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Search of human proteins with 39930383
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39930383 BarH-like homeobox 2 [Homo sapiens]
(387 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 790 0.0
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 313 1e-85
gi|24497513 homeobox A3 isoform a [Homo sapiens] 106 4e-23
gi|13562112 homeobox A3 isoform a [Homo sapiens] 106 4e-23
gi|157743259 H6 family homeobox 3 [Homo sapiens] 100 2e-21
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 92 6e-19
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 91 2e-18
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 89 7e-18
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 88 1e-17
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 85 1e-16
gi|226437602 NK1 homeobox 2 [Homo sapiens] 84 2e-16
gi|27886557 msh homeobox 2 [Homo sapiens] 83 5e-16
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 83 5e-16
gi|70608170 H6 family homeobox 2 [Homo sapiens] 82 8e-16
gi|19923352 NK3 homeobox 1 [Homo sapiens] 82 8e-16
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 82 1e-15
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 81 1e-15
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 81 1e-15
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 81 1e-15
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 81 1e-15
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 81 1e-15
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 81 1e-15
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 81 2e-15
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 80 2e-15
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 80 2e-15
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 79 5e-15
gi|24497589 aristaless related homeobox [Homo sapiens] 79 5e-15
gi|147901462 brain specific homeobox [Homo sapiens] 79 5e-15
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 78 2e-14
gi|4885185 distal-less homeobox 3 [Homo sapiens] 77 2e-14
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 790 bits (2041), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT 60
MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
Sbjct: 1 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT 60
Query: 61 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP 120
APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
Sbjct: 61 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP 120
Query: 121 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHE 180
PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHE
Sbjct: 121 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHE 180
Query: 181 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS 240
SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS
Sbjct: 181 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS 240
Query: 241 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 300
DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE
Sbjct: 241 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 300
Query: 301 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV 360
AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV
Sbjct: 301 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV 360
Query: 361 LIHGLGPGGQPALNPLSSPIPGTPHPR 387
LIHGLGPGGQPALNPLSSPIPGTPHPR
Sbjct: 361 LIHGLGPGGQPALNPLSSPIPGTPHPR 387
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 313 bits (803), Expect = 1e-85
Identities = 203/389 (52%), Positives = 237/389 (60%), Gaps = 66/389 (16%)
Query: 3 MEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAP 62
MEG++G FGID+ILS + GSP + GD PL D RS SP SE + ++P
Sbjct: 1 MEGSNG--FGIDSILSHRA-GSPALPKGD--PL----LGDCRSPLELSPRSESSSDCSSP 51
Query: 63 SSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPP 122
+SP +E P P A L Q
Sbjct: 52 ASPGRDCLETGTPR--------------------PGGASGPGLDSHLQ------------ 79
Query: 123 PPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS--VSSPHHTPKQESNAVHE 180
P QL SA + RT TSSFLI+DIL D KPLAACAPYS+S ++P + + A
Sbjct: 80 --PGQL-SAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAA-- 134
Query: 181 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS 240
ED + KLDK + S + KEEGDREI+SSR+SPPVR KKPRKARTAF+
Sbjct: 135 --------EDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFT 186
Query: 241 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 300
DHQL QLERSFERQKYLSVQDRM+LAA+LNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE
Sbjct: 187 DHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246
Query: 301 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV 360
AGNYSALQRMFPSPYFY SL+ ++D AA+Y +YR P AP P LQRPLVPR+
Sbjct: 247 AGNYSALQRMFPSPYFYPQSLVSNLD------PGAALY--LYRGPSAPPPALQRPLVPRI 298
Query: 361 LIHGLGPGGQ--PALNPLSSPIPGTPHPR 387
LIHGL + P L PL+ +P PR
Sbjct: 299 LIHGLQGASEPPPPLPPLAGVLPRAAQPR 327
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 106 bits (264), Expect = 4e-23
Identities = 108/383 (28%), Positives = 156/383 (40%), Gaps = 73/383 (19%)
Query: 18 SSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPSSPISVTMEPPEPHL 77
+SA+ G+ G + L +A +A + + T+ PS P S+ EPP
Sbjct: 35 ASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLG-EPP---- 89
Query: 78 VADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRT 137
LH PPPP AAP P P Q P P PPPP S+AS P+
Sbjct: 90 ----------LH----PPPPQAAPPAPQPPQPAPQPPAPTPAAPPPP-----SSASPPQN 130
Query: 138 STSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDK 197
++++ P A A S ++SP V + P +++ TK K
Sbjct: 131 ASNN-----------PTPANAAKSPLLNSP---------TVAKQIFPWMKESRQNTK-QK 169
Query: 198 REDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYL 257
S S C G K SPP +A R ARTA++ QL +LE+ F +YL
Sbjct: 170 TSSSSSGESCAGDK------------SPPGQASSKR-ARTAYTSAQLVELEKEFHFNRYL 216
Query: 258 SVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 317
R+++A LNLT+ Q+K W+QNRR K+K+ L + G + + P Y
Sbjct: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGY 276
Query: 318 HPSLLGSMDSTTAAAAAAAMYS----SMYRTPPAPHPQLQRPLVP------RVLIHGLGP 367
S+ ++S + +S Y PPA +P P R G G
Sbjct: 277 LNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGA 336
Query: 368 GGQPALNPLSSPIP-----GTPH 385
GG P +P + + GTPH
Sbjct: 337 GGTPDYDPHAHGLQGNGSYGTPH 359
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 106 bits (264), Expect = 4e-23
Identities = 108/383 (28%), Positives = 156/383 (40%), Gaps = 73/383 (19%)
Query: 18 SSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPSSPISVTMEPPEPHL 77
+SA+ G+ G + L +A +A + + T+ PS P S+ EPP
Sbjct: 35 ASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLG-EPP---- 89
Query: 78 VADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRT 137
LH PPPP AAP P P Q P P PPPP S+AS P+
Sbjct: 90 ----------LH----PPPPQAAPPAPQPPQPAPQPPAPTPAAPPPP-----SSASPPQN 130
Query: 138 STSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDK 197
++++ P A A S ++SP V + P +++ TK K
Sbjct: 131 ASNN-----------PTPANAAKSPLLNSP---------TVAKQIFPWMKESRQNTK-QK 169
Query: 198 REDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYL 257
S S C G K SPP +A R ARTA++ QL +LE+ F +YL
Sbjct: 170 TSSSSSGESCAGDK------------SPPGQASSKR-ARTAYTSAQLVELEKEFHFNRYL 216
Query: 258 SVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 317
R+++A LNLT+ Q+K W+QNRR K+K+ L + G + + P Y
Sbjct: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGY 276
Query: 318 HPSLLGSMDSTTAAAAAAAMYS----SMYRTPPAPHPQLQRPLVP------RVLIHGLGP 367
S+ ++S + +S Y PPA +P P R G G
Sbjct: 277 LNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGA 336
Query: 368 GGQPALNPLSSPIP-----GTPH 385
GG P +P + + GTPH
Sbjct: 337 GGTPDYDPHAHGLQGNGSYGTPH 359
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 100 bits (250), Expect = 2e-21
Identities = 94/329 (28%), Positives = 137/329 (41%), Gaps = 75/329 (22%)
Query: 92 QQPPPPAAAPTQS---LQPLPQQQQPLPPQQPPPPP-----PQQLGSAASAPRTSTSSFL 143
Q PPPP AP +S ++ L PP +P PPP P +AA+A + +
Sbjct: 17 QPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGA 76
Query: 144 IKDILG----------------DSKPLAACAPYS----------TSVSSPHHTPKQE--- 174
++ G ++ A A Y T + H P+ E
Sbjct: 77 LEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASE 136
Query: 175 ----------SNAVHESFRPKLEQEDSKTKLDKREDSQ---SDIKCHGTKEEGD------ 215
S +S P L+ + +LD + + + +K+EG+
Sbjct: 137 KALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAA 196
Query: 216 -------------REITSSRESPPVR-AKKPRKARTAFSDHQLNQLERSFERQKYLSVQD 261
+ ESP + A + +K RT FS Q+ QLE +F+ ++YLS +
Sbjct: 197 GASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSE 256
Query: 262 RMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSL 321
R LAA+L+LT+TQVK W+QNRR KWKRQ A LE A +++A QR+ P YH +
Sbjct: 257 RAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE--AANLSHAAAQRIVRVPILYHEN- 313
Query: 322 LGSMDSTTAAAAAAAMYSSMYRTPPAPHP 350
S AAAAA A PHP
Sbjct: 314 --SAAEGAAAAAAGAPVPVSQPLLTFPHP 340
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 92.4 bits (228), Expect = 6e-19
Identities = 43/75 (57%), Positives = 53/75 (70%)
Query: 220 SSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTW 279
S E P R KKPR++RT F++ QL LE+ F++QKYLS DR+DLA +L LT QVKTW
Sbjct: 121 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW 180
Query: 280 YQNRRTKWKRQTAVG 294
YQNRR KWK+ G
Sbjct: 181 YQNRRMKWKKMVLKG 195
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 90.9 bits (224), Expect = 2e-18
Identities = 72/215 (33%), Positives = 92/215 (42%), Gaps = 52/215 (24%)
Query: 84 HHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQ------QPPPPPPQQLGSAASAPRT 137
HHHH HH QQ A Q+ LPQ P QP P +LGS+ +
Sbjct: 73 HHHHHHHHQQQQHQAL---QTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCS 129
Query: 138 STSSFLIKDILGDSKPL-AACAP--YSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK 194
++SS LG S P AACAP Y SP K+ K K
Sbjct: 130 NSSS------LGSSTPTGAACAPGDYGRQALSPAEAEKRSGG---------------KRK 168
Query: 195 LDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQ 254
D + + + K E+ S KPRK RTAF+ Q+ +LE F
Sbjct: 169 SDSSDSQEGNYKS---------EVNS----------KPRKERTAFTKEQIRELEAEFAHH 209
Query: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
YL+ R ++A L+LT+ QVK W+QNRR KWKR
Sbjct: 210 NYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 89.0 bits (219), Expect = 7e-18
Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 41/256 (16%)
Query: 93 QPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRTSTSSFLIKDILGDSK 152
QP P P QP PQQQQP P QPP P L A S L + G S
Sbjct: 91 QPQPSTPQPQPPPQPQPQQQQPQP--QPPAQPHLYLQRGACKTPPDGSLKLQEGSSGHSA 148
Query: 153 PLAA-CAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTK 211
L C +S+ P P ++ + S+ L +++ K ++ + SD+
Sbjct: 149 ALQVPCYAKESSLGEPELPPDSDTVGMDSSY---LSVKEAGVK-GPQDRASSDLP--SPL 202
Query: 212 EEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNL 271
E+ D E K R+ RT F+ +QL +LE+ F++ Y V R LA +L
Sbjct: 203 EKADSESNKG---------KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDL 253
Query: 272 TDTQVKTWYQNRRTKWKRQ--------------TAVGLELLAEAGNYSALQRMFPSPYFY 317
T+ +V+ W+QNRR KW+++ TA L LL A NY+ +Q
Sbjct: 254 TEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQ--------- 304
Query: 318 HPSLLGSMDSTTAAAA 333
+PS LG+ + + A
Sbjct: 305 NPSWLGNNGAASPVPA 320
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 87.8 bits (216), Expect = 1e-17
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290
+ +K RT FS Q+ QLE +F+ ++YLS +R LAA+L LT+TQVK W+QNRR KWKRQ
Sbjct: 202 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 261
Query: 291 TAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHP 350
A LE A + + QR+ P YH S + AA A + + PAP P
Sbjct: 262 LAAELE--AASLSPPGAQRLVRVPVLYHE----SPPAAAAAGPPATLPFPLAPAAPAPPP 315
Query: 351 QL 352
L
Sbjct: 316 PL 317
Score = 28.9 bits (63), Expect = 8.2
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 88 LHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPP 125
L+H P AA P +L PL P P PPPP
Sbjct: 285 LYHESPPAAAAAGPPATLP------FPLAPAAPAPPPP 316
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/65 (60%), Positives = 50/65 (76%)
Query: 225 PPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRR 284
P +AKK R++RT F++ QL LE+ FE+QKYLS DR+DLA +L L+ QVKTWYQNRR
Sbjct: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
Query: 285 TKWKR 289
KWK+
Sbjct: 195 MKWKK 199
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 84.3 bits (207), Expect = 2e-16
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 105 LQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSV 164
L P + LP +P P ++ + A + ++S +D + + A P +
Sbjct: 26 LDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASS----RDPVRQLETPDAAGPGAGQA 81
Query: 165 SSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-EEGD----RE 217
S + +E + RP+L + ++ L + D+ + G E+G R
Sbjct: 82 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRS 141
Query: 218 ITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
S SP R + KPR+ARTAF+ QL LE F +YLSV +R++LA +L+
Sbjct: 142 PPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLS 201
Query: 271 LTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302
LT+TQVK W+QNRRTKWK+Q G + A+ G
Sbjct: 202 LTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 232
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 82.8 bits (203), Expect = 5e-16
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%)
Query: 109 PQQQQPLPPQQPPPPPPQQLGSAASAP-RTSTSSFLIKDILGDSKPLAACAPYSTSVSSP 167
P ++ P P P P G+A + S+ F ++ ++ D KP +P +S
Sbjct: 13 PDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASA 72
Query: 168 HHTPKQ---ESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRES 224
T + + E+ P + +T K E+S+ +E G R S
Sbjct: 73 GATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAW--MQEPG-------RYS 123
Query: 225 PPVRAKKP-----------RKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTD 273
PP R P RK RT F+ QL LER F +++YLS+ +R + +++LNLT+
Sbjct: 124 PPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTE 183
Query: 274 TQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAA 333
TQVK W+QNRR K KR LE L A + M PS + + + + + A
Sbjct: 184 TQVKIWFQNRRAKAKRLQEAELEKLK-----MAAKPMLPSSFSLPFPISSPLQAASIYGA 238
Query: 334 AAAMYSSMYRTPP 346
+ + + PP
Sbjct: 239 SYPFHRPVLPIPP 251
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 82.8 bits (203), Expect = 5e-16
Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 12/104 (11%)
Query: 213 EGDREITSSR--------ESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMD 264
E +R T R +PP K +K RT+F+ Q+ +LE+ F RQKYL+ +R
Sbjct: 178 ESNRRYTKDRFTGHPYQNRTPP----KKKKPRTSFTRLQICELEKRFHRQKYLASAERAA 233
Query: 265 LAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQ 308
LA AL +TD QVKTW+QNRRTKW+RQTA E + N LQ
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQ 277
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 82.0 bits (201), Expect = 8e-16
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 17/141 (12%)
Query: 211 KEEGDREITSSRESPPVRAKKPR-------------KARTAFSDHQLNQLERSFERQKYL 257
KEE +R + + SP +++PR K RT FS Q+ QLE +F+ ++YL
Sbjct: 117 KEEKERLLPAGSPSPG--SERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYL 174
Query: 258 SVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 317
S +R LA++L LT+TQVKTW+QNRR KWKRQ + LE A +++ Q + P +
Sbjct: 175 SSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMA--HASAQTLVSMPLVF 232
Query: 318 HPSLLGSMDSTTAAAAAAAMY 338
S L + + A A +Y
Sbjct: 233 RDSSLLRVPVPRSLAFPAPLY 253
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 82.0 bits (201), Expect = 8e-16
Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 29/231 (12%)
Query: 119 QPPPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAV 178
+P P + G+A P +SFLI+DIL D S P P+ E
Sbjct: 6 EPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEP--- 62
Query: 179 HESFRPKLEQEDSKTKLDKR---EDSQSDIKCHGTKEEGDREITSSRESP-----PVRAK 230
E R + ++ + R E++++ + + G + S S P K
Sbjct: 63 -EGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPK 121
Query: 231 KPRK-ARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
+P+K +R AFS Q+ +LER F QKYLS +R LA L LT+TQVK W+QNRR K KR
Sbjct: 122 QPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181
Query: 290 QTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSS 340
+ +L +E G+ H SL + + A+ ++Y+S
Sbjct: 182 K-----QLSSELGDLEK-----------HSSLPALKEEAFSRASLVSVYNS 216
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 81.6 bits (200), Expect = 1e-15
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290
K +K RT+FS Q+ +LER F RQKYL+ +R LA AL +TD QVKTW+QNRRTKW+RQ
Sbjct: 156 KRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 215
Query: 291 TA 292
TA
Sbjct: 216 TA 217
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.3 bits (199), Expect = 1e-15
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 156 ACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-E 212
A P + S + +E + RP+L + ++ L + D+ + G E
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCE 154
Query: 213 EGD----REITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQD 261
+G R S SP R + KPR+ARTAF+ QL LE F +YLSV +
Sbjct: 155 DGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCE 214
Query: 262 RMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302
R++LA +L+LT+TQVK W+QNRRTKWK+Q G + A+ G
Sbjct: 215 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 254
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 81.3 bits (199), Expect = 1e-15
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 228 RAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKW 287
++ KPR+ARTAF+ QL LE F+ +YLSV +R++LA +L+LT+TQVK W+QNRRTKW
Sbjct: 658 KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 717
Query: 288 KRQ 290
K+Q
Sbjct: 718 KKQ 720
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.3 bits (199), Expect = 1e-15
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 156 ACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-E 212
A P + S + +E + RP+L + ++ L + D+ + G E
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCE 154
Query: 213 EGD----REITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQD 261
+G R S SP R + KPR+ARTAF+ QL LE F +YLSV +
Sbjct: 155 DGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCE 214
Query: 262 RMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302
R++LA +L+LT+TQVK W+QNRRTKWK+Q G + A+ G
Sbjct: 215 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 254
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 81.3 bits (199), Expect = 1e-15
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 228 RAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKW 287
++ KPR+ARTAF+ QL LE F+ +YLSV +R++LA +L+LT+TQVK W+QNRRTKW
Sbjct: 93 KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 152
Query: 288 KRQ 290
K+Q
Sbjct: 153 KKQ 155
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 37 EARTADFRSQATPSPCSEIDTVGTAPSS----PISVTMEPPEPHLV---ADATQHHHHLH 89
+AR + +++ P P S+ T P+S P + P +L+ DA +H L
Sbjct: 554 KARPSSSQTKPAPQPQSKPQAPSTLPTSNPIYPYPDARKHPASNLIYPHPDARKHPSSLG 613
Query: 90 HSQQPPPPAAAPTQSLQPLPQ 110
HS PP A S L +
Sbjct: 614 HSSHSPPAALRANLSQSALDE 634
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.3 bits (199), Expect = 1e-15
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 156 ACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-E 212
A P + S + +E + RP+L + ++ L + D+ + G E
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCE 154
Query: 213 EGD----REITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQD 261
+G R S SP R + KPR+ARTAF+ QL LE F +YLSV +
Sbjct: 155 DGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCE 214
Query: 262 RMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302
R++LA +L+LT+TQVK W+QNRRTKWK+Q G + A+ G
Sbjct: 215 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 254
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 81.3 bits (199), Expect = 1e-15
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 228 RAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKW 287
++ KPR+ARTAF+ QL LE F+ +YLSV +R++LA +L+LT+TQVK W+QNRRTKW
Sbjct: 255 KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 314
Query: 288 KRQ 290
K+Q
Sbjct: 315 KKQ 317
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 80.9 bits (198), Expect = 2e-15
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290
K +K RT+FS Q+ +LE+ F RQKYL+ +R LA +L +TD QVKTW+QNRRTKW+RQ
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
Query: 291 TA------------VGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDS 327
TA + L+L +A S + P P H S L ++ +
Sbjct: 225 TAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQN 273
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 80.5 bits (197), Expect = 2e-15
Identities = 82/285 (28%), Positives = 119/285 (41%), Gaps = 47/285 (16%)
Query: 24 SPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPSSPISVTM------EPPE--- 74
+P + PL A A F + T + C+ + G A S +++T EPP+
Sbjct: 62 APAPLPAGLPPL--APLASFAGRLTNTFCAGL---GQAVPSMVALTTALPSFAEPPDAFY 116
Query: 75 -PHLVADATQHHHHLHHSQQPPPPAAAPTQSLQP---LPQQQQPLPPQQPPPPPPQQLGS 130
P +A A P P P L+ LP +++ P PPPPPP +
Sbjct: 117 GPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEP--PPPPPPHFSET 174
Query: 131 AASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQED 190
S P K D + L A S P + ++E + +S +
Sbjct: 175 FPSLPAEG------KVYSSDEEKLEA------SAGDPAGSEQEEEGSGGDS--------E 214
Query: 191 SKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAK------KPRKARTAFSDHQL 244
LD + K +G T + E PV A K R+ RTAF+ QL
Sbjct: 215 DDGFLDSSAGGPGALLGPKPKLKGSLG-TGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQL 273
Query: 245 NQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
+LE+ F +KYLS+ +R +A AL L++ QVK W+QNRR KWKR
Sbjct: 274 LELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/232 (29%), Positives = 97/232 (41%), Gaps = 29/232 (12%)
Query: 162 TSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSS 221
T S P +E HE EQ+ + L K E Q + K+E + ++
Sbjct: 63 TEGSVPSDDQDREGGGGHEP-----EQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTT 117
Query: 222 RESP-----------PVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
E P P ++ R+ RTAF+ QL +LE F+ +Y V R LAA LN
Sbjct: 118 VEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLN 177
Query: 271 LTDTQVKTWYQNRRTKWKR-QTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTT 329
LT+ +V+ W+QNRR KWKR Q + L A A L Y+ P+L
Sbjct: 178 LTEDRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPAL-------- 229
Query: 330 AAAAAAAMYSSMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQPALNPLSSPIP 381
A + + R P P P P+ PR + + P A P +P+P
Sbjct: 230 DPALCVHLVPQLPRPPVLPVP----PMPPRPPMVPMPPRPPIAPMPPMAPVP 277
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 79.3 bits (194), Expect = 5e-15
Identities = 75/255 (29%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 116 PPQQPPPPPPQQLG------------SAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS 163
PP Q P P G S +S SSF S+PL PY S
Sbjct: 25 PPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSF--------SRPLGY--PYVNS 74
Query: 164 VSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRE 223
VSS +P S + + + ED +D + E G+
Sbjct: 75 VSSHASSPYISSVQSYPG--------SASLAQSRLEDPGADSEKSTVVEGGEVRFNG--- 123
Query: 224 SPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNR 283
+ KK RK RT +S QL L R F++ +YL++ +R +LAA+L LT TQVK W+QN+
Sbjct: 124 ----KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNK 179
Query: 284 RTKWK---RQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSS 340
R+K+K +Q LE A A + P P ++P+ S A + Y+S
Sbjct: 180 RSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWNPNSSSGKGSGGNAGSYIPSYTS 239
Query: 341 MYRTPPAPHPQLQRP 355
Y P A +Q+P
Sbjct: 240 WY--PSAHQEAMQQP 252
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 79.3 bits (194), Expect = 5e-15
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 14/128 (10%)
Query: 230 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
+K R+ RT F+ +QL +LER+F++ Y V R +LA L+LT+ +V+ W+QNRR KW++
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 290 QTAVGLEL----LAEAGNYSALQRMFP----SPY-FYHPSLLGSMDSTTAAAAAAAMYSS 340
+ G + L G SA + P SP+ +HP+L + T AAAAAAA + S
Sbjct: 386 REKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAW--TAAAAAAAAAFPS 443
Query: 341 MYRTPPAP 348
+ PP P
Sbjct: 444 L---PPPP 448
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 79.3 bits (194), Expect = 5e-15
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 226 PVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRT 285
P + + RKART FSD QL+ LE+ FE Q+YLS +R++LA AL+L++TQVKTW+QNRR
Sbjct: 104 PGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRM 163
Query: 286 KWKRQ 290
K K+Q
Sbjct: 164 KHKKQ 168
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 77.8 bits (190), Expect = 2e-14
Identities = 85/325 (26%), Positives = 128/325 (39%), Gaps = 60/325 (18%)
Query: 1 MTMEGASGSS--FGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTV 58
M M+ GSS F ID+++ S SPG F G +R P P
Sbjct: 10 MMMQRPLGSSTAFSIDSLIGSPPQPSPG----HFVYTGYPMFMPYRPVVLPPP------- 58
Query: 59 GTAPSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPL---------- 108
P P ++ +P L H HH Q P P + Q +
Sbjct: 59 ---PPPPPALPQAALQPAL---PPAHPHH----QIPSLPTGFCSSLAQGMALTSTLMATL 108
Query: 109 -------PQQQQPLPPQQPPPPPPQQLGS-----AASAPRTSTSSFLIKDILGDSKPLAA 156
PQ Q+ ++ P P G+ A A FL K+ G +A
Sbjct: 109 PGGFSASPQHQEAAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFLAKE--GSLLAFSA 166
Query: 157 CAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLD-KREDSQSDIKCHGTKEEGD 215
S+ ++ + V + + K E ++ +D +D+ + H ++ G
Sbjct: 167 AETVQASLVGAVRGQGKDESKVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGH 226
Query: 216 REITSSRESPP--------VRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAA 267
+ E+PP K R+ RTAF+ QL +LE+ F +KYLS+ +R +A
Sbjct: 227 ----ALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAH 282
Query: 268 ALNLTDTQVKTWYQNRRTKWKRQTA 292
AL L++ QVK W+QNRR KWKR A
Sbjct: 283 ALKLSEVQVKIWFQNRRAKWKRVKA 307
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 77.4 bits (189), Expect = 2e-14
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 211 KEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
KEE + E+ P KK RK RT +S +QL L+R F++ +YL++ +R +LAA L
Sbjct: 112 KEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLG 167
Query: 271 LTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTA 330
LT TQVK W+QNRR+K+K+ G L + N S P P+L + +T
Sbjct: 168 LTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPP---SPALWDTSSHSTP 224
Query: 331 AAAAAAM-----YS-----------SMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQP 371
A A + + YS S Y P LQ+ +H PG P
Sbjct: 225 APARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,681,453
Number of Sequences: 37866
Number of extensions: 1278725
Number of successful extensions: 26159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 1024
Number of HSP's that attempted gapping in prelim test: 11079
Number of HSP's gapped (non-prelim): 8908
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.