Guide to the Human Genome
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Search of human proteins with 40549446

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40549446 vesicle-associated membrane protein 1 isoform 2
[Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom...   236   3e-63
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo...   228   6e-61
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo...   228   8e-61
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi...   177   2e-45
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]       138   1e-33
gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]       82   1e-16
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]       69   6e-13
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]        58   2e-09
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho...    50   5e-07
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo...    50   5e-07
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              44   4e-05
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote...    35   0.017
gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa...    35   0.017
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]    32   0.11 
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]     32   0.11 
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]     32   0.11 
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]    32   0.11 
gi|217416343 fibrosin-like 1 [Homo sapiens]                            32   0.14 
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  31   0.18 
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]         31   0.18 
gi|190684671 mitogen-activated protein kinase binding protein 1 ...    31   0.18 
gi|190684677 mitogen-activated protein kinase binding protein 1 ...    31   0.18 
gi|33356148 formin-like 1 [Homo sapiens]                               31   0.18 
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ...    31   0.24 
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ...    31   0.24 
gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s...    31   0.24 
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           31   0.24 
gi|5730120 YKT6 v-SNARE protein [Homo sapiens]                         31   0.24 
gi|4885323 G protein-coupled receptor 37 [Homo sapiens]                30   0.31 
gi|33457316 pleckstrin homology domain containing, family O memb...    30   0.31 

>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
           sapiens]
          Length = 117

 Score =  236 bits (602), Expect = 3e-63
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
           MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60

Query: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR 117
           KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR
Sbjct: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR 117


>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
           sapiens]
          Length = 116

 Score =  228 bits (582), Expect = 6e-61
 Identities = 113/115 (98%), Positives = 114/115 (99%)

Query: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
           MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60

Query: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSK 115
           KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV +
Sbjct: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRR 115


>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
           sapiens]
          Length = 118

 Score =  228 bits (581), Expect = 8e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
           MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1   MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60

Query: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
           KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV
Sbjct: 61  KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113


>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
           2) [Homo sapiens]
          Length = 116

 Score =  177 bits (448), Expect = 2e-45
 Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 4/112 (3%)

Query: 2   SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
           +A   PPA      A  GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK
Sbjct: 4   TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59

Query: 62  LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
           LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I+
Sbjct: 60  LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIII 111


>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
          Length = 100

 Score =  138 bits (347), Expect = 1e-33
 Identities = 68/91 (74%), Positives = 77/91 (84%)

Query: 23  GPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESS 82
           GP     SNRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+S
Sbjct: 4   GPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 63

Query: 83  AAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
           AAKLKRKYWWKNCKM  +   +  I +++I+
Sbjct: 64  AAKLKRKYWWKNCKMWAIGITVLVIFIIIII 94


>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
          Length = 141

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 37/102 (36%), Positives = 67/102 (65%), Gaps = 5/102 (4%)

Query: 20  GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79
           GP GP      N +++  Q QV+EV+D+++ N+ KV+ER ++L EL D++++L   A+ F
Sbjct: 40  GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98

Query: 80  ESSAAKLKRKYWWKNCKMMIMLGAICAI----IVVVIVSKYR 117
            + + +L+R+ WW+ CK+  ++  + AI    I+++IV KYR
Sbjct: 99  SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIIILIVMKYR 140


>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
          Length = 100

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 30/83 (36%), Positives = 57/83 (68%)

Query: 31  NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
           N R++  Q++VE V +I+  NV+++L R + L  L ++ + L+A +  F++++ K+ RK+
Sbjct: 10  NDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKF 69

Query: 91  WWKNCKMMIMLGAICAIIVVVIV 113
           WWKN KM++++  I  II++ IV
Sbjct: 70  WWKNVKMIVLICVIVFIIILFIV 92


>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
          Length = 116

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 34  LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93
           L++ Q Q  EV +I+R N  KVLER  KL+EL  R+D L   +S F  +   L +K  W+
Sbjct: 6   LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65

Query: 94  N-----CKMMIMLGAICAIIVVVIV 113
           N     C  ++++G +  I++V++V
Sbjct: 66  NIRYRICVGLVVVGVLLIILIVLLV 90


>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
           sapiens]
          Length = 179

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 25/82 (30%), Positives = 49/82 (59%)

Query: 33  RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
           ++ +TQAQV+E+  I+  N+D V +R ++L  L D+ + L   +  F++++  L R    
Sbjct: 84  KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143

Query: 93  KNCKMMIMLGAICAIIVVVIVS 114
           KN K+ I++  +  + + +IVS
Sbjct: 144 KNLKLTIIIIIVSIVFIYIIVS 165


>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
           sapiens]
          Length = 220

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 25/82 (30%), Positives = 49/82 (59%)

Query: 33  RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
           ++ +TQAQV+E+  I+  N+D V +R ++L  L D+ + L   +  F++++  L R    
Sbjct: 125 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 184

Query: 93  KNCKMMIMLGAICAIIVVVIVS 114
           KN K+ I++  +  + + +IVS
Sbjct: 185 KNLKLTIIIIIVSIVFIYIIVS 206


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 1   MSAPAQPPAEGTEGTAPGGG--PPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER 58
           M+A A+ P +  EG+A GGG     PP +    ++LQ+ +   EE+  +   N     E 
Sbjct: 311 MAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEI 370

Query: 59  DQKLSELDDRADA-LQAGASQFESSAAKLKRKYWWKNCKMM 98
           D+  +E+D+  D   +  A Q +    +L+R    KNC+++
Sbjct: 371 DELRTEMDEMRDTFFEEDACQLQEMRHELERAN--KNCRIL 409


>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
           1 [Homo sapiens]
          Length = 828

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 4   PAQPPAEGTEGT-APGG--GPPGPPPNMTSNRRLQQTQAQVEE 43
           PA  PA G  G   P G  GPPGPP N+ S   L++ Q +V E
Sbjct: 343 PADSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAE 385


>gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
           sapiens]
          Length = 215

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 30  SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89
           + R L     ++++V  I+  N+++VL+R + LS LD +A+ L + + ++   A  L   
Sbjct: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190

Query: 90  YWWKNCKMMIMLGAICAIIVVVIV 113
             +        L A+    +++IV
Sbjct: 191 STYAK------LAAVAVFFIMLIV 208


>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
          Length = 1126

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7   PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
           P +   E +A G  PPGP PP  TS+ R+ +   Q  E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPPN 27
           APAQ P E T G AP G  P P  N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260


>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
          Length = 1126

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7   PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
           P +   E +A G  PPGP PP  TS+ R+ +   Q  E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPPN 27
           APAQ P E T G AP G  P P  N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260


>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
          Length = 1126

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7   PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
           P +   E +A G  PPGP PP  TS+ R+ +   Q  E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPPN 27
           APAQ P E T G AP G  P P  N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260


>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
          Length = 1132

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7   PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
           P +   E +A G  PPGP PP  TS+ R+ +   Q  E V ++ +N+
Sbjct: 415 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 461



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPPN 27
           APAQ P E T G AP G  P P  N
Sbjct: 243 APAQNP-ELTPGPAPAGPTPAPETN 266


>gi|217416343 fibrosin-like 1 [Homo sapiens]
          Length = 1045

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 11  GTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVD---IIRVNVDKVLERDQKL 62
           G  G  P G  P P       RR +++ +Q EEV+D   I   +  + LE+D  L
Sbjct: 48  GLRGAPPRGAAPAPRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMAL 102


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 1    MSAPAQPPAEGTEGTAPGGGPPGPP----PNMTSNRRLQQTQAQVEEVVDIIRVNV---- 52
            +  PA+PP       A    PP PP    P  ++ ++L++T A +   +  +   +    
Sbjct: 1336 LHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQED 1395

Query: 53   -----DKVLER------DQKLSELDDRADALQA 74
                 D   E+      D   S  DD AD L A
Sbjct: 1396 AQGPRDSAAEKSTGSILDDIGSMFDDLADQLDA 1428


>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
          Length = 434

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPPNMTS-----NRRLQQTQAQ 40
           APA  PA      AP   PP PPP++T      +  L QT AQ
Sbjct: 333 APAGAPAAPPTNAAPPAAPPPPPPHLTPEITPLSAALAQTIAQ 375


>gi|190684671 mitogen-activated protein kinase binding protein 1
            isoform a [Homo sapiens]
          Length = 1508

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1    MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53
            MS PAQ P A G +    G  PPG PP +  +      Q     ++   R+N D
Sbjct: 1117 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1170


>gi|190684677 mitogen-activated protein kinase binding protein 1
            isoform b [Homo sapiens]
          Length = 1514

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1    MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53
            MS PAQ P A G +    G  PPG PP +  +      Q     ++   R+N D
Sbjct: 1123 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1176


>gi|33356148 formin-like 1 [Homo sapiens]
          Length = 1100

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 4   PAQPPAEGTEGTAPGGGPPGPPP 26
           P  PP  GT+G  P   PP PPP
Sbjct: 589 PPPPPPPGTDGPVPPPPPPPPPP 611



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 3   APAQPPAEGTEGTAPGGGPPGPPP 26
           +P  PPA    G  P   PP PPP
Sbjct: 571 SPEPPPAPPLPGDLPPPPPPPPPP 594


>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
           sapiens]
          Length = 1723

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 4   PAQPPAEGTEGTAPGGGPPGPPP 26
           P QPP    E +   GGPP PPP
Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848


>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
           sapiens]
          Length = 1833

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 4   PAQPPAEGTEGTAPGGGPPGPPP 26
           P QPP    E +   GGPP PPP
Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848


>gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo
           sapiens]
          Length = 1087

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 9   AEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLE------RDQKL 62
           A G +G A  G P   PP     + L+Q  A       + R   DK  E      +  + 
Sbjct: 22  AAGAQGRA--GAPVPEPPKEEQQQALEQFAAAAAHSTPVRREVTDKEQEFAARAAKQLEY 79

Query: 63  SELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGA 103
            +L+D   + ++ +S+   S  K+ +K     CK++++ G+
Sbjct: 80  QQLEDDKLSQKSSSSKLSRSPLKIVKKPKSMQCKVILLDGS 120


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 3   APAQPPAEGTEGT--APG-GGPPGPP 25
           AP QP   GT+G   APG  GPPGPP
Sbjct: 271 APGQPGIPGTKGLPGAPGIAGPPGPP 296


>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
          Length = 198

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 34  LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAK 85
           + + QA+++E   I+   ++ +LER +KL +L  +++ L   +  F  +A K
Sbjct: 139 MTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 190


>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
          Length = 613

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 2   SAPAQPPAEGTEGTAPGGGPPGPP 25
           +AP + PA G    A   GPPGPP
Sbjct: 90  AAPGRDPAAGRGAEASAAGPPGPP 113


>gi|33457316 pleckstrin homology domain containing, family O member
           2 [Homo sapiens]
          Length = 490

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 4   PAQPPAEGTEGTAP--GGGPPGPPPNMTSNR 32
           P+Q P   T   AP  GG PP PPP + S +
Sbjct: 290 PSQAPCSETSEAAPREGGKPPTPPPKILSEK 320


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,384,938
Number of Sequences: 37866
Number of extensions: 263308
Number of successful extensions: 5030
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 3654
Number of HSP's gapped (non-prelim): 1516
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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