TSR1 27231

Name: TSR1	Sequence: fasta or formatted (804aa)		NCBI GI: 39780588
Description: TSR1, 20S rRNA accumulation		Referenced in: Ribosomes Small RNAs in RNA Processing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 47 2 C cysteine 0.9 7 1 D aspartate 6.3 51 2 E glutamate 8.2 66 5 F phenylalanine 4.5 36 2 G glycine 6.5 52 2 H histidine 3.2 26 1 I isoleucine 2.9 23 1 K lysine 8.1 65 2 L leucine 9.8 79 4 M methionine 3.4 27 1 N asparagine 2.2 18 2 P proline 6.0 48 2 Q glutamine 5.2 42 2 R arginine 6.2 50 2 S serine 5.5 44 2 T threonine 4.6 37 1 V valine 7.1 57 2 W tryptophan 1.2 10 1 Y tyrosine 2.4 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TSR1, 20S rRNA accumulation BMS1 0.054 BMS1-like, ribosome assembly protein LOC100293763 0.026 PREDICTED: similar to BMS1-like, ribosome assembly ... CDC2L2 0.014 cell division cycle 2-like 2 isoform 4 CDC2L2 0.014 cell division cycle 2-like 2 isoform 1 CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... SLC24A1 0.014 solute carrier family 24 (sodium/potassium/calcium ex... C12orf12 0.011 hypothetical protein LOC196477 WDR87 0.011 NYD-SP11 protein SMTNL1 0.010 smoothelin-like 1 ANP32B 0.010 acidic (leucine-rich) nuclear phosphoprotein 32 famil... PELP1 0.009 proline, glutamic acid and leucine rich protein 1 [... KRI1 0.009 KRI1 homolog CDC2L1 0.009 cell division cycle 2-like 1 (PITSLRE proteins) isof... KIAA1429 0.009 hypothetical protein LOC25962 isoform 1 KIAA1429 0.009 hypothetical protein LOC25962 isoform 2 EIF5B 0.009 eukaryotic translation initiation factor 5B MYT1 0.009 myelin transcription factor 1 LOC728792 0.009 PREDICTED: hypothetical protein LOC283685 0.009 PREDICTED: golgi autoantigen, golgin subfamily a-li... TRIM44 0.009 DIPB protein MDM2 0.009 mouse double minute 2 homolog isoform MDM2h MDM2 0.009 mouse double minute 2 homolog isoform MDM2f MDM2 0.009 mouse double minute 2 homolog isoform MDM2 HTATSF1 0.009 HIV-1 Tat specific factor 1 HTATSF1 0.009 HIV-1 Tat specific factor 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.