Guide to the Human Genome
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Name: LRRN4CL Sequence: fasta or formatted (238aa) NCBI GI: 44662821
Description:

LRRN4 C-terminal like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.5         37           3
 C cysteine            5.0         12           1
 D aspartate           3.4          8           1
 E glutamate           6.3         15           4
 F phenylalanine       2.1          5           1
 G glycine             8.4         20           2
 H histidine           2.5          6           1
 I isoleucine          1.3          3           1
 K lysine              1.7          4           1
 L leucine            11.8         28           3
 M methionine          0.8          2           1
 N asparagine          1.3          3           1
 P proline            11.8         28           2
 Q glutamine           2.9          7           1
 R arginine            6.7         16           2
 S serine              3.4          8           2
 T threonine           2.5          6           1
 V valine              8.4         20           2
 W tryptophan          2.9          7           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LRRN4 C-terminal like 
LRRN4                 0.179   leucine rich repeat neuronal 4 
EPHB4                 0.029   EPH receptor B4 precursor 
CSF3R                 0.029   colony stimulating factor 3 receptor isoform d precu...
CSF3R                 0.029   colony stimulating factor 3 receptor isoform c precu...
CSF3R                 0.029   colony stimulating factor 3 receptor isoform b precu...
CSF3R                 0.029   colony stimulating factor 3 receptor isoform a precur...
EPHA8                 0.027   ephrin receptor EphA8 isoform 1 precursor 
TNXB                  0.025   tenascin XB isoform 1 precursor 
FNDC1                 0.023   fibronectin type III domain containing 1 
PRTG                  0.021   protogenin 
FN1                   0.017   fibronectin 1 isoform 3 preproprotein 
FN1                   0.017   fibronectin 1 isoform 1 preproprotein 
FN1                   0.017   fibronectin 1 isoform 4 preproprotein 
FN1                   0.017   fibronectin 1 isoform 5 preproprotein 
FN1                   0.017   fibronectin 1 isoform 2 preproprotein 
FN1                   0.017   fibronectin 1 isoform 6 preproprotein 
ARMC5                 0.017   armadillo repeat containing 5 isoform b 
SEZ6L                 0.017   seizure related 6 homolog (mouse)-like precursor [Ho...
COL20A1               0.015   collagen, type XX, alpha 1 
STRA6                 0.015   stimulated by retinoic acid gene 6 homolog isoform ...
ROBO3                 0.015   roundabout, axon guidance receptor, homolog 3 
TTN                   0.013   titin isoform N2-A 
TTN                   0.013   titin isoform novex-2 
TTN                   0.013   titin isoform novex-1 
TTN                   0.013   titin isoform N2-B 
BRD4                  0.013   bromodomain-containing protein 4 isoform long 
COL12A1               0.013   collagen, type XII, alpha 1 long isoform precursor [...
DSCAML1               0.013   Down syndrome cell adhesion molecule like 1 
IL18BP                0.013   interleukin 18 binding protein isoform a precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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