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Search of human proteins with 40217805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40217805 nucleolar protein 9 [Homo sapiens]
(702 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40217805 nucleolar protein 9 [Homo sapiens] 1433 0.0
gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens] 56 1e-07
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 42 0.003
gi|4557329 fas ligand [Homo sapiens] 39 0.016
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 38 0.028
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 38 0.028
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 38 0.037
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 36 0.11
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 36 0.14
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 36 0.14
gi|217272859 ATP/GTP-binding protein isoform 2 [Homo sapiens] 35 0.24
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.24
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 34 0.40
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 34 0.40
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 34 0.40
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ... 34 0.53
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 34 0.53
gi|40288197 GATA binding protein 6 [Homo sapiens] 33 0.69
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 33 0.69
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 33 0.69
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 33 0.69
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.69
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 33 0.69
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 33 0.69
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 33 0.90
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 33 0.90
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 33 0.90
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 33 0.90
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 33 0.90
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 33 0.90
>gi|40217805 nucleolar protein 9 [Homo sapiens]
Length = 702
Score = 1433 bits (3710), Expect = 0.0
Identities = 702/702 (100%), Positives = 702/702 (100%)
Query: 1 MADSGLLLKRGSCRSTWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRRRLLQAQAAGV 60
MADSGLLLKRGSCRSTWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRRRLLQAQAAGV
Sbjct: 1 MADSGLLLKRGSCRSTWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRRRLLQAQAAGV 60
Query: 61 DWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG 120
DWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG
Sbjct: 61 DWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG 120
Query: 121 PGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALH 180
PGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALH
Sbjct: 121 PGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALH 180
Query: 181 YSQPEKSKKELKREARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG 240
YSQPEKSKKELKREARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG
Sbjct: 181 YSQPEKSKKELKREARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG 240
Query: 241 SSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCP 300
SSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCP
Sbjct: 241 SSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCP 300
Query: 301 VILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGP 360
VILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGP
Sbjct: 301 VILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGP 360
Query: 361 PFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRESPLIVNTMGWVSDQGLLLLI 420
PFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRESPLIVNTMGWVSDQGLLLLI
Sbjct: 361 PFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRESPLIVNTMGWVSDQGLLLLI 420
Query: 421 DLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEF 480
DLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEF
Sbjct: 421 DLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEF 480
Query: 481 ADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLS 540
ADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLS
Sbjct: 481 ADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLS 540
Query: 541 PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQT 600
PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQT
Sbjct: 541 PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQT 600
Query: 601 PICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTV 660
PICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTV
Sbjct: 601 PICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTV 660
Query: 661 PYVTTDYNFKLPGASEKIGAREPEEAHKEKPYRRPKFCRKMK 702
PYVTTDYNFKLPGASEKIGAREPEEAHKEKPYRRPKFCRKMK
Sbjct: 661 PYVTTDYNFKLPGASEKIGAREPEEAHKEKPYRRPKFCRKMK 702
>gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens]
Length = 425
Score = 55.8 bits (133), Expect = 1e-07
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 280 STLSALEELVNVSCEEVDGCPVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQ 339
+T +ALE++ + +E + P ++V G DVGKST R L+N+ + Y+E D+GQ
Sbjct: 95 NTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQ 154
Query: 340 TEFTPPGCISLLNITEPVLGPPFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKR 399
+ PG + L I P ++ P + ++G + N + Y I + + +
Sbjct: 155 GSVSIPGTMGALYIERPADVEEGFSIQAP-LVYHFGSTTPGTNIKLYNKITSRLADVFNQ 213
Query: 400 E---------SPLIVNTMGWVSDQGLLLLI 420
S ++NT GWV G L+
Sbjct: 214 RCEVNRRASVSGCVINTCGWVKGSGYQALV 243
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 41.6 bits (96), Expect = 0.003
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 33 PRRRLGSLRWCGRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPA 92
PR S + RR+ + + A D + R+ S + P + PSP PSPTPA
Sbjct: 497 PRGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPA 556
Query: 93 ----SEPESEPELESASSCHRPLLIPPVRPVGP 121
+P +E ++A P PPV P P
Sbjct: 557 PPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKP 589
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 38.9 bits (89), Expect = 0.016
Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 76 RRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG---PGRALLLLPVEQ 132
RRP P P P P P P P L PL +PP++ G G LL++
Sbjct: 38 RRPGQRRPPPPPPPPPLPPPPPPPPLP-------PLPLPPLKKRGNHSTGLCLLVM---- 86
Query: 133 GFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALHYSQPEKSKKELK 192
F + V G Q+F + + ++T S L H S P + KKEL+
Sbjct: 87 -FFMVLVALVGLGLGMFQLFHLQKELAELRESTSQMHTASSLEKQIGHPSPPPE-KKELR 144
Query: 193 REARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPGSSYIF 245
+ A KS+ W IVLL +K + + G +++
Sbjct: 145 KVAHLTGKSNSRSMPLEW-----EDTYGIVLLSGVKYKKGGLVINETGLYFVY 192
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 38.1 bits (87), Expect = 0.028
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 44 GRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELES 103
GRR RR A G ++ A + + A P+P P P+ A +EP L
Sbjct: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEE------PTPAPMPSSAPRGPTEPALRR 102
Query: 104 ASSCHRPLLIPPVRPVGPGRA 124
SS RPL P G GRA
Sbjct: 103 PSSADRPLAPGPSSSPGAGRA 123
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 38.1 bits (87), Expect = 0.028
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 44 GRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELES 103
GRR RR A G ++ A + + A P+P P P+ A +EP L
Sbjct: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEE------PTPAPMPSSAPRGPTEPALRR 205
Query: 104 ASSCHRPLLIPPVRPVGPGRA 124
SS RPL P G GRA
Sbjct: 206 PSSADRPLAPGPSSSPGAGRA 226
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 37.7 bits (86), Expect = 0.037
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 71 RAAAARRPNTATPSPI--PSPTPASEPESEPELESASSCHRPLLIPPVRPVGP 121
R A+ P+TA P+P P+P PA P P L SA++ R P RP P
Sbjct: 493 RLASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASP 545
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 36.2 bits (82), Expect = 0.11
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 69 VSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGRALLLL 128
VS A P P P P P + P S P+ +A P+++PP R PG + L
Sbjct: 319 VSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPFRVPLPGMPIPLP 378
Query: 129 PVEQG 133
V G
Sbjct: 379 GVLPG 383
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 35.8 bits (81), Expect = 0.14
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 49 RRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPE--SEPELESASS 106
R R QA+A R G + A AR P A +P P+S P +EP L SS
Sbjct: 51 RVRAAQARAR----RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSS 106
Query: 107 CHRPLLIPPVRPVGPGRA 124
RPL P GRA
Sbjct: 107 AERPLAQAPSSSASVGRA 124
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 35.8 bits (81), Expect = 0.14
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 69 VSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGRALLL 127
VS A P P P P P + P S P+ +A P+++PP R PG + L
Sbjct: 319 VSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTTAIPAFPPVMVPPFRVPLPGMPIPL 377
>gi|217272859 ATP/GTP-binding protein isoform 2 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.24
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 280 STLSALEELVNVSCEEVDGCPVILVCGSQDVGKSTFNRYLINHLLNS 326
+T +ALE++ + +E + P ++V G DVGKST R L+N+ + S
Sbjct: 95 NTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRLLLNYAITS 141
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.0 bits (79), Expect = 0.24
Identities = 39/146 (26%), Positives = 51/146 (34%), Gaps = 42/146 (28%)
Query: 18 LRVRKARPQLI-LSRRPRRRLGSLRWCGRRRLRRRLLQ------AQAAGVDWREGAR--- 67
LR RKARP L + R RRR G R L + + Q + + +R AR
Sbjct: 42 LRSRKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQP 101
Query: 68 ----------------QVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSC---- 107
+ AAAA P T P P P+P A+ P P +A++
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPS 161
Query: 108 ------------HRPLLIPPVRPVGP 121
PL PP P P
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAPAAP 187
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 34.3 bits (77), Expect = 0.40
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 47 RLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPS-PTPASEPESEPELESAS 105
R +++L++ GV G+R RAA RP T + P P PA EP
Sbjct: 254 RGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPR 313
Query: 106 SCHRPLLI-----PPVRPVGPGRAL 125
+ RP PP P P R L
Sbjct: 314 APPRPPPAARRPPPPPAPGAPARPL 338
>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
sapiens]
Length = 252
Score = 34.3 bits (77), Expect = 0.40
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 34 RRRLGSLRWCGRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPAS 93
RR L R G R R LLQ WR R+ A AAR P P+P
Sbjct: 99 RRLLSPCRAGGNRAYGRELLQVAEV---WRIRQREAGAAGAARAPKP------PAPGSGQ 149
Query: 94 EPESEPELESASS--CHRPLLIPPVRPVG 120
++P L++A+S RP PP G
Sbjct: 150 ALPADPLLQAAASTLAGRPRAPPPAPAAG 178
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 34.3 bits (77), Expect = 0.40
Identities = 36/93 (38%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 38 GSLRWCGRRRLRRRLLQAQAAGVDWREGAR--QVSRAAAARRPNT-------ATPSPIPS 88
GS+R G RR A AA +G R + R AA RR +T A PSP P
Sbjct: 430 GSMR--GARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPP 487
Query: 89 PTPAS-EPESEPELESASSCHRPLLI---PPVR 117
P+P S +P+S P L A+S PL + PP R
Sbjct: 488 PSPGSADPDSSP-LAKAASPSPPLRLEGSPPTR 519
>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
sapiens]
Length = 252
Score = 33.9 bits (76), Expect = 0.53
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 34 RRRLGSLRWCGRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPAS 93
RR L R G R R LLQ WR R+ A AAR P P+P
Sbjct: 99 RRLLSPCRAGGNRAYGRELLQVAEV---WRIRQREAGAARAARAPKP------PAPGSGQ 149
Query: 94 EPESEPELESASS--CHRPLLIPPVRPVG 120
++P L++A+S RP PP G
Sbjct: 150 ALPADPLLQAAASTLAGRPRAPPPAPAAG 178
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 33.9 bits (76), Expect = 0.53
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 47 RLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPS-PTPASEPESEPELESAS 105
R +++L++ GV G+R RAA RP T + P P PA EP
Sbjct: 254 RGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPR 313
Query: 106 SCHRPLLIPPVRPVGPGRALLLL 128
+ RP P RP P + LL
Sbjct: 314 APPRP--PPAARPQCPVQCECLL 334
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 33.5 bits (75), Expect = 0.69
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 42 WCGRRRLRRRLLQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
WC +R AAG D + SRA AR P+T PSPI S + + E
Sbjct: 8 WCLPKRFG-------AAGADASD-----SRAFPAREPSTP-PSPISSSSSSCSRGGERGP 54
Query: 102 ESASSCHRPLLIPPVRPVGPGRALLL 127
AS+C P L P R+LLL
Sbjct: 55 GGASNCGTPQLDTEAAAGPPARSLLL 80
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 33.5 bits (75), Expect = 0.69
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 35 RRLGSLRWCGRRRLRRRLLQAQAAGVDWREGARQVSRAAA---ARRPNTATPSPI-PSPT 90
R L L W R R ++ A +D+ + + + ++A + A +T TPSP+ P+P+
Sbjct: 1091 RCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPS 1150
Query: 91 PASEPESEPELESASS 106
PAS S+ L +AS+
Sbjct: 1151 PASSVGSQGSLSNASA 1166
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 33.5 bits (75), Expect = 0.69
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 35 RRLGSLRWCGRRRLRRRLLQAQAAGVDWREGARQVSRAAA---ARRPNTATPSPI-PSPT 90
R L L W R R ++ A +D+ + + + ++A + A +T TPSP+ P+P+
Sbjct: 1066 RCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPS 1125
Query: 91 PASEPESEPELESASS 106
PAS S+ L +AS+
Sbjct: 1126 PASSVGSQGSLSNASA 1141
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 33.5 bits (75), Expect = 0.69
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 17/59 (28%)
Query: 66 ARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGRA 124
AR +SRAA + PSP+P+P PA P+SEP E + L+PP P+ PG A
Sbjct: 491 ARYMSRAAGS-------PSPLPAPDPA--PKSEPAAEEGA------LVPP-EPI-PGTA 532
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.5 bits (75), Expect = 0.69
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 53 LQAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPE 100
L A+A +E ARQ A RR T P P P P+P P + P+
Sbjct: 296 LVAEAGRGGAKEAARQDEGARLLRRTETLLPGPRPCPSPLPPPPAPPK 343
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 33.5 bits (75), Expect = 0.69
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 72 AAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIP 114
A AA P + P+P P+P+P++ P + ELES R L P
Sbjct: 770 APAAPSPPPSPPAPTPTPSPSTNPLVDLELESFKKDPRQSLTP 812
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 33.5 bits (75), Expect = 0.69
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 73 AAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG-PGRA 124
A AR P T+ P+P+P+P P P L A HR + RP G PG A
Sbjct: 123 ARARAPGTSAPTPLPTPVP-------PPLAPAQLRHRLRHLLAARPPGHPGAA 168
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 54 QAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
++Q A + R G + + +P++ PSP PSP+P EP SEP L
Sbjct: 235 RSQGAIIADRPGLPGPEHSPSESQPSS--PSPTPSPSPVLEPGSEPNL 280
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 54 QAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
++Q A + R G + + +P++ PSP PSP+P EP SEP L
Sbjct: 148 RSQGAIIADRPGLPGPEHSPSESQPSS--PSPTPSPSPVLEPGSEPNL 193
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 54 QAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
++Q A + R G + + +P++ PSP PSP+P EP SEP L
Sbjct: 71 RSQGAIIADRPGLPGPEHSPSESQPSS--PSPTPSPSPVLEPGSEPNL 116
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 54 QAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
++Q A + R G + + +P++ PSP PSP+P EP SEP L
Sbjct: 235 RSQGAIIADRPGLPGPEHSPSESQPSS--PSPTPSPSPVLEPGSEPNL 280
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 54 QAQAAGVDWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPEL 101
++Q A + R G + + +P++ PSP PSP+P EP SEP L
Sbjct: 39 RSQGAIIADRPGLPGPEHSPSESQPSS--PSPTPSPSPVLEPGSEPNL 84
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 33.1 bits (74), Expect = 0.90
Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 53 LQAQA---AGVDWREGARQVSRAAAARRPNTAT-PSPIPSPTPASEPESEPELE------ 102
LQ+QA A W+E ++ + P + P P P P P PE +PE +
Sbjct: 77 LQSQASEEAKGPWQEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPLPDPA 136
Query: 103 -------SASSCHRPLLIPPVRPVGPGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFT 155
+ H P P V G R P E GF + + T G +FG
Sbjct: 137 PLPELEFESERVHEPEPTPTVETRGTARG--FQPPEGGFGWVVVFAATWCNG--SIFGIH 192
Query: 156 ISQG 159
S G
Sbjct: 193 NSVG 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,985,579
Number of Sequences: 37866
Number of extensions: 1595331
Number of successful extensions: 9327
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 8680
Number of HSP's gapped (non-prelim): 608
length of query: 702
length of database: 18,247,518
effective HSP length: 109
effective length of query: 593
effective length of database: 14,120,124
effective search space: 8373233532
effective search space used: 8373233532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.