Guide to the Human Genome
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Name: C2orf3 Sequence: fasta or formatted (781aa) NCBI GI: 44890065
Description:

hypothetical protein LOC6936

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         39           2
 C cysteine            1.3         10           1
 D aspartate           6.4         50           2
 E glutamate          10.1         79           3
 F phenylalanine       3.5         27           1
 G glycine             3.5         27           3
 H histidine           2.3         18           2
 I isoleucine          6.3         49           2
 K lysine              7.9         62           2
 L leucine             9.6         75           3
 M methionine          1.7         13           1
 N asparagine          3.6         28           1
 P proline             4.2         33           2
 Q glutamine           5.8         45           3
 R arginine            6.4         50           2
 S serine             11.3         88           4
 T threonine           4.5         35           2
 V valine              4.2         33           2
 W tryptophan          1.3         10           1
 Y tyrosine            1.3         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC6936 
C21orf66              0.262   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.203   GC-rich sequence DNA-binding factor candidate isofor...
TPM1                  0.022   tropomyosin 1 alpha chain isoform 7 
TPM1                  0.018   tropomyosin 1 alpha chain isoform 2 
TPM1                  0.018   tropomyosin 1 alpha chain isoform 4 
CGN                   0.016   cingulin 
KIF21A                0.016   kinesin family member 21A 
CEP290                0.015   centrosomal protein 290kDa 
ANKRD26               0.015   ankyrin repeat domain 26 
AKAP9                 0.015   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.014   A-kinase anchor protein 9 isoform 2 
TPM1                  0.014   tropomyosin 1 alpha chain isoform 3 
ATRX                  0.013   transcriptional regulator ATRX isoform 2 
ATRX                  0.013   transcriptional regulator ATRX isoform 1 
CLSPN                 0.013   claspin 
HMMR                  0.013   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform b [Ho...
CEP164                0.013   centrosomal protein 164kDa 
BOD1L                 0.012   biorientation of chromosomes in cell division 1-like...
DMP1                  0.012   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
ERC1                  0.012   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.012   RAB6-interacting protein 2 isoform delta 
DMP1                  0.012   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
MICAL3                0.011   microtubule associated monoxygenase, calponin and L...
MAP7D2                0.011   MAP7 domain containing 2 
CENPF                 0.011   centromere protein F 
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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