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Search of human proteins with 39930610
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39930610 sodium channel, voltage-gated, type I, beta isoform
b [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 560 e-160
gi|4506805 sodium channel, voltage-gated, type I, beta isoform a... 306 2e-83
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 101 6e-22
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 101 6e-22
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 46 4e-05
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 46 4e-05
gi|4505243 myelin protein zero [Homo sapiens] 41 0.001
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 37 0.024
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 37 0.024
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 36 0.040
gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo ... 35 0.090
gi|55769537 zinc finger protein 658 [Homo sapiens] 35 0.090
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 33 0.34
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 33 0.34
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 32 0.58
gi|150456449 hexosaminidase (glycosyl hydrolase family 20, catal... 32 0.58
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 32 0.58
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens] 32 0.58
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 31 1.3
gi|5901910 CD160 antigen [Homo sapiens] 31 1.3
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 30 1.7
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 30 1.7
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 30 1.7
gi|48717244 zinc finger protein 782 [Homo sapiens] 30 1.7
gi|148612833 pellino 3 alpha isoform 2 [Homo sapiens] 30 2.2
gi|148612798 pellino 3 alpha isoform 1 [Homo sapiens] 30 2.2
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 30 2.9
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 29 4.9
gi|54792136 follistatin-like 4 [Homo sapiens] 29 4.9
gi|55769568 zinc finger protein 37a [Homo sapiens] 29 4.9
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 560 bits (1444), Expect = e-160
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
Sbjct: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
Query: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
Sbjct: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
Query: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTHRRARWRDRWQAVDRTGWL 180
CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTHRRARWRDRWQAVDRTGWL
Sbjct: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTHRRARWRDRWQAVDRTGWL 180
Query: 181 CAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTS 240
CAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTS
Sbjct: 181 CAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTS 240
Query: 241 GRCLLSLSQRVVLGLPGIIIRCVSRGVV 268
GRCLLSLSQRVVLGLPGIIIRCVSRGVV
Sbjct: 241 GRCLLSLSQRVVLGLPGIIIRCVSRGVV 268
>gi|4506805 sodium channel, voltage-gated, type I, beta isoform a
[Homo sapiens]
Length = 218
Score = 306 bits (783), Expect = 2e-83
Identities = 150/155 (96%), Positives = 150/155 (96%)
Query: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
Sbjct: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
Query: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
Sbjct: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
Query: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAA 155
CHVYRLLFFENYEHNTSVVKKIHIEVVDK A
Sbjct: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMA 155
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 101 bits (252), Expect = 6e-22
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
Query: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
Query: 125 RLLFFENYEHNTSVVKKIHIEVVDK 149
R FE + + I + V ++
Sbjct: 124 REFEFEAHRPFVKTTRLIPLRVTEE 148
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 101 bits (252), Expect = 6e-22
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
Query: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
Query: 125 RLLFFENYEHNTSVVKKIHIEVVDK 149
R FE + + I + V ++
Sbjct: 124 REFEFEAHRPFVKTTRLIPLRVTEE 148
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 45.8 bits (107), Expect = 4e-05
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 3 RLLALVVGAALVSSACG-GCVEVDSETE--AVYGMTFKILCISCKRRSETNAETFTEWTF 59
R L V+ AAL G +EV + E G K+ C K S T T W+F
Sbjct: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSF 76
Query: 60 RQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDY 119
+ +G + V Y + L F+ R+ W G D +D SI I N+ + H+G Y
Sbjct: 77 QPEGADTTVSFFHYSQGQVYLGNYPPFKDRISW---AGDLDKKDASINIENMQFIHNGTY 133
Query: 120 ECHV 123
C V
Sbjct: 134 ICDV 137
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 45.8 bits (107), Expect = 4e-05
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 3 RLLALVVGAALVSSACG-GCVEVDSETE--AVYGMTFKILCISCKRRSETNAETFTEWTF 59
R L V+ AAL G +EV + E G K+ C K S T T W+F
Sbjct: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSF 76
Query: 60 RQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDY 119
+ +G + V Y + L F+ R+ W G D +D SI I N+ + H+G Y
Sbjct: 77 QPEGADTTVSFFHYSQGQVYLGNYPPFKDRISW---AGDLDKKDASINIENMQFIHNGTY 133
Query: 120 ECHV 123
C V
Sbjct: 134 ICDV 137
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 4 LLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKG 63
L L+ + ++S A V D E G + C ++ +FT W ++ +G
Sbjct: 24 LAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFT-WRYQPEG 82
Query: 64 TEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHV 123
+ + I Y ++E F+ R+ W G K D SI I N+ Y+ +G + C V
Sbjct: 83 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWK---DGSIVIHNLDYSDNGTFTCDV 139
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 3 RLLALVVGAALVSSACGGCVEVDSET--EAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
R + L++G L + VE+ + EAV G ++ C +A T T W FR
Sbjct: 8 RAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVT-WNFR 66
Query: 61 --QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGD 118
G E+FV Y + Q RF+ RV W+G+ + D SI + + ++ +G
Sbjct: 67 PLDGGPEQFV--FYYHIDPFQ-PMSGRFKDRVSWDGN---PERYDASILLWKLQFDDNGT 120
Query: 119 YECHVYRLLFFENYEHNTSVVKKIHIEVVDKGE----------SGAACPFTVT------- 161
Y C V +N V+ +I + VV G+AC +
Sbjct: 121 YTCQV------KNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVL 174
Query: 162 ---HRRARWRDR 170
+R+ RW +R
Sbjct: 175 FQHYRKKRWAER 186
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 3 RLLALVVGAALVSSACGGCVEVDSET--EAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
R + L++G L + VE+ + EAV G ++ C +A T T W FR
Sbjct: 8 RAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVT-WNFR 66
Query: 61 --QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGD 118
G E+FV Y + Q RF+ RV W+G+ + D SI + + ++ +G
Sbjct: 67 PLDGGPEQFV--FYYHIDPFQ-PMSGRFKDRVSWDGN---PERYDASILLWKLQFDDNGT 120
Query: 119 YECHVYRLLFFENYEHNTSVVKKIHIEVVDKGE----------SGAACPFTVT------- 161
Y C V +N V+ +I + VV G+AC +
Sbjct: 121 YTCQV------KNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVL 174
Query: 162 ---HRRARWRDR 170
+R+ RW +R
Sbjct: 175 FQHYRKKRWAER 186
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 35.8 bits (81), Expect = 0.040
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
+ D+ G K+ C + K S+ + +WT+R + V I Y++
Sbjct: 34 IRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTT 92
Query: 82 EDERFEGRVVWNGS--RGTKDLQDLSIFITNVTYNHSGDYECHV 123
F R+ W G+ +G D SI I+N T +G + C V
Sbjct: 93 AG-TFRDRISWVGNVYKG-----DASISISNPTIKDNGTFSCAV 130
>gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo
sapiens]
Length = 153
Score = 34.7 bits (78), Expect = 0.090
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 169 DRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWP 207
+ WQ V R G+ +W A P Q + SS +CP WP
Sbjct: 110 EMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFWP 148
>gi|55769537 zinc finger protein 658 [Homo sapiens]
Length = 1059
Score = 34.7 bits (78), Expect = 0.090
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSV----VKKIHIEVVD 148
N S+ + QD+++ T + H G E +YR + ENY H SV K I ++
Sbjct: 2 NMSQASVSFQDVTVEFTREEWQHLGPVERTLYRDVMLENYSHLISVGYCITKPKVISKLE 61
Query: 149 KGE 151
KGE
Sbjct: 62 KGE 64
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 32.7 bits (73), Expect = 0.34
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRL 126
RF GRV G GT ++SIFI N + +G Y+C V L
Sbjct: 87 RFHGRV---GFTGTMPATNVSIFINNTQLSDTGTYQCLVNNL 125
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 32.7 bits (73), Expect = 0.34
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRL 126
RF GRV G GT ++SIFI N + +G Y+C V L
Sbjct: 86 RFHGRV---GFTGTMPATNVSIFINNTQLSDTGTYQCLVNNL 124
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 32.0 bits (71), Expect = 0.58
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
V V + + G ++ C + + + WT+++ L++ +++ L+
Sbjct: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLK 91
Query: 82 EDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHV 123
ERF+ RV ++G+ D+S+ + NV G Y C++
Sbjct: 92 L-ERFQDRVEFSGNPSK---YDVSVMLRNVQPEDEGIYNCYI 129
>gi|150456449 hexosaminidase (glycosyl hydrolase family 20,
catalytic domain) containing [Homo sapiens]
Length = 585
Score = 32.0 bits (71), Expect = 0.58
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 188 PQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQL------CHLCCMTSG 241
PQ+ A +PSC P S R MP RSG+R C LCC TS
Sbjct: 444 PQRSASWHSGAPSCRSWRLPCSWLSTR----MPW---RSGWRKTCTPACSGCKLCCRTSA 496
Query: 242 RCL 244
RCL
Sbjct: 497 RCL 499
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 32.0 bits (71), Expect = 0.58
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 25 DSETEAVYGMTFKILCISCKRRSETNAET-FTEWTFRQKGTEEFVKILRYENEVLQLEED 83
+S + V G + LC R N FTE R+ G +EFVK +R E + +L+
Sbjct: 164 ESRSYEVMGSMEETLCNIDDRDGNRNVHLEFTERESRKDGEDEFVKEMREERKFQKLKNK 223
Query: 84 ERFEGRVVWNGSRGTKDLQDLSIFITNV 111
E V SR K L D +T V
Sbjct: 224 EE-----VLKASREEKVLMDEGAVLTLV 246
>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
Length = 493
Score = 32.0 bits (71), Expect = 0.58
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 107 FITNVTYNHSGDYEC--------HVYRLLFFENYEHNTSVVKKIHI-EVVDKGESGAACP 157
++ N T + S +Y+C YR + +Y H + ++ ++ E VD ES A C
Sbjct: 397 YLQNSTASSSTEYQCIPDSTIPQEDYRC--WPSYHHGSCLLSVFNLAEAVDVCESHAQCR 454
Query: 158 FTVTHRRARWRDRWQAVDRTGW 179
V + W R +TGW
Sbjct: 455 AFVVTNQTTWTGRQLVFFKTGW 476
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYEC 121
+ EG ++ G D +F++N+T H+G YEC
Sbjct: 309 QLEGGLLGLGGHSASDTGSGMLFLSNITLAHAGKYEC 345
>gi|5901910 CD160 antigen [Homo sapiens]
Length = 181
Score = 30.8 bits (68), Expect = 1.3
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 38/159 (23%)
Query: 6 ALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKG-- 63
AL + A+V GGC+ + S G ++C ++ E AE F + + +
Sbjct: 11 ALAILLAIVDIQSGGCINITSSASQE-GTRLNLICTVWHKKEE--AEGFVVFLCKDRSGD 67
Query: 64 --TEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIF-ITNVTYNHSGDYE 120
E +K LR + + G G ++ +F I+ VT HSG Y+
Sbjct: 68 CSPETSLKQLRLKRDP----------------GIDGVGEISSQLMFTISQVTPLHSGTYQ 111
Query: 121 C-------------HVYRLLFFENYEHN-TSVVKKIHIE 145
C H + +LF E + T + ++ H+E
Sbjct: 112 CCARSQKSGIRLQGHFFSILFTETGNYTVTGLKQRQHLE 150
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 97 GTKDLQDLSIFITNVTYNHSGDYECH 122
GT +FI N+T N+SG Y CH
Sbjct: 275 GTFQQSTQELFIPNITVNNSGSYTCH 300
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 30.4 bits (67), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 97 GTKDLQDLSIFITNVTYNHSGDYECH 122
GT +FI N+T N+SG Y CH
Sbjct: 275 GTFQQSTQELFIPNITVNNSGSYTCH 300
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 30.4 bits (67), Expect = 1.7
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 105 SIFITNVTYNHSGDYECHVYRLLFFENY---EHNTSVVKKIHIEVVDK--GESGAACPFT 159
S F+ NVTY+ +G Y CH Y L + + HNT + + VVDK S +A P T
Sbjct: 376 SFFLNNVTYSDTGIYSCH-YLLTWKTSIRMPSHNT-----VELMVVDKPPKPSLSAWPST 429
Query: 160 V 160
V
Sbjct: 430 V 430
>gi|48717244 zinc finger protein 782 [Homo sapiens]
Length = 699
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSV 138
N + + QD+++ + + H G E +YR + ENY H SV
Sbjct: 2 NTFQASVSFQDVTVEFSQEEWQHMGPVERTLYRDVMLENYSHLVSV 47
>gi|148612833 pellino 3 alpha isoform 2 [Homo sapiens]
Length = 445
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 190 QRAEGEGSSPSCPLQLWPLFLSSPRRGQSMP 220
QR E + P CP+ L L SP RG++ P
Sbjct: 297 QRQEANAARPQCPVGLSTLAFPSPARGRTAP 327
>gi|148612798 pellino 3 alpha isoform 1 [Homo sapiens]
Length = 469
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 190 QRAEGEGSSPSCPLQLWPLFLSSPRRGQSMP 220
QR E + P CP+ L L SP RG++ P
Sbjct: 321 QRQEANAARPQCPVGLSTLAFPSPARGRTAP 351
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 29.6 bits (65), Expect = 2.9
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNG-------SRGTKDLQDLSIFITNVTY 113
+ G+E + IL+ E +L+ + +V WN R TK+ ++ I NV+Y
Sbjct: 259 ESGSESSITILKGEILLLECFAEGLPTPQVDWNKIGGDLPKGRETKENYGKTLKIENVSY 318
Query: 114 NHSGDYECHVYRLLFFENYEHNTSV------VKKIHIEVVDKGESG 153
G+Y C L ++ + V KK V G +G
Sbjct: 319 QDKGNYRCTASNFLGTATHDFHVIVEEPPRWTKKPQSAVYSTGSNG 364
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 103 DLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAAC 156
D SI +TN+ + G Y+C V + N KKIH+ V+ K SGA C
Sbjct: 102 DASINVTNLQLSDIGTYQCKVKKAPGVAN--------KKIHLVVLVK-PSGARC 146
>gi|54792136 follistatin-like 4 [Homo sapiens]
Length = 842
Score = 28.9 bits (63), Expect = 4.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 102 QDLSIFITNVTYNHSGDYECH 122
+D S++IT VT H G+Y CH
Sbjct: 302 EDDSLYITKVTTIHMGNYTCH 322
>gi|55769568 zinc finger protein 37a [Homo sapiens]
Length = 561
Score = 28.9 bits (63), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 95 SRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSV 138
S+G+ +D+++ T + H + +YR + ENY H SV
Sbjct: 4 SQGSVSFRDVTVGFTQEEWQHLDPAQRTLYRDVMLENYSHLVSV 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,782,501
Number of Sequences: 37866
Number of extensions: 514720
Number of successful extensions: 1603
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 50
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.