Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 44662821
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44662821 LRRN4 C-terminal like [Homo sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44662821 LRRN4 C-terminal like [Homo sapiens] 505 e-143
gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens] 111 6e-25
gi|32528301 EPH receptor B4 precursor [Homo sapiens] 39 0.004
gi|27437045 colony stimulating factor 3 receptor isoform d precu... 39 0.005
gi|24496783 colony stimulating factor 3 receptor isoform c precu... 39 0.005
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 39 0.005
gi|4503081 colony stimulating factor 3 receptor isoform a precur... 39 0.005
gi|10140845 ephrin receptor EphA8 isoform 1 precursor [Homo sapi... 38 0.007
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 37 0.020
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 36 0.033
gi|83281200 protogenin [Homo sapiens] 35 0.075
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 33 0.22
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 33 0.22
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 33 0.22
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 33 0.22
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 33 0.22
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 33 0.22
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 33 0.22
gi|32261332 seizure related 6 homolog (mouse)-like precursor [Ho... 33 0.28
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 32 0.37
gi|217330584 stimulated by retinoic acid gene 6 homolog isoform ... 32 0.48
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 32 0.48
gi|110349719 titin isoform N2-A [Homo sapiens] 31 0.82
gi|110349717 titin isoform novex-2 [Homo sapiens] 31 0.82
gi|110349713 titin isoform novex-1 [Homo sapiens] 31 0.82
gi|110349715 titin isoform N2-B [Homo sapiens] 31 0.82
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 31 0.82
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 31 0.82
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 31 0.82
gi|222831620 interleukin 18 binding protein isoform a precursor ... 31 1.1
>gi|44662821 LRRN4 C-terminal like [Homo sapiens]
Length = 238
Score = 505 bits (1300), Expect = e-143
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MLGSPCLLWLLAVTFLVPRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPC 60
MLGSPCLLWLLAVTFLVPRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPC
Sbjct: 1 MLGSPCLLWLLAVTFLVPRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPC 60
Query: 61 KELQRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWD 120
KELQRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWD
Sbjct: 61 KELQRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWD 120
Query: 121 GSEAAQKGPPLNATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAF 180
GSEAAQKGPPLNATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAF
Sbjct: 121 GSEAAQKGPPLNATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAF 180
Query: 181 GPCSRLAVPPNPRTLVHAAVGVGTALALLSCAALVWHFCLRDRWGCPRRAAARAAGAL 238
GPCSRLAVPPNPRTLVHAAVGVGTALALLSCAALVWHFCLRDRWGCPRRAAARAAGAL
Sbjct: 181 GPCSRLAVPPNPRTLVHAAVGVGTALALLSCAALVWHFCLRDRWGCPRRAAARAAGAL 238
>gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens]
Length = 740
Score = 111 bits (277), Expect = 6e-25
Identities = 75/198 (37%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 27 DFEEEEADETETAWPPLPAVPCDYDHCRHLQVPCKELQRVGPAACLCPGLSSPAQPPDPP 86
D+ EEE E P VPCDY C+HLQ PC ELQR C CPGLS PDPP
Sbjct: 526 DYSEEEEGRKEEVGTPHQDVPCDYHPCKHLQTPCAELQR--RWRCRCPGLSGEDTIPDPP 583
Query: 87 RMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLL----WDGSEAAQKGPPLNATVRRAELKG 142
R+ V + A+VHWCAP S V Y + W G+++ + AT R+ L G
Sbjct: 584 RLQGVTETTDTS-ALVHWCAPNSVVHGYQIRYSAEGWAGNQSVV--GVIYATARQHPLYG 640
Query: 143 LKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAVPPNPRTLVHAAVGV 202
L PG Y VCV+AAN AG S+ +G PC+ P+ L+ G+
Sbjct: 641 LSPGTTYRVCVLAANRAGLSQPRSSGWR----------SPCAAFTTKPSFALLLS---GL 687
Query: 203 GTALALLSCAALVWHFCL 220
A LL + +V CL
Sbjct: 688 CAASGLLLASTVVLSACL 705
>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
Length = 987
Score = 38.9 bits (89), Expect = 0.004
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 85 PPRMGEVRIAAEEGRAV-VHWCAPFSP---VLHYWLLLWD-GSEAAQKGPPLNATVRRAE 139
PP + ++R+ ++ + W P +P VL Y + + G+E L + RAE
Sbjct: 434 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 493
Query: 140 LKGLKPGGIYVVCVVAANEAG 160
L+GLK G Y+V V A +EAG
Sbjct: 494 LRGLKRGASYLVQVRARSEAG 514
>gi|27437045 colony stimulating factor 3 receptor isoform d
precursor [Homo sapiens]
Length = 783
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVRRAELKG 142
P+PP +G+ SP+ HY + W ++ LNA+ R L G
Sbjct: 549 PEPPELGK------------------SPLTHY-TIFWTNAQNQSFSAILNASSRGFVLHG 589
Query: 143 LKPGGIYVVCVVAANEAGAS 162
L+P +Y + ++AA++AGA+
Sbjct: 590 LEPASLYHIHLMAASQAGAT 609
>gi|24496783 colony stimulating factor 3 receptor isoform c
precursor [Homo sapiens]
Length = 863
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVRRAELKG 142
P+PP +G+ SP+ HY + W ++ LNA+ R L G
Sbjct: 549 PEPPELGK------------------SPLTHY-TIFWTNAQNQSFSAILNASSRGFVLHG 589
Query: 143 LKPGGIYVVCVVAANEAGAS 162
L+P +Y + ++AA++AGA+
Sbjct: 590 LEPASLYHIHLMAASQAGAT 609
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVRRAELKG 142
P+PP +G+ SP+ HY + W ++ LNA+ R L G
Sbjct: 549 PEPPELGK------------------SPLTHY-TIFWTNAQNQSFSAILNASSRGFVLHG 589
Query: 143 LKPGGIYVVCVVAANEAGAS 162
L+P +Y + ++AA++AGA+
Sbjct: 590 LEPASLYHIHLMAASQAGAT 609
>gi|4503081 colony stimulating factor 3 receptor isoform a precursor
[Homo sapiens]
Length = 836
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVRRAELKG 142
P+PP +G+ SP+ HY + W ++ LNA+ R L G
Sbjct: 549 PEPPELGK------------------SPLTHY-TIFWTNAQNQSFSAILNASSRGFVLHG 589
Query: 143 LKPGGIYVVCVVAANEAGAS 162
L+P +Y + ++AA++AGA+
Sbjct: 590 LEPASLYHIHLMAASQAGAT 609
>gi|10140845 ephrin receptor EphA8 isoform 1 precursor [Homo
sapiens]
Length = 1005
Score = 38.1 bits (87), Expect = 0.007
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 104 WCAPFSP---VLHYWLLLWDGSEAAQKGPPLNATVRRAELKGLKPGGIYVVCVVAANEAG 160
W P P +L Y + ++ + Q L A RA + GLKPG YV V A AG
Sbjct: 460 WQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAG 519
Query: 161 ASRVPQA 167
R QA
Sbjct: 520 CGRFSQA 526
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 36.6 bits (83), Expect = 0.020
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 62 ELQRVGPAACLCPGLSSPAQPPDP--PRMGEVRIAAEEGRAV-VHWCAPFSPVLHYWLLL 118
E QRVGP + + G+++P P P PR+GE+ +AA +V + W P +L+
Sbjct: 3237 EGQRVGPVSTV--GITAPLPTPLPVEPRLGELAVAAVTSDSVGLSWTVAQGP-FDSFLVQ 3293
Query: 119 WDGSEAAQKGPPLNATVRRAELKGLKPGGIY 149
+ ++ + P++ +R + GL P Y
Sbjct: 3294 YRDAQGQPQAVPVSGDLRAVAVSGLDPARKY 3324
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 64 QRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEEGRAV-VHWCAPFSPVLHYWLLLWDGS 122
+R+GP + ++P + PP +GE+ +A E ++ + W P +++ + +
Sbjct: 3428 KRLGPISA--DSTTAPLEKELPPHLGELTVAEETSSSLRLSWTVAQGP-FDSFVVQYRDT 3484
Query: 123 EAAQKGPPLNATVRRAELKGLKPGGIY 149
+ + P+ A R ++ L+PG Y
Sbjct: 3485 DGQPRAVPVAADQRTVTVEDLEPGKKY 3511
Score = 27.7 bits (60), Expect = 9.1
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 56 LQVPCKELQRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYW 115
L+ P K G A L P L SP + E+R E A V+W P S +
Sbjct: 3734 LRGPHKADSIQGTARTLSPVLESPRDL----QFSEIR----ETSAKVNWMPPPSRADSFK 3785
Query: 116 LL--LWDGSEAAQKGPPLNATVRRAELKGLKPGGIYVVCVVA 155
+ L DG E + ++ R +L+GL PG Y V VV+
Sbjct: 3786 VSYQLADGGEP--QSVQVDGQARTQKLQGLIPGARYEVTVVS 3825
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 35.8 bits (81), Expect = 0.033
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 70 ACLCPGLSSPAQPPDPP-RMGEVRIAAEEGRAVVHWCAPFS----PVLHYWLLLWDGSEA 124
A L P SS A D P + V++ + + V W P PV HY + + S
Sbjct: 24 AALLPVASSAAASVDHPLKPRHVKLLSTKMGLKVTWDPPKDATSRPVEHY-NIAYGKSLK 82
Query: 125 AQKGPPLNATVRRAELKGLKPGGIYVVCVVAANEAGASR-----VPQAGGEGLEGADIPA 179
+ K +NA ++ ++PG +Y V + A N +G SR GGE +E P
Sbjct: 83 SLKYIKVNAETYSFLIEDVEPGVVYFVLLTAENHSGVSRPVYRAESPPGGEWIEIDGFPI 142
Query: 180 FGP 182
GP
Sbjct: 143 KGP 145
Score = 28.9 bits (63), Expect = 4.1
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 85 PPRMGEVRIAAEEGRAVVHWCAPF-----SPVLHYWLLLWDGSEAAQKG-PPLNATVRRA 138
P + VR+ + + R V W AP SP LL G + PL R
Sbjct: 158 PNKPLRVRVRSSDDRLSVAWKAPRLSGAKSPRRSRGFLLGYGESGRKMNYVPLTRDERTH 217
Query: 139 ELKGLKPGGIYVVCVVAANEAGASR 163
E+K L +YVV + + N G S+
Sbjct: 218 EIKKLASESVYVVSLQSMNSQGRSQ 242
>gi|83281200 protogenin [Homo sapiens]
Length = 1150
Score = 34.7 bits (78), Expect = 0.075
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSP--VLHYWLLLWDGSEAAQKGP----PLN 132
P P PP +G E+ A+V W P P V+ + +L+ +A G
Sbjct: 816 PEAPAGPP-VGVKVTLIEDDTALVSWKPPDGPETVVTRYTILYASRKAWIAGEWQVLHRE 874
Query: 133 ATVRRAELKGLKPGGIYVVCVVAANEAG---------ASRVPQAGGEG------LEGADI 177
+ A L+ L G +Y+V + A+NE G + +P+ E L+ AD
Sbjct: 875 GAITMALLENLVAGNVYIVKISASNEVGEGPFSNSVELAVLPKETSESNQRPKRLDSADA 934
Query: 178 PAFGPCSRLAVPPNPRTLVHAAVGVGTALALLSCAALV 215
+ L + +++ AVGVG AL + L+
Sbjct: 935 KVYSGYYHL----DQKSMTGIAVGVGIALTCILICVLI 968
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
Score = 27.7 bits (60), Expect = 9.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 138 AELKGLKPGGIYVVCVVAANE 158
AEL+GL+PG Y V VVA ++
Sbjct: 1687 AELQGLRPGSEYTVSVVALHD 1707
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
Score = 27.7 bits (60), Expect = 9.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 138 AELKGLKPGGIYVVCVVAANE 158
AEL+GL+PG Y V VVA ++
Sbjct: 1778 AELQGLRPGSEYTVSVVALHD 1798
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
Score = 27.7 bits (60), Expect = 9.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 138 AELKGLKPGGIYVVCVVAANE 158
AEL+GL+PG Y V VVA ++
Sbjct: 1687 AELQGLRPGSEYTVSVVALHD 1707
>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
Length = 2296
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
Score = 27.7 bits (60), Expect = 9.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 138 AELKGLKPGGIYVVCVVAANE 158
AEL+GL+PG Y V VVA ++
Sbjct: 1778 AELQGLRPGSEYTVSVVALHD 1798
>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
Length = 2176
Score = 33.1 bits (74), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 SSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVR 136
++P PPDP + +V ++ VV W P +P+ Y ++ E + L T
Sbjct: 809 TAPDAPPDPT-VDQV----DDTSIVVRWSRPQAPITGYRIVYSPSVEGSSTELNLPETAN 863
Query: 137 RAELKGLKPGGIYVVCVVAANE 158
L L+PG Y + + A E
Sbjct: 864 SVTLSDLQPGVQYNITIYAVEE 885
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 18 PRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPCKELQRVGPAACLCPGLS 77
PRA+P + E +PP+ PC+ P + +GP L LS
Sbjct: 608 PRARPT----LHSRHRELGEFPYPPVSLPPCES--------PSSPMASMGPEPHLPTHLS 655
Query: 78 SPAQPPD--PPRMGEVRIAAEEGRAVVHW 104
SPA+PPD P G E+G V W
Sbjct: 656 SPARPPDNLSPEWG-----GEQGVPVPPW 679
>gi|32261332 seizure related 6 homolog (mouse)-like precursor [Homo
sapiens]
Length = 1024
Score = 32.7 bits (73), Expect = 0.28
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 17 VPRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPCKELQRVG--PAACLCP 74
+P PL P++ + A + P L V R +QR G PA+
Sbjct: 96 IPALSPLLPEEARPKHALPPKKKLPSLKQVNSARKQLRPKATSAATVQRAGSQPASQGLD 155
Query: 75 GLSSPAQPPDPPRMGEVRIAAEEGRAVVHW 104
LSS + P PP + +A+EE V W
Sbjct: 156 LLSSSTEKPGPPGDPDPIVASEEASEVPLW 185
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 32.3 bits (72), Expect = 0.37
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 102 VHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATVRRAE----LKGLKPGGIYVVCVVAAN 157
V W P VLHYWL + A+ GP + +V A L L+ Y V V A
Sbjct: 759 VSWTPPLGRVLHYWLTY---APASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIY 815
Query: 158 EAGASRVPQAGGE 170
AG S A G+
Sbjct: 816 AAGRSEAVSATGQ 828
>gi|217330584 stimulated by retinoic acid gene 6 homolog isoform b
[Homo sapiens]
Length = 658
Score = 32.0 bits (71), Expect = 0.48
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 165 PQAGGEGLEGADIPAFGPCSRLAVPPNPRTLVHAAVGVGTALALLSCAALV-----WHFC 219
PQ G E ++P+ ++PP L HA + + L LL A LV W C
Sbjct: 28 PQGGEELQPEGEVPS----CHTSIPPG---LYHACLASLSILVLLLLAMLVRRRQLWPDC 80
Query: 220 LRDRWGCPRRAAARAA 235
+R R G PR A AA
Sbjct: 81 VRGRPGLPRPRAVPAA 96
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/90 (40%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 136 RRAELKGLKPGGIYVVCVVAANEAGASRVPQA-------GGEGLE-GADIPAFGPCSRLA 187
R A L+GL PG +Y V AA AG VP A LE G ++ A G RLA
Sbjct: 828 RSAMLRGLVPGLLYRTLVAAATSAGVG-VPSAPVLVQLPSPPDLEPGLEVGA-GLAVRLA 885
Query: 188 -VPPNPRTLVHAAVGVGTALALLSCAALVW 216
V P L + G AL L CAAL W
Sbjct: 886 RVLREPAFLAGSGAACG-ALLLGLCAALYW 914
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 31.2 bits (69), Expect = 0.82
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 78 SPAQPPDPPRMGEVRIAAEEGRAVVHWCAP----FSPVLHYWLLLWDGSEAAQKGPPLN- 132
+P PPDPP+ EV ++ VV W P S +++Y ++ +A Q+ N
Sbjct: 21650 NPYGPPDPPKNPEVTTITKDS-MVVCWGHPDSDGGSEIINY--IVERRDKAGQRWIKCNK 21706
Query: 133 --ATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAVPP 190
T R ++ GL G Y ++A N AG S P + D F P P
Sbjct: 21707 KTLTDLRYKVSGLTEGHEYEFRIMAENAAGIS-APSPTSPFYKACD-TVFKP----GPPG 21760
Query: 191 NPRTL 195
NPR L
Sbjct: 21761 NPRVL 21765
Score = 29.3 bits (64), Expect = 3.1
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPF----SPVLHYWL-LLWDGSEAAQKGPPLNA 133
P QPPDPP EV E + W P S ++ Y + + G E ++
Sbjct: 14576 PKQPPDPPVDVEVHNPTAEAMTIT-WKPPLYDGGSKIMGYIIEKIAKGEERWKRCNEHLV 14634
Query: 134 TVRRAELKGLKPGGIYVVCVVAANEAGASRVPQA 167
+ KGL+ G Y V A N AG S +A
Sbjct: 14635 PILTYTAKGLEEGKEYQFRVRAENAAGISEPSRA 14668
Score = 28.9 bits (63), Expect = 4.1
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFS----PVLHYWLLLWDGSEAAQKGPPLNATVRRA 138
P PP V+ +E AV+ W P + PV +Y + + S+ A N
Sbjct: 26278 PGPPTNITVQDVTKES-AVLSWDVPENDGGAPVKNYHIEKREASKKAWVSVTNNCNRLSY 26336
Query: 139 ELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAV 188
++ L+ G IY V NE G +P EG++ + P+ P +L V
Sbjct: 26337 KVTNLQEGAIYYFRVSGENEFGVG-IPAETKEGVKITEKPS--PPEKLGV 26383
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 31.2 bits (69), Expect = 0.82
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 78 SPAQPPDPPRMGEVRIAAEEGRAVVHWCAP----FSPVLHYWLLLWDGSEAAQKGPPLN- 132
+P PPDPP+ EV ++ VV W P S +++Y ++ +A Q+ N
Sbjct: 15345 NPYGPPDPPKNPEVTTITKDS-MVVCWGHPDSDGGSEIINY--IVERRDKAGQRWIKCNK 15401
Query: 133 --ATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAVPP 190
T R ++ GL G Y ++A N AG S P + D F P P
Sbjct: 15402 KTLTDLRYKVSGLTEGHEYEFRIMAENAAGIS-APSPTSPFYKACD-TVFKP----GPPG 15455
Query: 191 NPRTL 195
NPR L
Sbjct: 15456 NPRVL 15460
Score = 29.3 bits (64), Expect = 3.1
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPF----SPVLHYWL-LLWDGSEAAQKGPPLNA 133
P QPPDPP EV E + W P S ++ Y + + G E ++
Sbjct: 8271 PKQPPDPPVDVEVHNPTAEAMTIT-WKPPLYDGGSKIMGYIIEKIAKGEERWKRCNEHLV 8329
Query: 134 TVRRAELKGLKPGGIYVVCVVAANEAGASRVPQA 167
+ KGL+ G Y V A N AG S +A
Sbjct: 8330 PILTYTAKGLEEGKEYQFRVRAENAAGISEPSRA 8363
Score = 28.9 bits (63), Expect = 4.1
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFS----PVLHYWLLLWDGSEAAQKGPPLNATVRRA 138
P PP V+ +E AV+ W P + PV +Y + + S+ A N
Sbjct: 19973 PGPPTNITVQDVTKES-AVLSWDVPENDGGAPVKNYHIEKREASKKAWVSVTNNCNRLSY 20031
Query: 139 ELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAV 188
++ L+ G IY V NE G +P EG++ + P+ P +L V
Sbjct: 20032 KVTNLQEGAIYYFRVSGENEFGVG-IPAETKEGVKITEKPS--PPEKLGV 20078
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 31.2 bits (69), Expect = 0.82
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 78 SPAQPPDPPRMGEVRIAAEEGRAVVHWCAP----FSPVLHYWLLLWDGSEAAQKGPPLN- 132
+P PPDPP+ EV ++ VV W P S +++Y ++ +A Q+ N
Sbjct: 15278 NPYGPPDPPKNPEVTTITKDS-MVVCWGHPDSDGGSEIINY--IVERRDKAGQRWIKCNK 15334
Query: 133 --ATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAVPP 190
T R ++ GL G Y ++A N AG S P + D F P P
Sbjct: 15335 KTLTDLRYKVSGLTEGHEYEFRIMAENAAGIS-APSPTSPFYKACD-TVFKP----GPPG 15388
Query: 191 NPRTL 195
NPR L
Sbjct: 15389 NPRVL 15393
Score = 29.3 bits (64), Expect = 3.1
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPF----SPVLHYWL-LLWDGSEAAQKGPPLNA 133
P QPPDPP EV E + W P S ++ Y + + G E ++
Sbjct: 8204 PKQPPDPPVDVEVHNPTAEAMTIT-WKPPLYDGGSKIMGYIIEKIAKGEERWKRCNEHLV 8262
Query: 134 TVRRAELKGLKPGGIYVVCVVAANEAGASRVPQA 167
+ KGL+ G Y V A N AG S +A
Sbjct: 8263 PILTYTAKGLEEGKEYQFRVRAENAAGISEPSRA 8296
Score = 28.9 bits (63), Expect = 4.1
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFS----PVLHYWLLLWDGSEAAQKGPPLNATVRRA 138
P PP V+ +E AV+ W P + PV +Y + + S+ A N
Sbjct: 19906 PGPPTNITVQDVTKES-AVLSWDVPENDGGAPVKNYHIEKREASKKAWVSVTNNCNRLSY 19964
Query: 139 ELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAV 188
++ L+ G IY V NE G +P EG++ + P+ P +L V
Sbjct: 19965 KVTNLQEGAIYYFRVSGENEFGVG-IPAETKEGVKITEKPS--PPEKLGV 20011
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 31.2 bits (69), Expect = 0.82
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 78 SPAQPPDPPRMGEVRIAAEEGRAVVHWCAP----FSPVLHYWLLLWDGSEAAQKGPPLN- 132
+P PPDPP+ EV ++ VV W P S +++Y ++ +A Q+ N
Sbjct: 15153 NPYGPPDPPKNPEVTTITKDS-MVVCWGHPDSDGGSEIINY--IVERRDKAGQRWIKCNK 15209
Query: 133 --ATVRRAELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAVPP 190
T R ++ GL G Y ++A N AG S P + D F P P
Sbjct: 15210 KTLTDLRYKVSGLTEGHEYEFRIMAENAAGIS-APSPTSPFYKACD-TVFKP----GPPG 15263
Query: 191 NPRTL 195
NPR L
Sbjct: 15264 NPRVL 15268
Score = 29.3 bits (64), Expect = 3.1
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPF----SPVLHYWL-LLWDGSEAAQKGPPLNA 133
P QPPDPP EV E + W P S ++ Y + + G E ++
Sbjct: 8079 PKQPPDPPVDVEVHNPTAEAMTIT-WKPPLYDGGSKIMGYIIEKIAKGEERWKRCNEHLV 8137
Query: 134 TVRRAELKGLKPGGIYVVCVVAANEAGASRVPQA 167
+ KGL+ G Y V A N AG S +A
Sbjct: 8138 PILTYTAKGLEEGKEYQFRVRAENAAGISEPSRA 8171
Score = 28.9 bits (63), Expect = 4.1
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 83 PDPPRMGEVRIAAEEGRAVVHWCAPFS----PVLHYWLLLWDGSEAAQKGPPLNATVRRA 138
P PP V+ +E AV+ W P + PV +Y + + S+ A N
Sbjct: 19781 PGPPTNITVQDVTKES-AVLSWDVPENDGGAPVKNYHIEKREASKKAWVSVTNNCNRLSY 19839
Query: 139 ELKGLKPGGIYVVCVVAANEAGASRVPQAGGEGLEGADIPAFGPCSRLAV 188
++ L+ G IY V NE G +P EG++ + P+ P +L V
Sbjct: 19840 KVTNLQEGAIYYFRVSGENEFGVG-IPAETKEGVKITEKPS--PPEKLGV 19886
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 31.2 bits (69), Expect = 0.82
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 18 PRAQPLAPQDFEEEEADETETAWPPLPAVPCDYDHCRHLQVPCKELQRVGPAACLCPGLS 77
P AQP PQ E+E E PPL ++ +Q+ ++LQ+V P L P +
Sbjct: 904 PMAQP--PQVLLEDE----EPPAPPLTSM--------QMQLYLQQLQKVQPPTPLLPSVK 949
Query: 78 SPAQPPDP 85
+QPP P
Sbjct: 950 VQSQPPPP 957
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor
[Homo sapiens]
Length = 3063
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 76 LSSPAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLHYWLLLWDGSEAAQKGPPLNATV 135
LSS DPP +I +E + W P P++ Y + + ++ K L+A+
Sbjct: 18 LSSIEAEVDPPSDLNFKII-DENTVHMSWAKPVDPIVGYRITVDPTTDGPTKEFTLSAST 76
Query: 136 RRAELKGLKPGGIYVVCVVAANEAGASRVPQAG 168
L L P YVV + + +E S VP G
Sbjct: 77 TETLLSELVPETEYVVTITSYDEVEES-VPVIG 108
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 31.2 bits (69), Expect = 0.82
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 79 PAQPPDPPRMGEVRIAAEEGRAVVHWCAPFSPVLH---------YWLLLWDGSEAAQKGP 129
P+QPP+ R ++ AV+ W P L+ +W L DG +
Sbjct: 1150 PSQPPENVRA----LSITSDVAVISWSEPPRSTLNGVLKGYRVIFWSLYVDGEWGEMQN- 1204
Query: 130 PLNATVRRAELKGLKPGGIYVVCVVAANEAG 160
+ T R EL+G++ Y V V+A +AG
Sbjct: 1205 -ITTTRERVELRGMEKFTNYSVQVLAYTQAG 1234
>gi|222831620 interleukin 18 binding protein isoform a precursor
[Homo sapiens]
Length = 194
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 54 RHLQVPCKELQRVGPAACLCPGLSSPAQPPDPPRMGEVRIAAEE-----GRAVVHWCAPF 108
R + PC V PAA CP L + P G + ++ ++++W
Sbjct: 45 RSTKDPCPSQPPVFPAAKQCPALEVTWPEVEVPLNGTLSLSCVACSRFPNFSILYWLGNG 104
Query: 109 SPVLHYWLLLWDGSEAAQKGPPLNATVRRAELKGLKP 145
S + H LW+GS + ++G + L+ L P
Sbjct: 105 SFIEHLPGRLWEGSTSRERGSTGTQLCKALVLEQLTP 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,999,397
Number of Sequences: 37866
Number of extensions: 649886
Number of successful extensions: 2928
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2776
Number of HSP's gapped (non-prelim): 232
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.