Guide to the Human Genome
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Name: STRA6 Sequence: fasta or formatted (658aa) NCBI GI: 217330584
Description:

stimulated by retinoic acid gene 6 homolog isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [667aa] stimulated by retinoic acid gene 6 homolog isoform a
alt prot [667aa] stimulated by retinoic acid gene 6 homolog isoform a
alt prot [667aa] stimulated by retinoic acid gene 6 homolog isoform a
alt prot [159aa] stimulated by retinoic acid gene 6 homolog isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         66           2
 C cysteine            2.1         14           1
 D aspartate           2.3         15           1
 E glutamate           3.2         21           2
 F phenylalanine       3.5         23           2
 G glycine             6.7         44           2
 H histidine           3.3         22           2
 I isoleucine          2.6         17           2
 K lysine              2.4         16           2
 L leucine            18.1        119           4
 M methionine          2.0         13           1
 N asparagine          1.7         11           1
 P proline             6.4         42           2
 Q glutamine           4.6         30           2
 R arginine            5.6         37           3
 S serine              7.8         51           2
 T threonine           5.5         36           2
 V valine              6.2         41           2
 W tryptophan          2.1         14           1
 Y tyrosine            4.0         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stimulated by retinoic acid gene 6 homolog isoform ... 
STRA6                 0.994   stimulated by retinoic acid gene 6 homolog isoform ...
STRA6                 0.994   stimulated by retinoic acid gene 6 homolog isoform ...
STRA6                 0.994   stimulated by retinoic acid gene 6 homolog isoform ...
STRA6                 0.189   stimulated by retinoic acid gene 6 homolog isoform ...
LRRN4CL               0.005   LRRN4 C-terminal like 
CLN5                  0.005   ceroid-lipofuscinosis, neuronal 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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