Guide to the Human Genome
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Name: C5orf25 Sequence: fasta or formatted (457aa) NCBI GI: 196259796
Description:

hypothetical protein LOC375484

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         18           2
 C cysteine            1.3          6           1
 D aspartate           5.0         23           2
 E glutamate           6.1         28           3
 F phenylalanine       3.5         16           2
 G glycine             4.2         19           2
 H histidine           2.8         13           1
 I isoleucine          5.5         25           2
 K lysine              5.3         24           1
 L leucine            12.5         57           3
 M methionine          2.8         13           2
 N asparagine          3.3         15           2
 P proline             5.7         26           2
 Q glutamine           7.7         35           2
 R arginine            6.8         31           2
 S serine              8.3         38           3
 T threonine           5.7         26           2
 V valine              6.8         31           2
 W tryptophan          1.3          6           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC375484 
PEG3                  0.010   paternally expressed 3 isoform 3 
PEG3                  0.009   paternally expressed 3 isoform 1 
PEG3                  0.009   paternally expressed 3 isoform 2 
PEG3                  0.009   paternally expressed 3 isoform 1 
PEG3                  0.009   paternally expressed 3 isoform 1 
TCP11                 0.008   t-complex 11 isoform 1 
TCP11                 0.008   t-complex 11 isoform 2 
FLJ37078              0.008   hypothetical protein LOC222183 
ANGPT1                0.006   angiopoietin 1 
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.006   PREDICTED: similar to ribonucleic acid binding prote...
PAX4                  0.006   paired box 4 
MYH15                 0.006   myosin, heavy polypeptide 15 
RNPS1                 0.006   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.006   RNA-binding protein S1, serine-rich domain 
OR6C75                0.006   olfactory receptor, family 6, subfamily C, member 75...
PDE4D                 0.006   phosphodiesterase 4D isoform 1 
PDE4D                 0.006   phosphodiesterase 4D isoform 2 
PDE4A                 0.006   phosphodiesterase 4A isoform 3 
PDE4A                 0.006   phosphodiesterase 4A isoform 2 
PDE4A                 0.006   phosphodiesterase 4A isoform 1 
PDE4A                 0.006   phosphodiesterase 4A isoform 4 
MAGEE1                0.006   melanoma antigen family E, 1 
LOC100291835          0.005   PREDICTED: hypothetical protein XP_002346266 
AKAP9                 0.005   A-kinase anchor protein 9 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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