Guide to the Human Genome
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Name: PKD1 Sequence: fasta or formatted (4303aa) NCBI GI: 205360954
Description:

polycystin 1 isoform 1 precursor

Referenced in:

Kidney

Other entries for this name:
alt prot [4302aa] polycystin 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        451           3
 C cysteine            2.2         95           2
 D aspartate           3.6        153           2
 E glutamate           5.0        216           3
 F phenylalanine       3.4        146           2
 G glycine             8.3        355           3
 H histidine           2.5        106           1
 I isoleucine          2.0         85           2
 K lysine              1.2         52           1
 L leucine            11.9        510           3
 M methionine          0.9         39           2
 N asparagine          2.9        124           2
 P proline             7.0        301           5
 Q glutamine           3.9        168           2
 R arginine            6.4        277           2
 S serine              9.0        388           3
 T threonine           5.5        235           3
 V valine              9.5        410           3
 W tryptophan          2.1         89           1
 Y tyrosine            2.4        103           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polycystin 1 isoform 1 precursor 
PKD1                  0.999   polycystin 1 isoform 2 precursor 
PKD1L2                0.035   polycystin 1-like 2 isoform a 
PKD1L3                0.018   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.018   PREDICTED: polycystin 1-like 3 
PKD1L3                0.018   polycystin 1-like 3 
PKD1L3                0.018   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
LOC100288299          0.017   PREDICTED: hypothetical protein XP_002343464 
PKD2                  0.011   polycystin 2 
PKD1L1                0.011   polycystin-1L1 
PKD2L1                0.010   polycystic kidney disease 2-like 1 
PKDREJ                0.009   receptor for egg jelly-like protein precursor 
PKD2L2                0.007   polycystic kidney disease 2-like 2 
ISLR2                 0.006   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.006   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.006   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.006   immunoglobulin superfamily containing leucine-rich ...
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 1 
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 2 
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 3 
GPR125                0.006   G protein-coupled receptor 125 
CPN2                  0.006   carboxypeptidase N, polypeptide 2, 83kD 
SLIT1                 0.006   slit homolog 1 
GP5                   0.005   glycoprotein V (platelet) 
ISLR                  0.005   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.005   immunoglobulin superfamily containing leucine-rich re...
LRG1                  0.005   leucine-rich alpha-2-glycoprotein 1 
SLIT3                 0.005   slit homolog 3 
FLRT1                 0.005   fibronectin leucine rich transmembrane protein 1 [Ho...
SLIT2                 0.005   slit homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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