Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 44662823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44662823 hemojuvelin isoform b [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44662823 hemojuvelin isoform b [Homo sapiens] 644 0.0
gi|47458048 hemojuvelin isoform a precursor [Homo sapiens] 644 0.0
gi|42544157 hemojuvelin isoform c [Homo sapiens] 399 e-111
gi|47458050 hemojuvelin isoform c [Homo sapiens] 399 e-111
gi|24308189 RGM domain family, member A [Homo sapiens] 284 6e-77
gi|224589135 RGM domain family, member B [Homo sapiens] 267 8e-72
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 41 0.001
gi|24308309 transmembrane protein 163 [Homo sapiens] 38 0.013
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 35 0.066
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 35 0.066
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 35 0.066
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 35 0.066
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 35 0.066
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 35 0.066
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 35 0.066
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 35 0.066
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 35 0.066
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 35 0.066
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 35 0.066
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 35 0.066
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 35 0.066
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 35 0.066
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 35 0.066
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 35 0.066
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 35 0.066
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 35 0.066
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 35 0.066
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 35 0.066
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 33 0.33
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 33 0.33
>gi|44662823 hemojuvelin isoform b [Homo sapiens]
Length = 313
Score = 644 bits (1662), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 60
MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP
Sbjct: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 60
Query: 61 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 120
HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ
Sbjct: 61 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 120
Query: 121 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 180
KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ
Sbjct: 121 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 180
Query: 181 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 240
LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV
Sbjct: 181 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 240
Query: 241 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 300
EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP
Sbjct: 241 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 300
Query: 301 LLSGLFVLWLCIQ 313
LLSGLFVLWLCIQ
Sbjct: 301 LLSGLFVLWLCIQ 313
>gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
Length = 426
Score = 644 bits (1662), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 60
MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP
Sbjct: 114 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 173
Query: 61 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 120
HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ
Sbjct: 174 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 233
Query: 121 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 180
KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ
Sbjct: 234 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 293
Query: 181 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 240
LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV
Sbjct: 294 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 353
Query: 241 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 300
EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP
Sbjct: 354 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 413
Query: 301 LLSGLFVLWLCIQ 313
LLSGLFVLWLCIQ
Sbjct: 414 LLSGLFVLWLCIQ 426
>gi|42544157 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 399 bits (1024), Expect = e-111
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 114 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 173
MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII
Sbjct: 1 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 60
Query: 174 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 233
IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL
Sbjct: 61 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 120
Query: 234 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 293
CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS
Sbjct: 121 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 180
Query: 294 SATLLAPLLSGLFVLWLCIQ 313
SATLLAPLLSGLFVLWLCIQ
Sbjct: 181 SATLLAPLLSGLFVLWLCIQ 200
>gi|47458050 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 399 bits (1024), Expect = e-111
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 114 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 173
MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII
Sbjct: 1 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 60
Query: 174 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 233
IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL
Sbjct: 61 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 120
Query: 234 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 293
CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS
Sbjct: 121 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 180
Query: 294 SATLLAPLLSGLFVLWLCIQ 313
SATLLAPLLSGLFVLWLCIQ
Sbjct: 181 SATLLAPLLSGLFVLWLCIQ 200
>gi|24308189 RGM domain family, member A [Homo sapiens]
Length = 450
Score = 284 bits (727), Expect = 6e-77
Identities = 159/340 (46%), Positives = 206/340 (60%), Gaps = 35/340 (10%)
Query: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLP---APDPCDYEGRFSRLHGRPPGFLHCASF 57
M QHNCS+ GPT+ P R LP AG +P+ C YE F + H P + HC F
Sbjct: 110 MSQHNCSKDGPTSQPRLR--TLPPAGDSQERSDSPEICHYEKSFHK-HSATPNYTHCGLF 166
Query: 58 GDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQEC 117
GDPH+R+F F TC+VQGAWPL+DN++L VQAT++P+ G+ ATAT KLTIIFKN QEC
Sbjct: 167 GDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQATNTPVLPGSAATATSKLTIIFKNFQEC 226
Query: 118 IDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQT 177
+DQKVYQAE+D LP AF DGS NGGD+ G +SL I G HVEIQA YIGTTI++RQ
Sbjct: 227 VDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQV 286
Query: 178 AGQLSFSIKVAEDVAMAFS--AEQDLQLCVGGCPPSQRL--SRSERNRRG---------- 223
L+F++++ E+V A Q L LC+ GCP +Q++ N G
Sbjct: 287 GRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAAS 346
Query: 224 -------AITIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLP 276
+TA CKE LPVED Y+ +CVFD+L +GD NFT+AA ALED +
Sbjct: 347 PAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHS 406
Query: 277 DLEKLHLFP--------SDAGVPLSSATLLAPLLSGLFVL 308
+ +KLHL+ + AG+PL+ LL L+ L +L
Sbjct: 407 NKDKLHLYERTRDLPGRAAAGLPLAPRPLLGALVPLLALL 446
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 267 bits (683), Expect = 8e-72
Identities = 147/334 (44%), Positives = 195/334 (58%), Gaps = 36/334 (10%)
Query: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRF-SRLHGR----PPGFLHCA 55
M Q NCS+ GPT+ P DPC+Y +R H R PP +L C
Sbjct: 157 MSQRNCSKDGPTSSTNPE-----------VTHDPCNYHSHAGAREHRRGDQNPPSYLFCG 205
Query: 56 SFGDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQ 115
FGDPH+R+F +F TC+V+GAWPL+DN++L VQ T+ P+ G++ATAT K+TIIFK
Sbjct: 206 LFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHH 265
Query: 116 ECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIR 175
EC DQKVYQA D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +R
Sbjct: 266 ECTDQKVYQAVTDDLPAAFVDGTTSGGD-SDAKSLRIVERESGHYVEMHARYIGTTVFVR 324
Query: 176 QTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI---------- 225
Q L+ +I++ ED+AM++ QDLQLCV GCP S+R+ + +
Sbjct: 325 QVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLV 384
Query: 226 ------TIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLE 279
T++TA C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E
Sbjct: 385 QAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKE 444
Query: 280 KLHLFPSDA-GVPLSSATLLAPLLSGLFVLWLCI 312
+ H+FPS G P + L L GL L L +
Sbjct: 445 RWHIFPSSGNGTPRGGSDLSVSL--GLTCLILIV 476
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 7 SRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRF---SRLHGRPPGFLHCASFGDPHVR 63
S G P P GP PG+G LPA P ++G +R+ R H H
Sbjct: 940 SSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHH 999
Query: 64 SFHHHFH 70
HHH H
Sbjct: 1000 PPHHHHH 1006
>gi|24308309 transmembrane protein 163 [Homo sapiens]
Length = 289
Score = 37.7 bits (86), Expect = 0.013
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 7 SRQGPTAPPPPRGPALPGAGSGLPAP 32
S QGPT PPPPRG A P A G PAP
Sbjct: 11 SSQGPTVPPPPRGHAPPAAAPG-PAP 35
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 212 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 258
Query: 62 VRSFH 66
++ +H
Sbjct: 259 IQGYH 263
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 201 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 247
Query: 62 VRSFH 66
++ +H
Sbjct: 248 IQGYH 252
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 203 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 249
Query: 62 VRSFH 66
++ +H
Sbjct: 250 IQGYH 254
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 206 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 252
Query: 62 VRSFH 66
++ +H
Sbjct: 253 IQGYH 257
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 241 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 287
Query: 62 VRSFH 66
++ +H
Sbjct: 288 IQGYH 292
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 210 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 256
Query: 62 VRSFH 66
++ +H
Sbjct: 257 IQGYH 261
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 244 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 290
Query: 62 VRSFH 66
++ +H
Sbjct: 291 IQGYH 295
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 222 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 268
Query: 62 VRSFH 66
++ +H
Sbjct: 269 IQGYH 273
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 234 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 280
Query: 62 VRSFH 66
++ +H
Sbjct: 281 IQGYH 285
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 241 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 287
Query: 62 VRSFH 66
++ +H
Sbjct: 288 IQGYH 292
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 244 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 290
Query: 62 VRSFH 66
++ +H
Sbjct: 291 IQGYH 295
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 246 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 292
Query: 62 VRSFH 66
++ +H
Sbjct: 293 IQGYH 297
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 251 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 297
Query: 62 VRSFH 66
++ +H
Sbjct: 298 IQGYH 302
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 35.4 bits (80), Expect = 0.066
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 3 QHNCSRQGPTAPPPPRGPALPGAGSGLPAP-DPCDYEGRFSRLHGRPPGFLHCASFGDPH 61
Q S QGP PP P GP+ P GLP P P G PPG GDP
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG--------PPG-----PKGDPG 309
Query: 62 VRSFH 66
++ +H
Sbjct: 310 IQGYH 314
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 33.1 bits (74), Expect = 0.33
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 5 NCSRQGPT-------APPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPG 50
N R GP APPPP P G G P P P GR L PPG
Sbjct: 335 NKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPG 387
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 10 GPTAPPPPRGPALPGAGSGLPAPDP 34
GP PPPP P P + PAP P
Sbjct: 390 GPPMPPPPPPPPPPPSSGNGPAPPP 414
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 33.1 bits (74), Expect = 0.33
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 5 NCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDY 37
N + +G AP PPRGP L G GS PD Y
Sbjct: 322 NNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKY 354
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,249,697
Number of Sequences: 37866
Number of extensions: 760820
Number of successful extensions: 5880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 5347
Number of HSP's gapped (non-prelim): 598
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.