Guide to the Human Genome
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Name: PELI3 Sequence: fasta or formatted (469aa) NCBI GI: 148612798
Description:

pellino 3 alpha isoform 1

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [445aa] pellino 3 alpha isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         39           2
 C cysteine            4.3         20           2
 D aspartate           4.3         20           1
 E glutamate           6.0         28           2
 F phenylalanine       2.1         10           1
 G glycine            11.1         52           3
 H histidine           3.8         18           2
 I isoleucine          3.0         14           1
 K lysine              2.1         10           1
 L leucine             8.3         39           2
 M methionine          1.3          6           1
 N asparagine          2.6         12           1
 P proline             7.5         35           2
 Q glutamine           4.1         19           2
 R arginine            8.1         38           3
 S serine              7.9         37           2
 T threonine           5.3         25           2
 V valine              5.8         27           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pellino 3 alpha isoform 1 
PELI3                 0.932   pellino 3 alpha isoform 2 
PELI2                 0.618   pellino 2 
PELI1                 0.613   pellino protein 
C20orf95              0.012   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.012   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.012   PREDICTED: Rho GTPase-activating protein 18-like [H...
CHRDL2                0.009   chordin-like 2 
LOC100290780          0.008   PREDICTED: hypothetical protein XP_002348295 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 1 
USH2A                 0.007   usherin isoform B 
LOC339742             0.006   PREDICTED: hypothetical protein 
ANO8                  0.006   anoctamin 8 
PLD4                  0.005   phospholipase D4 
GNPTG                 0.005   N-acetylglucosamine-1-phosphotransferase, gamma subu...
SCN1B                 0.005   sodium channel, voltage-gated, type I, beta isoform ...
C21orf2               0.005   hypothetical protein LOC755 
LOC100294450          0.004   PREDICTED: hypothetical protein 
RNF39                 0.004   ring finger protein 39 isoform 1 
RNF39                 0.004   ring finger protein 39 isoform 2 
FAM83A                0.004   hypothetical protein LOC84985 isoform b 
FAM83A                0.004   hypothetical protein LOC84985 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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