Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SKAP1 Sequence: fasta or formatted (358aa) NCBI GI: 115527076
Description:

src kinase associated phosphoprotein 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {359aa} src kinase associated phosphoprotein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           3
 C cysteine            1.4          5           1
 D aspartate           9.2         33           2
 E glutamate          12.6         45           5
 F phenylalanine       3.9         14           2
 G glycine             7.5         27           2
 H histidine           2.0          7           1
 I isoleucine          4.5         16           1
 K lysine              5.6         20           2
 L leucine             8.7         31           2
 M methionine          1.1          4           1
 N asparagine          2.0          7           1
 P proline             3.9         14           1
 Q glutamine           4.7         17           2
 R arginine            5.6         20           2
 S serine              8.1         29           2
 T threonine           3.6         13           2
 V valine              3.6         13           2
 W tryptophan          2.2          8           2
 Y tyrosine            5.0         18           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   src kinase associated phosphoprotein 1 isoform 2 [H... 
SKAP1                 0.993   src kinase associated phosphoprotein 1 isoform 1 [H...
SKAP2                 0.373   src kinase associated phosphoprotein 2 
CD2AP                 0.046   CD2-associated protein 
CNKSR1                0.042   connector enhancer of kinase suppressor of Ras 1 [H...
IPCEF1                0.040   phosphoinositide-binding protein PIP3-E isoform 1 [...
IPCEF1                0.040   phosphoinositide-binding protein PIP3-E isoform 1 [...
IPCEF1                0.040   phosphoinositide-binding protein PIP3-E isoform 2 [H...
CNKSR2                0.040   connector enhancer of kinase suppressor of Ras 2 [Ho...
SH3YL1                0.039   SH3 domain containing, Ysc84-like 1 isoform 2 [Homo...
MAP3K9                0.038   mitogen-activated protein kinase kinase kinase 9 [Ho...
C1orf113              0.036   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.036   SH3 domain-containing protein C1orf113 isoform 2 [H...
SH3YL1                0.035   SH3 domain containing, Ysc84-like 1 isoform 1 [Homo...
MYO10                 0.035   myosin X 
SWAP70                0.033   SWAP-70 protein 
ABI2                  0.032   abl interactor 2 
SH3BP2                0.031   SH3-domain binding protein 2 isoform b 
SH3BP2                0.031   SH3-domain binding protein 2 isoform c 
SH3BP2                0.031   SH3-domain binding protein 2 isoform a 
SH3BP2                0.031   SH3-domain binding protein 2 isoform a 
NPHP1                 0.031   nephrocystin 1 isoform 4 
NPHP1                 0.031   nephrocystin 1 isoform 3 
NPHP1                 0.031   nephrocystin 1 isoform 2 
NPHP1                 0.031   nephrocystin 1 isoform 1 
RASGRF1               0.031   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.031   Ras protein-specific guanine nucleotide-releasing fa...
ITSN1                 0.031   intersectin 1 isoform ITSN-s 
ITSN1                 0.031   intersectin 1 isoform ITSN-l 
STAM2                 0.029   signal transducing adaptor molecule 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press