Guide to the Human Genome
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Name: TPRG1L Sequence: fasta or formatted (272aa) NCBI GI: 38679907
Description:

tumor protein p63 regulated 1-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         19           2
 C cysteine            1.1          3           1
 D aspartate           3.3          9           1
 E glutamate           7.7         21           2
 F phenylalanine       4.0         11           1
 G glycine             8.8         24           3
 H histidine           1.1          3           1
 I isoleucine          5.9         16           1
 K lysine              4.8         13           2
 L leucine             9.6         26           2
 M methionine          1.5          4           1
 N asparagine          3.7         10           2
 P proline             6.2         17           2
 Q glutamine           5.5         15           2
 R arginine            6.2         17           2
 S serine              6.2         17           1
 T threonine           5.1         14           1
 V valine              7.7         21           3
 W tryptophan          2.2          6           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein p63 regulated 1-like 
TPRG1                 0.421   tumor protein p63 regulated 1 
GLCCI1                0.019   glucocorticoid induced transcript 1 
FOXD2                 0.019   forkhead box D2 
RELL2                 0.013   RELT-like 2 
RELL2                 0.013   RELT-like 2 
UBE2Q1                0.013   ubiquitin-conjugating enzyme E2Q 
PRDM13                0.011   PR domain containing 13 
NRG3                  0.010   neuregulin 3 
C21orf66              0.010   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.010   GC-rich sequence DNA-binding factor candidate isofor...
EVX2                  0.010   even-skipped homeobox 2 
PHOX2B                0.010   paired-like homeobox 2b 
PNN                   0.010   pinin, desmosome associated protein 
NKX1-1                0.010   PREDICTED: NK1 homeobox 1 
LOC728767             0.010   PREDICTED: hypothetical protein 
NKX1-1                0.010   PREDICTED: NK1 homeobox 1 
LOC728767             0.010   PREDICTED: hypothetical protein 
NKX1-1                0.010   PREDICTED: HPX-153 homeobox 
KHSRP                 0.010   KH-type splicing regulatory protein 
NHLH1                 0.010   nescient helix loop helix 1 
INTS3                 0.010   integrator complex subunit 3 
LOC100130897          0.008   PREDICTED: hypothetical protein 
LOC100130897          0.008   PREDICTED: hypothetical protein 
SHOX2                 0.008   short stature homeobox 2 isoform a 
RAX                   0.008   retina and anterior neural fold homeobox 
TAL1                  0.008   T-cell acute lymphocytic leukemia 1 
GRASP                 0.008   GRP1 (general receptor for phosphoinositides 1)-asso...
C16orf42              0.008   hypothetical protein LOC115939 
LOC729956             0.006   hypothetical protein LOC729956 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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