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Search of human proteins with 12669915
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12669915 E2F transcription factor 4 [Homo sapiens]
(413 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12669915 E2F transcription factor 4 [Homo sapiens] 817 0.0
gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens] 352 4e-97
gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens] 351 6e-97
gi|4758226 E2F transcription factor 2 [Homo sapiens] 167 2e-41
gi|134142813 E2F transcription factor 5 isoform 3 [Homo sapiens] 157 2e-38
gi|4503433 E2F transcription factor 3 [Homo sapiens] 155 5e-38
gi|12669911 E2F transcription factor 1 [Homo sapiens] 137 2e-32
gi|109637795 E2F transcription factor 6 [Homo sapiens] 122 6e-28
gi|145580626 E2F transcription factor 7 [Homo sapiens] 55 9e-08
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 55 9e-08
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 55 9e-08
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 55 9e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 55 9e-08
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 55 1e-07
gi|38505226 E2F family member 8 [Homo sapiens] 53 4e-07
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 1e-06
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 50 4e-06
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 50 5e-06
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 50 5e-06
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 49 8e-06
gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo s... 48 2e-05
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 48 2e-05
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 47 4e-05
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 47 4e-05
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 47 4e-05
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 47 4e-05
gi|116284392 mucin 2 precursor [Homo sapiens] 47 4e-05
gi|55750053 atrophin-1 [Homo sapiens] 47 4e-05
gi|55750041 atrophin-1 [Homo sapiens] 47 4e-05
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 46 5e-05
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 817 bits (2110), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 1 MAEAGPQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYD 60
MAEAGPQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYD
Sbjct: 1 MAEAGPQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYD 60
Query: 61 ITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVW 120
ITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVW
Sbjct: 61 ITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVW 120
Query: 121 VQQSIRNVTEDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQ 180
VQQSIRNVTEDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQ
Sbjct: 121 VQQSIRNVTEDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQ 180
Query: 181 IHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEAS 240
IHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEAS
Sbjct: 181 IHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEAS 240
Query: 241 RPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQ 300
RPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQ
Sbjct: 241 RPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQ 300
Query: 301 SSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTR 360
SSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTR
Sbjct: 301 SSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTR 360
Query: 361 ECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLNL 413
ECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLNL
Sbjct: 361 ECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLNL 413
>gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]
Length = 346
Score = 352 bits (903), Expect = 4e-97
Identities = 213/414 (51%), Positives = 251/414 (60%), Gaps = 108/414 (26%)
Query: 6 PQAPPPP------GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIY 59
PQ PPPP G SRHEKSLGLLTTKFVSLLQEAKDGVLDLK AADTLAVRQKRRIY
Sbjct: 33 PQPPPPPQLGGAGGGSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIY 92
Query: 60 DITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKV 119
DITNVLEGI LIEKKSKNSIQWKGVG GCNT+E+ D+L LKAEIE+L+ +E+ELDQ K+
Sbjct: 93 DITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKL 152
Query: 120 WVQQSIRNVTEDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPE-GLNGQKK 178
W+QQSI+NV +D N+ +YVTHEDIC CF GDTLLAI+APSGT LEVPIPE G NGQKK
Sbjct: 153 WLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKK 212
Query: 179 YQIHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQE 238
YQI+LKS SGPI VLL+NKE+ SS PV PVP PP +
Sbjct: 213 YQINLKSHSGPIHVLLINKESSSSKPVVFPVP---------------PP---------DD 248
Query: 239 ASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
++P+S LTP T K S +LP + ++
Sbjct: 249 LTQPSSQSLTPV-------------------------TPQKSSMATQNLPEQHVSERSQA 283
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDP 358
LQ ++ D SS+ S
Sbjct: 284 LQQTSATDISSAGS---------------------------------------------- 297
Query: 359 TRECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLN 412
+S ++++ELMSS+VF PLLRLSP P D DY +NLD++EGVCDLFDV +LN
Sbjct: 298 ----ISGDIIDELMSSDVF-PLLRLSPTPAD-DYNFNLDDNEGVCDLFDVQILN 345
>gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]
Length = 345
Score = 351 bits (901), Expect = 6e-97
Identities = 213/414 (51%), Positives = 250/414 (60%), Gaps = 109/414 (26%)
Query: 6 PQAPPPP------GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIY 59
PQ PPPP G SRHEKSLGLLTTKFVSLLQEAKDGVLDLK AADTLAVRQKRRIY
Sbjct: 33 PQPPPPPQLGGAGGGSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIY 92
Query: 60 DITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKV 119
DITNVLEGI LIEKKSKNSIQWKGVG GCNT+E+ D+L LKAEIE+L+ +E+ELDQ K+
Sbjct: 93 DITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKL 152
Query: 120 WVQQSIRNVTEDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPE-GLNGQKK 178
W+QQSI+NV +D N+ +YVTHEDIC CF GDTLLAI+APSGT LEVPIPE G NGQKK
Sbjct: 153 WLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKK 212
Query: 179 YQIHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQE 238
YQI+LKS SGPI VLL+NKE+ SS PV PV PPP +
Sbjct: 213 YQINLKSHSGPIHVLLINKESSSSKPVVFPV---------------PPP---------DD 248
Query: 239 ASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
++P+S LTP T K S +LP + ++
Sbjct: 249 LTQPSSQSLTPV-------------------------TPQKSSMATQNLPEQHVSERSQA 283
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDP 358
LQ ++ D SS S
Sbjct: 284 LQQTSATDISSGS----------------------------------------------- 296
Query: 359 TRECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLN 412
+S ++++ELMSS+VF PLLRLSP P D DY +NLD++EGVCDLFDV +LN
Sbjct: 297 ----ISGDIIDELMSSDVF-PLLRLSPTPAD-DYNFNLDDNEGVCDLFDVQILN 344
>gi|4758226 E2F transcription factor 2 [Homo sapiens]
Length = 437
Score = 167 bits (423), Expect = 2e-41
Identities = 114/261 (43%), Positives = 148/261 (56%), Gaps = 19/261 (7%)
Query: 6 PQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVL 65
P+ P PG +R++ SLGLLT KF+ LL E++DGVLDL AA+ L V QKRRIYDITNVL
Sbjct: 118 PKTPKSPGEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDV-QKRRIYDITNVL 176
Query: 66 EGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSI 125
EGI LI KK+KN+IQW G G + K +L E++EL EQ LDQ S
Sbjct: 177 EGIQLIRKKAKNNIQWVGRGMFEDPTR-PGKQQQLGQELKELMNTEQALDQLIQSCSLSF 235
Query: 126 RNVTEDVQNSCLAYVTHEDICRC--FAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHL 183
+++TED N LAYVT++DI F T++A++AP T LEVP + QI+L
Sbjct: 236 KHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPD----RTEDNLQIYL 291
Query: 184 KSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPN 243
KS GPIEV L +E V P P E+ L S S + P P AQ ++ P+
Sbjct: 292 KSTQGPIEVYLCPEE------VQEPDSPSEEPLPSTSTL-----CPSPDSAQPSSSTDPS 340
Query: 244 SPQLTPTAVPGSAEVQGMAGP 264
+ T ++VP A A P
Sbjct: 341 IMEPTASSVPAPAPTPQQAPP 361
Score = 48.9 bits (115), Expect = 8e-06
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 291 PTTLDTRPLQSSALLDSSSSSSSSSSSSSNS--NSSSSSGPNPSTSFEPIKADPTGV-LE 347
P + PL S++ L S S+ SSS+ S ++SS P P+ + + P+ V LE
Sbjct: 310 PDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLVPLE 369
Query: 348 LPKELSEIFDPTRECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFD 407
L E+ P + + L ++ +PL+ SP DY++ L+ EG+ DLFD
Sbjct: 370 ATDSLLELPHPLLQQTEDQFLSPTLACS--SPLISFSPSLDQDDYLWGLEAGEGISDLFD 427
>gi|134142813 E2F transcription factor 5 isoform 3 [Homo sapiens]
Length = 185
Score = 157 bits (397), Expect = 2e-38
Identities = 111/284 (39%), Positives = 139/284 (48%), Gaps = 102/284 (35%)
Query: 130 EDVQNSCLAYVTHEDICRCFAGDTLLAIRAPSGTSLEVPIPE-GLNGQKKYQIHLKSVSG 188
+D N+ +YVTHEDIC CF GDTLLAI+APSGT LEVPIPE G NGQKKYQI+LKS SG
Sbjct: 2 DDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSG 61
Query: 189 PIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLT 248
PI VLL+NKE+ SS PV PVP PP + ++P+S LT
Sbjct: 62 PIHVLLINKESSSSKPVVFPVP---------------PP---------DDLTQPSSQSLT 97
Query: 249 PTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSS 308
P T K S +LP + ++ LQ ++ D S
Sbjct: 98 PV-------------------------TPQKSSMATQNLPEQHVSERSQALQQTSATDIS 132
Query: 309 SSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELL 368
S+ S +S +++
Sbjct: 133 SAGS--------------------------------------------------ISGDII 142
Query: 369 EELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLN 412
+ELMSS+VF PLLRLSP P D DY +NLD++EGVCDLFDV +LN
Sbjct: 143 DELMSSDVF-PLLRLSPTPAD-DYNFNLDDNEGVCDLFDVQILN 184
>gi|4503433 E2F transcription factor 3 [Homo sapiens]
Length = 465
Score = 155 bits (393), Expect = 5e-38
Identities = 105/261 (40%), Positives = 145/261 (55%), Gaps = 32/261 (12%)
Query: 6 PQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVL 65
P+ P P +R++ SLGLLT KF+ LL ++ DGVLDL AA+ L V QKRRIYDITNVL
Sbjct: 167 PKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKV-QKRRIYDITNVL 225
Query: 66 EGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIE---LKAEIEELQQREQELDQHKVWVQ 122
EGI LI+KKSKN++QW GC+ E L + L E+ EL Q E++LD+
Sbjct: 226 EGIHLIKKKSKNNVQWM----GCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT 281
Query: 123 QSIRNVTEDVQNSCLAYVTHEDICRC--FAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQ 180
++ +TED +N LAYVT++DI + T++ ++AP T LEVP + + Q
Sbjct: 282 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVP-----DSIESLQ 336
Query: 181 IHLKSVSGPIEVLLVNKEAWSSPPVA---------VPVPPPEDLLQSPS-------AVST 224
IHL S GPIEV L +E + P+ +P P +DL + S ++
Sbjct: 337 IHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGN 396
Query: 225 PPPLPKPA-LAQSQEASRPNS 244
PL PA L Q E P++
Sbjct: 397 LSPLASPANLLQQTEDQIPSN 417
Score = 38.1 bits (87), Expect = 0.015
Identities = 21/95 (22%), Positives = 42/95 (44%)
Query: 313 SSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEELM 372
+ + S +N+ +G P + + + + +G + + + + E+ +
Sbjct: 355 TETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQI 414
Query: 373 SSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFD 407
S + P + L PP DY+ +L E EG+ DLFD
Sbjct: 415 PSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFD 449
>gi|12669911 E2F transcription factor 1 [Homo sapiens]
Length = 437
Score = 137 bits (345), Expect = 2e-32
Identities = 129/398 (32%), Positives = 172/398 (43%), Gaps = 95/398 (23%)
Query: 12 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLI 71
PG SR+E SL L T +F+ LL + DGV+DL AA+ L V QKRRIYDITNVLEGI LI
Sbjct: 122 PGEKSRYETSLNLTTKRFLELLSHSADGVVDLNWAAEVLKV-QKRRIYDITNVLEGIQLI 180
Query: 72 EKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTED 131
KKSKN IQW G T + +L L ++ +LQ+ EQ+LD +R ++ED
Sbjct: 181 AKKSKNHIQWLG---SHTTVGVGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 237
Query: 132 VQNSCLAYVTHEDICRCF--AGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHLKSVSGP 189
+ LAYVT +D+ A ++ I+AP T L + ++ + +QI LKS GP
Sbjct: 238 TDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQL-----QAVDSSENFQISLKSKQGP 292
Query: 190 IEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTP 249
I+V L PE+ + S TP SQE + + T
Sbjct: 293 IDVFLC----------------PEETVGGISPGKTP----------SQEVTSEEENRATD 326
Query: 250 TAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSS 309
+A VS P + P++L T P QS L+
Sbjct: 327 SAT----------------IVSPPPSSP-------------PSSLTTDPSQSLLSLEQEP 357
Query: 310 SSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLE 369
S S + P+ D L L E RE S L E
Sbjct: 358 LLSRMGSLRA-----------------PVDEDRLSPLVAADSLLE---HVREDFSGLLPE 397
Query: 370 ELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFD 407
E +S LSPP DY + L+E EG+ DLFD
Sbjct: 398 EFIS---------LSPPHEALDYHFGLEEGEGIRDLFD 426
>gi|109637795 E2F transcription factor 6 [Homo sapiens]
Length = 281
Score = 122 bits (306), Expect = 6e-28
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 17 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 76
R + SL LT KF+ L++ A G+LDL A L VR KRR+YDITNVL+GI L+EKKSK
Sbjct: 63 RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVR-KRRVYDITNVLDGIDLVEKKSK 121
Query: 77 NSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSC 136
N I+W +G + + +L+ E+ +L E LD+ Q + +T+D +N
Sbjct: 122 NHIRW--IGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENER 179
Query: 137 LAYVTHEDI--CRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHLKSVSGPIEVLL 194
LAYVT++DI + F ++A++AP+ T L+VP P + +H++S +GPI+V L
Sbjct: 180 LAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPR----EDSITVHIRSTNGPIDVYL 235
Query: 195 VNKE 198
E
Sbjct: 236 CEVE 239
>gi|145580626 E2F transcription factor 7 [Homo sapiens]
Length = 911
Score = 55.5 bits (132), Expect = 9e-08
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 15 PSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLI 71
PSR +KSLGLL KF++ ++ D +AV ++RRIYDI NVLE + L+
Sbjct: 140 PSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLGVERRRIYDIVNVLESLHLV 199
Query: 72 EKKSKNSIQWKGVGPGCNTREIADKLIE---LKAEIEELQQREQELDQHK 118
+ +KN W G T +L E + ++ LQQ+E +L +K
Sbjct: 200 SRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYLQQKELDLIDYK 249
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 10 PPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQK------------RR 57
P SR +KSL +++ KFV L +K ++ L +AA L + RR
Sbjct: 275 PSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRR 334
Query: 58 IYDITNVLEGIGLI-------EKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQR 110
+YDI NVL + LI E+ K + +W +GP + ++L+++ A + +R
Sbjct: 335 LYDIANVLTSLALIKKVHVTEERGRKPAFKW--IGP-VDFSSSDEELVDVSASVLPELKR 391
Query: 111 E 111
E
Sbjct: 392 E 392
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 55.5 bits (132), Expect = 9e-08
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 41/160 (25%)
Query: 187 SGPIEVLLVNKEAWSSPP------VAVPVPP--PEDLLQSPSAVSTPPPLPKPALAQSQE 238
SG + LL+ + S PP VA P PP P L +PS+ ++P P P P S
Sbjct: 757 SGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPL---SNA 813
Query: 239 ASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
++ P L+PT P + + P + + PG PT
Sbjct: 814 TAQSPLPILSPTVSPSPSPIP----PVEPLMSAASPGP--------------PT------ 849
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPI 338
L SSSSSSSSSSS S+S+SSSS P P ++ +
Sbjct: 850 ------LSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSV 883
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 209 VPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEI 268
V P LQ+PS S P P L + +S P P + A P + + PA
Sbjct: 743 VCPSSPALQTPSLSSGQLP---PLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSS 799
Query: 269 TVSGGPGTDSKDSGELSS-LPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSS 327
+ S P + S LP+ T+ P + S++S + S+S+SSSSS
Sbjct: 800 SASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSS 859
Query: 328 GPNPSTSFEPIKADP 342
+ S+S P
Sbjct: 860 SSSFSSSSSSSSPSP 874
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 55.5 bits (132), Expect = 9e-08
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 41/160 (25%)
Query: 187 SGPIEVLLVNKEAWSSPP------VAVPVPP--PEDLLQSPSAVSTPPPLPKPALAQSQE 238
SG + LL+ + S PP VA P PP P L +PS+ ++P P P P S
Sbjct: 958 SGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPL---SNA 1014
Query: 239 ASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
++ P L+PT P + + P + + PG PT
Sbjct: 1015 TAQSPLPILSPTVSPSPSPIP----PVEPLMSAASPGP--------------PT------ 1050
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPI 338
L SSSSSSSSSSS S+S+SSSS P P ++ +
Sbjct: 1051 ------LSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSV 1084
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 209 VPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEI 268
V P LQ+PS S P P L + +S P P + A P + + PA
Sbjct: 944 VCPSSPALQTPSLSSGQLP---PLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSS 1000
Query: 269 TVSGGPGTDSKDSGELSS-LPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSS 327
+ S P + S LP+ T+ P + S++S + S+S+SSSSS
Sbjct: 1001 SASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSS 1060
Query: 328 GPNPSTSFEPIKADP 342
+ S+S P
Sbjct: 1061 SSSFSSSSSSSSPSP 1075
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 55.5 bits (132), Expect = 9e-08
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 41/160 (25%)
Query: 187 SGPIEVLLVNKEAWSSPP------VAVPVPP--PEDLLQSPSAVSTPPPLPKPALAQSQE 238
SG + LL+ + S PP VA P PP P L +PS+ ++P P P P S
Sbjct: 958 SGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPL---SNA 1014
Query: 239 ASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
++ P L+PT P + + P + + PG PT
Sbjct: 1015 TAQSPLPILSPTVSPSPSPIP----PVEPLMSAASPGP--------------PT------ 1050
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPI 338
L SSSSSSSSSSS S+S+SSSS P P ++ +
Sbjct: 1051 ------LSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSV 1084
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 209 VPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEI 268
V P LQ+PS S P P L + +S P P + A P + + PA
Sbjct: 944 VCPSSPALQTPSLSSGQLP---PLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSS 1000
Query: 269 TVSGGPGTDSKDSGELSS-LPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSS 327
+ S P + S LP+ T+ P + S++S + S+S+SSSSS
Sbjct: 1001 SASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSS 1060
Query: 328 GPNPSTSFEPIKADP 342
+ S+S P
Sbjct: 1061 SSSFSSSSSSSSPSP 1075
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 55.5 bits (132), Expect = 9e-08
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 17/202 (8%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPK------PALAQSQEASRPNSPQLTPTAVPGSA 256
P V PP Q PSA++ P + + + S +S +S + ++ S+
Sbjct: 2502 PHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561
Query: 257 EVQGMAGPAA-EITVSGGPG-TDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSS 314
+ +G + P E+ + P T + P PT + SS+ SSSSSSSS
Sbjct: 2562 DSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSS 2621
Query: 315 SSSSSNSNSSSSSGPNPSTSFEPIKADPT----GVLELPKELSEIFDPTRECMSSELLEE 370
SSSSS+S+SSSSS + S+S + P+ G LPK S P E S +
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 2681
Query: 371 LMS-----SEVFAPLLRLSPPP 387
+ S S ++P+ R P P
Sbjct: 2682 IDSLRDSRSLSYSPVERRRPSP 2703
Score = 37.0 bits (84), Expect = 0.033
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 161 SGTSLEVPIPEGLNGQKKYQIHLKSVSGPIEVLLVNKEAWSSPPV-AVPVPPPEDLLQSP 219
S T E P P L ++ + P+ VN + +SP P PE L QS
Sbjct: 357 SSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSS 416
Query: 220 SAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGS 255
S+ S+PP P+P +S P SP+ P PGS
Sbjct: 417 SSESSPPS-PQPTKVSRHASSSPESPK--PAPAPGS 449
Score = 32.7 bits (73), Expect = 0.62
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 210 PPPEDLLQSPS-----AVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGP 264
P +D+ ++PS S+P P P + + S P+SP+L + E G
Sbjct: 1464 PGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRS-PSSPELNNKCLTPQRERSGSESS 1522
Query: 265 AAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSS------SSSSSSS 318
+ TV+ P SG L + P+ +S + DS + + S S SS
Sbjct: 1523 VDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSS 1582
Query: 319 SNSNSSSSSGPNPSTS 334
+S S P S S
Sbjct: 1583 PEVDSKSRLSPRRSRS 1598
Score = 29.3 bits (64), Expect = 6.8
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 181 IHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEAS 240
++L P + ++ +PP A P Q+P++ + P A A A
Sbjct: 2295 VNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPVNIAG 2354
Query: 241 RPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGP-GTDSKDSGELSSLPLGPTTLDTRPL 299
+ L P ++ + ++G A +T P + SG S P LD
Sbjct: 2355 SRTAAALAPASLTSARMAPALSG--ANLTSPRVPLSAYERVSGRTS-----PPLLD---- 2403
Query: 300 QSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKAD 341
++ + S+ S S +S + SS G PS S P D
Sbjct: 2404 RARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQD 2445
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVST-----PPPLPKPALAQSQEASRPNSPQLTPTAVPGS 255
S P P DL Q P T P P A A+ A S + + S
Sbjct: 2511 SEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSS 2570
Query: 256 AEVQGMAGPAAE------ITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSS 309
+ +G E GG GT ++ SS P + + SS+ SSS
Sbjct: 2571 SSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSS 2630
Query: 310 SSSSSSSSSSNSNSSSSSGPNPSTS 334
SSSSSSSSSS+S+SSSSS + S+S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSS 2655
Score = 43.5 bits (101), Expect = 4e-04
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 255 SAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSS 314
SA A PA+ + S + S S SS ++ + SS+ SSSSSSSS
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662
Query: 315 SSSSSNSNSSSSSGPNPSTSFEPIKADPTG 344
SSSSS+S+S++ + S+ E A G
Sbjct: 2663 SSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692
Score = 38.1 bits (87), Expect = 0.015
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 255 SAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSS 314
S+ A ++ + S + S S SS ++ + SS+ SSSSSSSS
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 315 SSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSE 354
SSSSS++ SS + + A P+ LP + ++
Sbjct: 2666 SSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATK 2705
Score = 30.8 bits (68), Expect = 2.3
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 251 AVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSS 310
A P S+ + ++ + S + S S SS ++ + SS+ SSSS
Sbjct: 2610 ASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Query: 311 SSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPT 343
SS++ SS S S + P P+ A PT
Sbjct: 2670 SSTTDEDSSCS-SDDEAAPAPTAGPSAQAALPT 2701
>gi|38505226 E2F family member 8 [Homo sapiens]
Length = 867
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 15 PSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLI 71
PSR EKSLGLL KF++ + ++ + D +A ++RRIYDI NVLE + ++
Sbjct: 111 PSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMV 170
Query: 72 EKKSKNSIQWKG 83
+ +KN W G
Sbjct: 171 SRLAKNRYTWHG 182
Score = 41.2 bits (95), Expect = 0.002
Identities = 76/342 (22%), Positives = 126/342 (36%), Gaps = 44/342 (12%)
Query: 16 SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQK-------------RRIYDIT 62
SR +KSL +++ KFV L + ++ L++AA L RR+YDI
Sbjct: 260 SRKDKSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIA 319
Query: 63 NVLEGIGLI-------EKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELD 115
NVL + LI E+ K + +W G NT + +I E+++ +E
Sbjct: 320 NVLSSLDLIKKVHVTEERGRKPAFKWTGPEISPNTSG-SSPVIHFTPSDLEVRRSSKENC 378
Query: 116 QHKVWVQQSIRNVTEDVQNSCLAYVTHEDICRC-FAGDTLLAIRAPSGTSLEVPIPE--- 171
++ + N T L D + A + + + P P
Sbjct: 379 AKNLFSTRGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIKTNKAESSQNSAPFPSKMA 438
Query: 172 GLNGQKKYQIHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKP 231
L K Q+ +S +V + + PVA P+ PP + +A S PL
Sbjct: 439 QLAAICKMQLEEQSSESRQKVKVQLARSGPCKPVA-PLDPPVNAEMELTAPSLIQPLGMV 497
Query: 232 ALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGP 291
L S +S P + P A G + + A +V+ G L P
Sbjct: 498 PLIPSPLSSA--VPLILPQAPSGPSYAIYLQPTQAHQSVTPPQG-------------LSP 542
Query: 292 TTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPST 333
T T SS S S+ +++ ++N S +S+ P +
Sbjct: 543 TVCTT---HSSKATGSKDSTDATTEKAANDTSKASASTRPGS 581
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQ---SQEASRPNSPQLTPTAVPGSAE 257
++PP+ VP PP SPSA TPPP P LA S P SP ++P+A P
Sbjct: 700 AAPPLQVPPSPPASPPMSPSA--TPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRV 757
Query: 258 VQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSS 317
+A P ++ S P S P P L T PLQ+ +S + S
Sbjct: 758 PPLLAAPPLQVPPS--PPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSP 815
Query: 318 SSNSNSSSSSGPNPSTSFEPIKADPTGVLELP 349
S++ S + P P P+ A P +L++P
Sbjct: 816 SASLPMSPLATPPPQA--PPVLAAP--LLQVP 843
Score = 47.4 bits (111), Expect = 2e-05
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 202 SPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGM 261
+PP + PPPE +PS+++TPPP PALA P SP L+P A P +
Sbjct: 571 APPSPLTTPPPE----TPSSIATPPPQAPPALASPPLQGLP-SPPLSPLATPPPQAPPXL 625
Query: 262 AGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNS 321
A P + S P S + P P L LQ+ S + S ++
Sbjct: 626 ALPPLQAPPS--PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASP 683
Query: 322 NSSSSSGP----NPSTSFEPIKADPT 343
S S+ P PS + P++ P+
Sbjct: 684 PVSPSATPPSQAPPSLAAPPLQVPPS 709
Score = 47.0 bits (110), Expect = 3e-05
Identities = 54/191 (28%), Positives = 74/191 (38%), Gaps = 19/191 (9%)
Query: 202 SPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQ---SQEASRPNSPQLTPTAVPGSAEV 258
SPPV P PP SPSA TPP P+LA S P SP ++P+A P
Sbjct: 670 SPPVQAPFSPPASPPVSPSA--TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 259 QGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSS 318
+A P ++ S P S + P P L PLQ S +S
Sbjct: 728 PPLAAPPLQVPPS--PPASPPMSPSATPPPRVPPLLAAPPLQ-------VPPSPPASLPM 778
Query: 319 SNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEELMSSE--V 376
S P P+ + P++A P+ P + F P+ S L + +
Sbjct: 779 SPLAKPPPQAP-PALATPPLQALPSPPASFPGQAP--FSPSASLPMSPLATPPPQAPPVL 835
Query: 377 FAPLLRLSPPP 387
APLL++ P P
Sbjct: 836 AAPLLQVPPSP 846
Score = 45.1 bits (105), Expect = 1e-04
Identities = 49/167 (29%), Positives = 64/167 (38%), Gaps = 32/167 (19%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQ-------------------SQEASR 241
++PP+ VP PP L SP A PPP PALA S AS
Sbjct: 762 AAPPLQVPPSPPASLPMSPLA--KPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASL 819
Query: 242 PNSPQLTP----TAVPGSAEVQGMAGPAAEITVSG-----GPGTDSKDSGELSSLPL--G 290
P SP TP V + +Q P A T+ PG D+ SG +L L G
Sbjct: 820 PMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPG 879
Query: 291 PTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEP 337
P +R S+ + SSS++S+ SGP + P
Sbjct: 880 PPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASP 926
Score = 44.7 bits (104), Expect = 2e-04
Identities = 71/255 (27%), Positives = 100/255 (39%), Gaps = 32/255 (12%)
Query: 158 RAPSGTSLEVPIPEGLNGQKKYQIH--LKSVSGPIEVLLVNKEAWSSPP--VAVPVPPPE 213
RAP+ S P P+GL + Q+ K + + L + A SP A PVPPP+
Sbjct: 264 RAPAHPSQ--PKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPD 321
Query: 214 D--------LLQSPSAVSTPPPL--PKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAG 263
+ L SP ++TP PL P P+ S + + P+ P P+ P S M
Sbjct: 322 NAATPLPATLPPSP-PLATPLPLAPPSPSAPPSLQ-TLPSPPATPPSQAPPSMTTPPMQA 379
Query: 264 PAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSS--SSSSNS 321
P + T+ P S SL P+ L LQ++ L S + ++ S + S
Sbjct: 380 PPSLQTI---PPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQ 436
Query: 322 NSSSSSGPNPSTSFEPIKADPTGVLELPKE--LSEIFDPTRECMSSEL-------LEELM 372
+S + P+ S P L LP L P +SS L L L
Sbjct: 437 TQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLA 496
Query: 373 SSEVFAPLLRLSPPP 387
S APL L PP
Sbjct: 497 SHSPQAPLSSLIMPP 511
Score = 34.7 bits (78), Expect = 0.16
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 29/169 (17%)
Query: 203 PPVAVPV--PPPEDLLQSP--SAVSTPPPLPKPALA-------QSQEASRPNSPQLTPT- 250
PP A P PP L SP S ++TPPP P LA S AS P SP TP+
Sbjct: 591 PPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSP 650
Query: 251 ---------------AVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPL--GPTT 293
+ P S VQ P A VS S+ L++ PL P+
Sbjct: 651 QAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSP 710
Query: 294 LDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADP 342
+ P+ SA + ++ S +S P ++ P + P
Sbjct: 711 PASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPP 759
Score = 32.7 bits (73), Expect = 0.62
Identities = 49/208 (23%), Positives = 75/208 (36%), Gaps = 30/208 (14%)
Query: 204 PVAVPVPPPEDLLQSPSA----------------VSTPPPLPKPALA---QSQEASRPNS 244
P ++ PPP Q+P A ++TPPP P LA S P S
Sbjct: 584 PSSIATPPP----QAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPAS 639
Query: 245 PQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTD-SKDSGELSSLPLGPTTLDTRPLQSSA 303
P L+P A P +A + S P +S P+ P+ T P Q+
Sbjct: 640 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSA--TPPSQAPP 697
Query: 304 LLDSSSSSSSSSSSSSNSNSSSSSGP---NPSTSFEPIKADPTGVLELPKELSEIFDP-T 359
L + S +S S S++ P P + P++ P+ P S P
Sbjct: 698 SLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRV 757
Query: 360 RECMSSELLEELMSSEVFAPLLRLSPPP 387
+++ L+ S P+ L+ PP
Sbjct: 758 PPLLAAPPLQVPPSPPASLPMSPLAKPP 785
Score = 31.6 bits (70), Expect = 1.4
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 202 SPPVAVPVPPPEDL-------LQSPSAVSTPPPLPKPALAQSQEASRPNSPQLT-PTAVP 253
+PP ++ PP E+L LQ+ SA T P L P P SP T P P
Sbjct: 525 TPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETP 584
Query: 254 GSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSL----PLGPTTLDTRPLQS 301
S P A P S LS L P P L PLQ+
Sbjct: 585 SSIATPPPQAPPA----LASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQA 632
Score = 29.3 bits (64), Expect = 6.8
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 33/189 (17%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPK-PALAQS--QEASRP-NSPQLTPTAVPGSAEV 258
PP+ LQ+P A T PPL P+LA Q AS P +P L P +
Sbjct: 510 PPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPL 569
Query: 259 QGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSS 318
Q P + P P+++ T P Q+ L S S
Sbjct: 570 QAPPSPLT------------------TPPPETPSSIATPPPQAPPALASPPLQGLPSPPL 611
Query: 319 SNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEELMSSEVFA 378
S + P P + P++A P+ P LS + P+ + ++ + L +
Sbjct: 612 SPLATPPPQAP-PXLALPPLQAPPSPPASPP--LSPLATPSPQAPNALAVHLLQAP---- 664
Query: 379 PLLRLSPPP 387
SPPP
Sbjct: 665 ----FSPPP 669
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 204 PVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAG 263
P A P P +P A + PP P ++P P + P+ G G +
Sbjct: 355 PKASPAPSHNSGTPAPYAQAVAPPAPS-----GPSTTQPRPPSVQPSGGGGGGSGGGGSS 409
Query: 264 PAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNS 323
++ + GG G + G T+ + S A + SSS +++SS +
Sbjct: 410 SSSNSSAGGGAGKQN-----------GATSYSSVVADSPAEVALSSSGGNNASSQALGPP 458
Query: 324 SSSSGPNPSTSFEPIKADPTG 344
S P PSTS EP A PTG
Sbjct: 459 SGPHNPPPSTSKEPSAAAPTG 479
Score = 34.3 bits (77), Expect = 0.21
Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 19/177 (10%)
Query: 234 AQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTT 293
A SQ P+ P P P +++ A P V+ G G +S L LP+ P +
Sbjct: 450 ASSQALGPPSGPHNPP---PSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPS 506
Query: 294 LDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELS 353
T + D+ ++ + + S + P P +S + + E S
Sbjct: 507 SPT-----PSFSDAKAAGALLNGPPQFSTAPEIKAPEPLSSLK-------SMAERAAISS 554
Query: 354 EIFDPTRECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPV 410
I DP +E +++ S AP PP + N+ S GVC L VP+
Sbjct: 555 GIEDPVPTLHLTE--RDIILSSTSAPPASAQPPLQLSE--VNIPLSLGVCPLGPVPL 607
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 287 LPLGPTT--LDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTG 344
LPL P T P ++A SSSSSSSSSSSSS+++SSSSS + P + P
Sbjct: 65 LPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPR 124
Query: 345 VLELP 349
VLELP
Sbjct: 125 VLELP 129
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 208 PVPPPEDLLQ--SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPA 265
P PPPE SP+ +P PA+A + E ++ +P+ T + V G+ G
Sbjct: 523 PPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGG 582
Query: 266 AEITVSG-GP 274
T +G GP
Sbjct: 583 GPPTGAGRGP 592
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 287 LPLGPTT--LDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTG 344
LPL P T P ++A SSSSSSSSSSSSS+++SSSSS + P + P
Sbjct: 65 LPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPR 124
Query: 345 VLELP 349
VLELP
Sbjct: 125 VLELP 129
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 208 PVPPPEDLLQ--SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPA 265
P PPPE SP+ +P PA+A + E ++ +P+ T + V G+ G
Sbjct: 523 PPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGG 582
Query: 266 AEITVSG-GP 274
T +G GP
Sbjct: 583 GPPTGAGRGP 592
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 48.9 bits (115), Expect = 8e-06
Identities = 62/238 (26%), Positives = 92/238 (38%), Gaps = 48/238 (20%)
Query: 186 VSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSP 245
+S P + ++ SPP +PP +P TPPP P AQ+ + P+SP
Sbjct: 2468 ISAPNPITILPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVT-PSSP 2526
Query: 246 QLT-PTAVPGSAEVQGM---AGPAAEITVSGGPGTDSKD-----SGELSSLPLG------ 290
L P +VP SA V + P AE+ +S + S E SSL L
Sbjct: 2527 LLLGPPSVPISASVTNLPLGLRPEAELCAQALASPESLELASVASSETSSLSLVPPKDLL 2586
Query: 291 PTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPN----------PSTSFEPIKA 340
P ++ P+ L + S+ S + + S N P+ P P+
Sbjct: 2587 PVAVEILPVSEKNLSLTPSAPSLTLEAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCV 2646
Query: 341 DPTGVLELP-------------------KELSEIFDPTRECMSSELLEELMSSEVFAP 379
+ LELP +EL+E PT S E +EL+++EV AP
Sbjct: 2647 SESNGLELPPSAASDEPLQEPLEADRTSEELTEAKTPT---SSPEKPQELVTAEVAAP 2701
Score = 41.6 bits (96), Expect = 0.001
Identities = 71/273 (26%), Positives = 110/273 (40%), Gaps = 23/273 (8%)
Query: 101 KAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYVTHEDICRCFA---GDTLLAI 157
K + Q R+ + Q + + + V+ Q+ ++ H + + A G T +++
Sbjct: 1215 KLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQPAHVALIQAVAPTPGPTPVSV 1274
Query: 158 RAPSGTSLEVPIPEGLN-GQKKYQIHLKSVSGPIEVLLVNKEAWSS-----PPVA-VPVP 210
PS T P P GL+ Q+ V+ V +V ++A PP+A P P
Sbjct: 1275 -LPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIVVRQAPRDGLTPVPPLAPAPRP 1333
Query: 211 PPEDL--LQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEI 268
P L + +P TP LP P L ++ +P TPT V ++ P
Sbjct: 1334 PSSGLPAVLNPRPTLTPGRLPTPTLGTAR------APMPTPTLVRPLLKLVHSPSPEVSA 1387
Query: 269 TVSG-GPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSS 327
+ G P T S SSLP GP + SS L SS+ S SSS S ++
Sbjct: 1388 SAPGAAPLTISSPLHVPSSLP-GPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTT 1446
Query: 328 GPNPSTS--FEPIKADPTGVLELPKELSEIFDP 358
P P+++ PI A T P L+ + P
Sbjct: 1447 LPAPASAPLTIPISAPLTVSASGPALLTSVTPP 1479
Score = 39.3 bits (90), Expect = 0.007
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 192 VLLVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLP-------KPALAQSQEASRPNS 244
V++VN PV V PP +L P+ P LP PA ASRP
Sbjct: 1009 VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPG 1068
Query: 245 PQLTPTAVPGSAEV-QGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQ-SS 302
P L P P S + Q + P ++ + P T + L P P L P SS
Sbjct: 1069 PVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTL---SLKPTPPAPVRLSPAPPPGSS 1125
Query: 303 ALLD--------SSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELP 349
+LL + ++++++S++ + +++++ P P+ + + + P LP
Sbjct: 1126 SLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLP 1180
Score = 38.1 bits (87), Expect = 0.015
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 7/175 (4%)
Query: 163 TSLEVPIPEGLNGQKKYQIHLKSVSGPIEVLLVNKEAWSSPPVAVPVPPPEDLLQSPSAV 222
++L P P N L S + L ++P A+ P P L +P V
Sbjct: 1553 SALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPL-APLPV 1611
Query: 223 STPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSG 282
P P P LA SQ P + P++ PG++ PA ++ +
Sbjct: 1612 LAPSPGAAPVLASSQTPV----PVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAP 1667
Query: 283 ELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEP 337
S LP P + T L + AL + SS S + S + + P + S P
Sbjct: 1668 VPSPLP-SPASTQTLAL-APALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTP 1720
Score = 38.1 bits (87), Expect = 0.015
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 6/151 (3%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQG 260
+S VPV P + A ++P P P P LA S + +P +P P S +
Sbjct: 1623 ASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLA 1682
Query: 261 MAGPAAEITVSGGPGTDSKDSGELSSLPLGP---TTLDTRPLQSSALLDSSSSSSSSSSS 317
+A PA T+ G + + G + P GP TL P S + + S +
Sbjct: 1683 LA-PALAPTLGGSSPSQTLSLG--TGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPP 1739
Query: 318 SSNSNSSSSSGPNPSTSFEPIKADPTGVLEL 348
+ + S + P P+ P L L
Sbjct: 1740 LGPTQTLSLAPAPPLAPASPVGPAPAHTLTL 1770
Score = 30.4 bits (67), Expect = 3.1
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 21/130 (16%)
Query: 204 PVAVPVPPPEDLLQSPSAVSTPPPLPKPA--LAQSQEASRPNSPQLTPTAVPGSAEVQGM 261
P PV P L SP S P P P A LA + AS+ + L P A P +A +
Sbjct: 1543 PACSPVLVPASALASPFP-SAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPS 1601
Query: 262 AGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNS 321
P L+ LP+ + P+ +S+ + SS+ +S +
Sbjct: 1602 PAP------------------PLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLA 1643
Query: 322 NSSSSSGPNP 331
++S P P
Sbjct: 1644 SASPVPAPTP 1653
Score = 28.9 bits (63), Expect = 8.9
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 31/156 (19%)
Query: 211 PPEDLLQSPSAVSTPPPL------PKPALAQSQEASRPNSPQLTPTAVPGSAEVQ----- 259
P + L +P++ P P P P L +Q S +P L P + G A
Sbjct: 1712 PTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLA 1771
Query: 260 ------GMAGPAAEITVSGGPG-TDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSS- 311
+ PA+ T++ P + +L L P + + Q+S+L+ S+S +
Sbjct: 1772 PASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAA 1831
Query: 312 ------------SSSSSSSSNSNSSSSSGPNPSTSF 335
S + S S P+ +TSF
Sbjct: 1832 PLPVTMVSRLPVSKDEPDTLTLRSGPPSPPSTATSF 1867
>gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo
sapiens]
Length = 389
Score = 47.8 bits (112), Expect = 2e-05
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 218 SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPG-- 275
+PS S P P +P L QS E S P++ Q G +Q + A T + P
Sbjct: 29 APSPGSAPVPGTQPPL-QSFEGS-PDAGQTVEVKPAGEQPLQPVLNAVAAGTPAPQPQPP 86
Query: 276 TDSKDSGELSSLP------LGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGP 329
+S G+ + P P +L+T S + S + S SSSSSS+S+SSSSS
Sbjct: 87 AESPACGDCVTSPGAAEPARAPDSLETSDSDSDS---DSETDSDSSSSSSSSSSSSSSSS 143
Query: 330 NPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEELMSSEVFAPLL 381
+ S P+ +D L++ KE T++ + LL EL S E +L
Sbjct: 144 SSCISLPPVLSDGDDDLQIEKENKNFPLKTKDEL---LLNELPSVEELTIIL 192
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 47.8 bits (112), Expect = 2e-05
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 218 SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPG-- 275
+PS S P P +P L QS E S P++ Q G +Q + A T + P
Sbjct: 29 APSPGSAPVPGTQPPL-QSFEGS-PDAGQTVEVKPAGEQPLQPVLNAVAAGTPAPQPQPP 86
Query: 276 TDSKDSGELSSLP------LGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGP 329
+S G+ + P P +L+T S + S + S SSSSSS+S+SSSSS
Sbjct: 87 AESPACGDCVTSPGAAEPARAPDSLETSDSDSDS---DSETDSDSSSSSSSSSSSSSSSS 143
Query: 330 NPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEELMSSEVFAPLL 381
+ S P+ +D L++ KE T++ + LL EL S E +L
Sbjct: 144 SSCISLPPVLSDGDDDLQIEKENKNFPLKTKDEL---LLNELPSVEELTIIL 192
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 46.6 bits (109), Expect = 4e-05
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPN------SPQLTPTAVPGSA 256
PP++ + SA S+P P P + RP + T T+ G
Sbjct: 18 PPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGG 77
Query: 257 EVQGMAGPAAEITVSGGPG--------------TDSKDSGELSSLPLGPTTLDTRPLQSS 302
G G GG G + G + G + P+ +S
Sbjct: 78 GGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAS 137
Query: 303 ALLDSSSSSSSSSSSSSNSNSSSSS---GPNPSTSFEPIKADPTGVLELPK 350
SSSSSSSSSSSSS+S+SSSSS GP P +P+ + P+ V P+
Sbjct: 138 TG-SSSSSSSSSSSSSSSSSSSSSSSSCGPLPG---KPVYSTPSPVENTPQ 184
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 46.6 bits (109), Expect = 4e-05
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPN------SPQLTPTAVPGSA 256
PP++ + SA S+P P P + RP + T T+ G
Sbjct: 18 PPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGG 77
Query: 257 EVQGMAGPAAEITVSGGPG--------------TDSKDSGELSSLPLGPTTLDTRPLQSS 302
G G GG G + G + G + P+ +S
Sbjct: 78 GGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAS 137
Query: 303 ALLDSSSSSSSSSSSSSNSNSSSSS---GPNPSTSFEPIKADPTGVLELPK 350
SSSSSSSSSSSSS+S+SSSSS GP P +P+ + P+ V P+
Sbjct: 138 TG-SSSSSSSSSSSSSSSSSSSSSSSSCGPLPG---KPVYSTPSPVENTPQ 184
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 46.6 bits (109), Expect = 4e-05
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPN------SPQLTPTAVPGSA 256
PP++ + SA S+P P P + RP + T T+ G
Sbjct: 18 PPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGG 77
Query: 257 EVQGMAGPAAEITVSGGPG--------------TDSKDSGELSSLPLGPTTLDTRPLQSS 302
G G GG G + G + G + P+ +S
Sbjct: 78 GGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAS 137
Query: 303 ALLDSSSSSSSSSSSSSNSNSSSSS---GPNPSTSFEPIKADPTGVLELPK 350
SSSSSSSSSSSSS+S+SSSSS GP P +P+ + P+ V P+
Sbjct: 138 TG-SSSSSSSSSSSSSSSSSSSSSSSSCGPLPG---KPVYSTPSPVENTPQ 184
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 46.6 bits (109), Expect = 4e-05
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 197 KEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEAS----RPNSPQLTPTAV 252
K A+ P +A+ E SP PPP P P + + A+ +P++ + ++
Sbjct: 248 KAAFKEPKMALKETKLEST--SPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSS 305
Query: 253 PGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSS 312
GS G + T S +D K + + SS ++ P ++ L+ S+S
Sbjct: 306 KGSRSAPG----TSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNS 361
Query: 313 -------SSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVL 346
S S+ SS SNSSSSS + + FEP + G L
Sbjct: 362 EDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPL 402
Score = 42.4 bits (98), Expect = 8e-04
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 22/161 (13%)
Query: 202 SPPVAVPVPPPEDLLQSPSAVST------PPPLPKPALAQSQEASRPNSPQLTPTAVPGS 255
+PP P+ L+ ST PPP P P A S+ + +SP+ + S
Sbjct: 244 APPPKAAFKEPKMALKETKLESTSPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKS 303
Query: 256 AEVQGMAGPAAEI-TVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLD-------- 306
+ + P T S +D K + + SS ++ P ++ L+
Sbjct: 304 SSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNSED 363
Query: 307 -------SSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKA 340
S+ SS S+SSSSS+S+S S P+ + S P+++
Sbjct: 364 EASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRS 404
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 46.6 bits (109), Expect = 4e-05
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 202 SPPVAVPVPPPEDLLQSP---------SAVSTPPPL--PKPALAQSQE---ASRPNSPQL 247
SPP P PPP P + +TPPP P P + + + P+ P
Sbjct: 1400 SPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPIS 1459
Query: 248 TPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDS 307
T T P + + T + P T + + ++ P PTT P S+ L
Sbjct: 1460 TTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPP 1519
Query: 308 SSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPT 359
+++ S +++++ +++ P +T P PT LP + PT
Sbjct: 1520 TTTPSPPTTTTTTPPPTTTPSPPTTTPITP----PTSTTTLPPTTTPSPPPT 1567
Score = 45.8 bits (107), Expect = 7e-05
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 27/142 (19%)
Query: 202 SPPVAVPVPPPEDLLQ---------SPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAV 252
SPP P+ PP P+ +TPPP P S + SP +T T
Sbjct: 1619 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP----SPPTTTTPSPPITTTTT 1674
Query: 253 PGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSS 312
P P++ IT + P T + + ++ P P T T P SS+++
Sbjct: 1675 PPPTTT-----PSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTP---------SSTTT 1720
Query: 313 SSSSSSSNSNSSSSSGPNPSTS 334
S ++ + S ++ P+P T+
Sbjct: 1721 PSPPPTTMTTPSPTTTPSPPTT 1742
Score = 44.7 bits (104), Expect = 2e-04
Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 17/189 (8%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSA--EV 258
S P PPP +PS +T P P + + P+ P T T P +
Sbjct: 1603 SPPTTTTTTPPP---TTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSP 1659
Query: 259 QGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSS 318
P+ IT + P + S +++ P PTT T P +++ SS +++
Sbjct: 1660 PTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTP-------SPTTTPSSPITTT 1712
Query: 319 SNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTREC--MSSELLEELMSSEV 376
+ +S+++ P P+T P PT P PT +++ L ++
Sbjct: 1713 TTPSSTTTPSPPPTTMTTP---SPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPT 1769
Query: 377 FAPLLRLSP 385
F+P +P
Sbjct: 1770 FSPFSTTTP 1778
Score = 42.7 bits (99), Expect = 6e-04
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 203 PPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRP--NSPQLTPTAVPGSAEVQG 260
PP P PP + P++ +T PP P+ + + P +P T P +
Sbjct: 1534 PPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITT 1593
Query: 261 MAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLD-TRPLQSSALLDSSSSSSSSSSSSS 319
P T + P T + + ++ P PTT T P ++ L +++ S +++++
Sbjct: 1594 TTPPP---TTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTT 1650
Query: 320 NSNSSSSSGPNPSTSFEPIKADPT 343
+++ S P +T PI T
Sbjct: 1651 PPPTTTPSPPTTTTPSPPITTTTT 1674
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLT-----PTAVPGS 255
++PP PP +P +TP P P S + P+ P T PT P
Sbjct: 1446 TTPPPTTTPSPPISTTTTPPPTTTPSP---PTTTPSPPTTTPSPPTTTTTTPPPTTTPSP 1502
Query: 256 AEVQGMAGPAAEITV----SGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSS 311
+ PA+ T+ + P T + + ++ P PTT P S+ L +++
Sbjct: 1503 PTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTP 1562
Query: 312 SSSSSSSSNSNSSSSSGPNPSTSFEP 337
S ++++ +++ P +T+ P
Sbjct: 1563 SPPPTTTTTPPPTTTPSPPTTTTPSP 1588
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 21/196 (10%)
Query: 201 SSPPVAVPVPPPEDLLQSPSAVSTPP----PLPKPALAQSQEASRPNSP-----QLTPTA 251
++PP PP P+ +PP P P S + P +P L PT
Sbjct: 1462 TTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTT 1521
Query: 252 VPGSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSS 311
P P T + P T + + S+ L PTT + P ++ +++
Sbjct: 1522 TPSPPTTTTTTPPP---TTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1578
Query: 312 SSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKELSEIFDPTRECMSSELLEEL 371
S ++++ + + +++ P P+T+ P PT P + PT ++
Sbjct: 1579 SPPTTTTPSPPTITTTTPPPTTTPSP----PTTTTTTPPPTTTPSPPTTTPITPP----- 1629
Query: 372 MSSEVFAPLLRLSPPP 387
S+ P SPPP
Sbjct: 1630 TSTTTLPPTTTPSPPP 1645
Score = 37.7 bits (86), Expect = 0.019
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 204 PVAVPVPPPEDLLQSPSA---VSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQG 260
P PP +P A S PPP E+S P + + T + + S +
Sbjct: 4190 PTGTQTGPPTHTSTAPIAELTTSNPPP----------ESSTPQTSRSTSSPLTESTTLLS 4239
Query: 261 MAGPAAEITVSGGPGTDSKDSGELSSLPLG-PTTLDTRPLQSSALLDSSSSSSSSSSSSS 319
PA E+T + P T + + L P + T P + ++ SSS+ + S+
Sbjct: 4240 TLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTV 4299
Query: 320 NSNSSSSSGPNPSTSFEPIKADPTGVLELPKEL 352
+ ++S+ P P+ P TG+ P +
Sbjct: 4300 QTTTTSAWTPTPTPLSTPSIIRTTGLRPYPSSV 4332
Score = 37.4 bits (85), Expect = 0.025
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 11/137 (8%)
Query: 204 PVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAG 263
P P+ + +P+ T P P + P TPT
Sbjct: 4150 PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTP-----TPTGTQTGPPTHTSTA 4204
Query: 264 PAAEITVSGGP---GTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSN 320
P AE+T S P T S L T L T P A+ +S++ S+ ++ +
Sbjct: 4205 PIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLP---PAIEMTSTAPPSTPTAPTT 4261
Query: 321 SNSSSSSGPNPSTSFEP 337
++ + P PST+ P
Sbjct: 4262 TSGGHTLSPPPSTTTSP 4278
Score = 36.2 bits (82), Expect = 0.056
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 31/159 (19%)
Query: 202 SPPVAVPVPPPEDLLQSP---------SAVSTPPPLPKPALAQSQEASRPNSPQLT---- 248
SPP P+ PP P + +TPPP P S P + +T
Sbjct: 1501 SPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTP--------SPPTTTPITPPTS 1552
Query: 249 -----PTAVPG-----SAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRP 298
PT P + P+ T + P T + + ++ P PTT T P
Sbjct: 1553 TTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTP 1612
Query: 299 LQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEP 337
++ +++ + +S++ +++ P P+T+ P
Sbjct: 1613 PPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTP 1651
Score = 34.3 bits (77), Expect = 0.21
Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 211 PPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITV 270
P + + +PS +T P P + + P+ P T T P + P+ IT
Sbjct: 1391 PMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTT------PSPPITT 1444
Query: 271 SGGPGTDSKDSGELS--------SLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSN 322
+ P + S +S + P PTT + P + + +++++ +++ S
Sbjct: 1445 TTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPT 1504
Query: 323 SSSSSGPNPSTSFEP--IKADPTGVLELPKELSEIFDPTRECMSSELLEELMSSEVFAPL 380
++ + P +T+ P + PT P + PT ++ S+ P
Sbjct: 1505 TTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP-----TSTTTLPPT 1559
Query: 381 LRLSPPP 387
SPPP
Sbjct: 1560 TTPSPPP 1566
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 46.6 bits (109), Expect = 4e-05
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 206 AVPVPPPEDLLQSPSAVSTPPPL----------PKPALAQSQEASRPNSPQLTPTAVPGS 255
A P PP + + S PPP P PAL AS + P L +PG
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASA-SPPGLGAQPLPGH 328
Query: 256 -----AEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSS 310
A QGM G + GP + SLP ++ P++ SSSS
Sbjct: 329 LPSPHAMGQGMGG------LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPY---SSSS 379
Query: 311 SSSSSSSSSNSNSSSSSGPNPSTSFEP 337
SSS+++SSS+S+SSSS+ P P++ P
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQALP 406
Score = 35.0 bits (79), Expect = 0.12
Identities = 56/222 (25%), Positives = 77/222 (34%), Gaps = 37/222 (16%)
Query: 194 LVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQS-----------QEASRP 242
L ++ WS P P PPP L + S P P P AQS +
Sbjct: 432 LPSQAVWSQGP---PPPPPYGRLLANSNAH-PGPFPPSTGAQSTAHPPVSTHHHHHQQQQ 487
Query: 243 NSPQLTPTAVPGSAEVQGMAGP----AAEITVSGG------PGTDSKDSGELSSLPLGPT 292
Q + G +GP A + GG P S G L P GP
Sbjct: 488 QQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPA 547
Query: 293 TLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKEL 352
L P S + + SSSSNS+SS+S G P + P + P+
Sbjct: 548 HLP--PPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQG--------PQGA 597
Query: 353 SEIFDPT-RECMSSELLEELMSSEVFAPL-LRLSPPPGDHDY 392
F P SS L ++++ +P + + PPG Y
Sbjct: 598 PYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPY 639
Score = 30.8 bits (68), Expect = 2.3
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 215 LLQSPSAVSTPPPL------PKPALAQSQEASRPNSPQLTPT---------------AVP 253
L Q P+ PPPL P + + EAS P +TPT A P
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPP 210
Query: 254 GSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSS 313
G+ P V GP K G SS+ GP P ++ + SSS +S
Sbjct: 211 GAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSVG-GPNGGKQHPPPTTPISVSSSGASG 269
Query: 314 S 314
+
Sbjct: 270 A 270
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 46.6 bits (109), Expect = 4e-05
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 206 AVPVPPPEDLLQSPSAVSTPPPL----------PKPALAQSQEASRPNSPQLTPTAVPGS 255
A P PP + + S PPP P PAL AS + P L +PG
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASA-SPPGLGAQPLPGH 328
Query: 256 -----AEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSS 310
A QGM G + GP + SLP ++ P++ SSSS
Sbjct: 329 LPSPHAMGQGMGG------LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPY---SSSS 379
Query: 311 SSSSSSSSSNSNSSSSSGPNPSTSFEP 337
SSS+++SSS+S+SSSS+ P P++ P
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQALP 406
Score = 35.0 bits (79), Expect = 0.12
Identities = 56/222 (25%), Positives = 77/222 (34%), Gaps = 37/222 (16%)
Query: 194 LVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQS-----------QEASRP 242
L ++ WS P P PPP L + S P P P AQS +
Sbjct: 432 LPSQAVWSQGP---PPPPPYGRLLANSNAH-PGPFPPSTGAQSTAHPPVSTHHHHHQQQQ 487
Query: 243 NSPQLTPTAVPGSAEVQGMAGP----AAEITVSGG------PGTDSKDSGELSSLPLGPT 292
Q + G +GP A + GG P S G L P GP
Sbjct: 488 QQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPA 547
Query: 293 TLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKADPTGVLELPKEL 352
L P S + + SSSSNS+SS+S G P + P + P+
Sbjct: 548 HLP--PPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQG--------PQGA 597
Query: 353 SEIFDPT-RECMSSELLEELMSSEVFAPL-LRLSPPPGDHDY 392
F P SS L ++++ +P + + PPG Y
Sbjct: 598 PYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPY 639
Score = 30.8 bits (68), Expect = 2.3
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 215 LLQSPSAVSTPPPL------PKPALAQSQEASRPNSPQLTPT---------------AVP 253
L Q P+ PPPL P + + EAS P +TPT A P
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPP 210
Query: 254 GSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSS 313
G+ P V GP K G SS+ GP P ++ + SSS +S
Sbjct: 211 GAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSVG-GPNGGKQHPPPTTPISVSSSGASG 269
Query: 314 S 314
+
Sbjct: 270 A 270
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 46.2 bits (108), Expect = 5e-05
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 6/151 (3%)
Query: 196 NKEAWSSPPVAVPV--PPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVP 253
N SS PV P P+D +P S P P + A + + P +P T A P
Sbjct: 144 NVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPP 203
Query: 254 -GSAEVQGMAGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSS 312
SA + A P + P + S E ++ P P+ PL SSA +++
Sbjct: 204 SSSAPPETTAAPPTPPATTPAPPSSSAPP-ETTAAPPTPSATTPAPLSSSA--PPETTAV 260
Query: 313 SSSSSSSNSNSSSSSGPNPSTSFEPIKADPT 343
+ S++ + SS+S P +T+ P + T
Sbjct: 261 PPTPSATTLDPSSASAPPETTAAPPTPSATT 291
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 11/159 (6%)
Query: 202 SPPVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVPGSAEVQGM 261
+P P PP +P + PP P +S P P P +
Sbjct: 171 TPSATTPAPPSSS---APPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPS 227
Query: 262 AGPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNS 321
+ E T + P T S + S P T P S+ LD SS+S+ ++++
Sbjct: 228 SSAPPETTAA--PPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPP 285
Query: 322 NSSSSSGPNPS------TSFEPIKADPTGVLELPKELSE 354
S+++ PS T+ PI + L + SE
Sbjct: 286 TPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSE 324
Score = 36.2 bits (82), Expect = 0.056
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 202 SPPVAVPVPPPEDLLQSPSAVSTPPPLPK---PALAQSQEASRPNSPQLTPTAV---PGS 255
+PP P PP +P + PP P PA S + TP+A P S
Sbjct: 217 TPPATTPAPPSSS---APPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSS 273
Query: 256 AEV---QGMAGPAAEITVSGGPGTDSKDSGELSSLPL-----GPTTLDTRPLQSSALLDS 307
A A P T P + + E ++ P+ PTTL ++SA
Sbjct: 274 ASAPPETTAAPPTPSATTPAPPSSPAPQ--ETTAAPITTPNSSPTTLAPDTSETSAAPTH 331
Query: 308 SSSSSSSSSSSSNSNSSSSSGPNPSTSF 335
+++S ++ +++ +S+ G N + F
Sbjct: 332 QTTTSVTTQTTTTKQPTSAPGQNKISRF 359
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,261,313
Number of Sequences: 37866
Number of extensions: 1143071
Number of successful extensions: 20859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 1034
Number of HSP's that attempted gapping in prelim test: 11100
Number of HSP's gapped (non-prelim): 6493
length of query: 413
length of database: 18,247,518
effective HSP length: 105
effective length of query: 308
effective length of database: 14,271,588
effective search space: 4395649104
effective search space used: 4395649104
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.