Guide to the Human Genome
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Name: IYD Sequence: fasta or formatted (289aa) NCBI GI: 42794271
Description:

iodotyrosine dehalogenase 1

Referenced in:

Thyroid and Thyroid Hormone Receptor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         18           2
 C cysteine            1.0          3           1
 D aspartate           4.8         14           1
 E glutamate           9.3         27           5
 F phenylalanine       2.8          8           1
 G glycine             3.8         11           1
 H histidine           3.5         10           1
 I isoleucine          6.9         20           2
 K lysine              8.3         24           3
 L leucine             9.3         27           2
 M methionine          2.8          8           1
 N asparagine          4.2         12           1
 P proline             5.9         17           1
 Q glutamine           2.4          7           1
 R arginine            5.9         17           2
 S serine              4.2         12           2
 T threonine           5.2         15           3
 V valine              8.7         25           3
 W tryptophan          2.1          6           1
 Y tyrosine            2.8          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iodotyrosine dehalogenase 1 
WDR87                 0.018   NYD-SP11 protein 
TTN                   0.016   titin isoform N2-A 
MYT1L                 0.014   myelin transcription factor 1-like 
GCC1                  0.012   Golgi coiled-coil protein 1 
MYST4                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
PELP1                 0.012   proline, glutamic acid and leucine rich protein 1 [...
LOC100289089          0.011   PREDICTED: hypothetical protein XP_002343359 
RYR1                  0.011   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.011   skeletal muscle ryanodine receptor isoform 1 
TCHH                  0.009   trichohyalin 
SPANXN2               0.009   SPANX-N2 protein 
C4orf41               0.009   hypothetical protein LOC60684 isoform b 
C4orf41               0.009   hypothetical protein LOC60684 isoform a 
C3orf44               0.009   hypothetical protein LOC131831 
SKAP1                 0.009   src kinase associated phosphoprotein 1 isoform 2 [H...
SKAP1                 0.009   src kinase associated phosphoprotein 1 isoform 1 [H...
EVPL                  0.009   envoplakin 
BRD7                  0.009   bromodomain containing 7 
PTRH1                 0.009   peptidyl-tRNA hydrolase 1 homolog 
AKD1                  0.007   adenylate kinase domain containing 1 isoform 1 [Hom...
SAMD4B                0.007   sterile alpha motif domain containing 4B 
PDE3A                 0.007   phosphodiesterase 3A 
PION                  0.007   pigeon homolog 
C5orf25               0.007   hypothetical protein LOC375484 
SGK269                0.007   NKF3 kinase family member 
C12orf11              0.007   hypothetical protein LOC55726 
MTNR1A                0.005   melatonin receptor 1A 
MTERFD2               0.005   MTERF domain containing 2 
LDB3                  0.005   LIM domain binding 3 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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