Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IGSF1 Sequence: fasta or formatted (1336aa) NCBI GI: 45505167
Description:

immunoglobulin superfamily, member 1 isoform 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [242aa] immunoglobulin superfamily, member 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         73           2
 C cysteine            2.5         34           2
 D aspartate           3.7         49           2
 E glutamate           6.5         87           2
 F phenylalanine       4.0         54           3
 G glycine             7.4         99           2
 H histidine           1.9         25           1
 I isoleucine          4.9         65           2
 K lysine              4.4         59           2
 L leucine            10.1        135           3
 M methionine          2.6         35           1
 N asparagine          3.1         41           2
 P proline             7.8        104           2
 Q glutamine           3.7         50           2
 R arginine            4.0         53           2
 S serine              8.5        114           2
 T threonine           6.6         88           2
 V valine              6.5         87           5
 W tryptophan          3.0         40           1
 Y tyrosine            3.3         44           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 1 isoform 1 [Homo... 
IGSF1                 0.163   immunoglobulin superfamily, member 1 isoform 2 [Homo...
LILRA2                0.067   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA2                0.064   leukocyte immunoglobulin-like receptor, subfamily A...
LILRB3                0.064   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.064   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA6                0.062   leukocyte immunoglobulin-like receptor, subfamily A...
A1BG                  0.058   alpha 1B-glycoprotein precursor 
LILRB5                0.057   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.057   leukocyte immunoglobulin-like receptor, subfamily B, ...
LILRB2                0.056   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.056   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA4                0.056   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA1                0.055   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA3                0.055   leukocyte immunoglobulin-like receptor, subfamily A ...
LILRB1                0.053   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.053   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.053   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.053   leukocyte immunoglobulin-like receptor, subfamily B...
OSCAR                 0.044   osteoclast-associated receptor isoform 1 
OSCAR                 0.043   osteoclast-associated receptor isoform 3 
OSCAR                 0.043   osteoclast-associated receptor isoform 4 
OSCAR                 0.043   osteoclast-associated receptor isoform 5 
LILRB5                0.042   leukocyte immunoglobulin-like receptor, subfamily B...
KIR3DL3               0.038   killer cell immunoglobulin-like receptor, three doma...
LOC441864             0.037   hypothetical LOC441864 
LOC100293904          0.034   PREDICTED: similar to leucocyte immunoglobulin-like...
KIR3DL1               0.034   killer cell immunoglobulin-like receptor, three dom...
KIR3DS1               0.033   killer cell immunoglobulin-like receptor, three dom...
GP6                   0.033   glycoprotein VI (platelet) isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press