Guide to the Human Genome
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Name: LOC100132339 Sequence: fasta or formatted (349aa) NCBI GI: 239745563
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {349aa} PREDICTED: hypothetical protein
alt mRNA {349aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         35           2
 C cysteine            0.6          2           2
 D aspartate           4.3         15           2
 E glutamate           5.7         20           1
 F phenylalanine       2.0          7           1
 G glycine            10.9         38           2
 H histidine           1.1          4           1
 I isoleucine          2.6          9           1
 K lysine              3.7         13           2
 L leucine            10.3         36           3
 M methionine          0.6          2           1
 N asparagine          1.4          5           1
 P proline            10.0         35           2
 Q glutamine           3.7         13           1
 R arginine           10.9         38           2
 S serine             10.0         35           2
 T threonine           5.4         19           2
 V valine              3.2         11           2
 W tryptophan          2.3          8           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132339          1.000   PREDICTED: hypothetical protein 
LOC100132339          1.000   PREDICTED: hypothetical protein 
LOC100291147          0.015   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.015   PREDICTED: hypothetical protein XP_002344188 
LOC100291136          0.013   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.013   PREDICTED: hypothetical protein XP_002343480 
RAB11FIP1             0.013   RAB11 family interacting protein 1 isoform 3 
MAST4                 0.013   microtubule associated serine/threonine kinase fami...
LOC728046             0.013   PREDICTED: hypothetical protein 
LOC645249             0.012   PREDICTED: hypothetical protein 
CELSR3                0.012   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
DACT3                 0.012   thymus expressed gene 3-like 
ICAM1                 0.012   intercellular adhesion molecule 1 precursor 
COL1A1                0.010   alpha 1 type I collagen preproprotein 
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
ZNF469                0.010   zinc finger protein 469 
NOM1                  0.010   nucleolar protein with MIF4G domain 1 
KCNN3                 0.010   small conductance calcium-activated potassium chann...
LOC100292801          0.010   PREDICTED: hypothetical protein 
LOC100291870          0.010   PREDICTED: hypothetical protein XP_002345664 
LOC100290691          0.010   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.010   PREDICTED: hypothetical protein XP_002344202 
ABRA                  0.010   actin-binding Rho activating protein 
LOC729991-MEF2B       0.010   myocyte enhancer factor 2B isoform b 
FAM90A10              0.010   PREDICTED: hypothetical protein LOC441328 
FAM90A9               0.010   PREDICTED: hypothetical protein 
FAM90A19              0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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