Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C2orf34 Sequence: fasta or formatted (323aa) NCBI GI: 13376109
Description:

hypothetical protein LOC79823

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         25           2
 C cysteine            3.7         12           1
 D aspartate           5.0         16           2
 E glutamate           7.4         24           3
 F phenylalanine       4.0         13           1
 G glycine             6.8         22           3
 H histidine           3.1         10           1
 I isoleucine          4.6         15           2
 K lysine              5.3         17           2
 L leucine            10.2         33           3
 M methionine          1.5          5           1
 N asparagine          5.6         18           2
 P proline             2.8          9           1
 Q glutamine           3.4         11           1
 R arginine            6.2         20           2
 S serine              6.2         20           2
 T threonine           5.0         16           2
 V valine              7.7         25           2
 W tryptophan          1.2          4           1
 Y tyrosine            2.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79823 
FAM86A                0.033   hypothetical protein LOC196483 isoform 2 
FAM86A                0.028   hypothetical protein LOC196483 isoform 1 
FAM86B2               0.024   PREDICTED: hypothetical protein LOC653333 
FAM119B               0.024   hypothetical protein LOC25895 isoform a 
FAM86B1               0.022   hypothetical protein LOC85002 
FAM86B2               0.017   hypothetical protein LOC653333 
C16orf68              0.014   hypothetical protein LOC79091 
FAM119A               0.014   hypothetical protein LOC151194 
FAM119A               0.014   hypothetical protein LOC151194 
EXTL3                 0.013   exostoses-like 3 
C17orf95              0.013   hypothetical protein LOC124512 
ATP2C2                0.008   ATPase, Ca++ transporting, type 2C, member 2 
C12orf72              0.006   hypothetical protein LOC254013 
C12orf72              0.006   hypothetical protein LOC254013 
C12orf72              0.006   hypothetical protein LOC254013 
GCC2                  0.005   GRIP and coiled-coil domain-containing 2 
PCNT                  0.005   pericentrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press