7 isoform b 
GAS7                  0.036   growth arrest-specific 7 isoform a 
PACSIN3               0.018   protein kinase C and casein kinase substrate in neur...
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ37078              0.017   hypothetical protein LOC222183 
C2orf55               0.016   hypothetical protein LOC343990 
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
FMN1                  0.016   formin 1 
LOC100291479          0.015   PREDICTED: hypothetical protein XP_002348186 
SPTY2D1               0.015   SPT2, Suppressor of Ty, domain containing 1 
PCNXL3                0.014   pecanex-like 3 
WIPF2                 0.014   WIRE protein 
AUTS2                 0.014   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.014   autism susceptibility candidate 2 isoform 1 
NPIPL3                0.014   nuclear pore complex interacting protein-like 3 [Ho...
PCLO                  0.014   piccolo isoform 2 
PCLO                  0.014   piccolo isoform 1 
FMNL1                 0.014   formin-like 1 
FAM71E2               0.014   hypothetical protein LOC284418 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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