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Search of human proteins with 38455394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens] 227 2e-60
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 64 2e-11
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 64 2e-11
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 64 2e-11
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 64 2e-11
gi|8393116 chromatin accessibility complex 1 [Homo sapiens] 57 4e-09
gi|18426973 DR1-associated protein 1 [Homo sapiens] 45 9e-06
gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens] 36 0.006
gi|148596936 hypoxia-inducible factor 1, alpha subunit inhibitor... 32 0.11
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens] 31 0.18
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 31 0.18
gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens] 31 0.24
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens] 31 0.24
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 31 0.24
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 31 0.24
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 30 0.31
gi|91208420 bassoon protein [Homo sapiens] 30 0.41
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 30 0.53
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 30 0.53
gi|153070260 myristoylated alanine-rich protein kinase C substra... 30 0.53
gi|115511036 alpha-kinase 3 [Homo sapiens] 30 0.53
gi|24497589 aristaless related homeobox [Homo sapiens] 29 0.70
gi|60097902 filaggrin [Homo sapiens] 29 0.91
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 29 0.91
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 29 0.91
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 29 0.91
gi|24308368 EP300 interacting inhibitor of differentiation 2B [H... 29 0.91
gi|169167761 PREDICTED: similar to HIStone family member (his-72... 28 1.2
gi|88987392 PREDICTED: similar to HIStone family member (his-72)... 28 1.2
gi|41147170 PREDICTED: similar to HIStone family member (his-72)... 28 1.2
>gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens]
Length = 117
Score = 227 bits (578), Expect = 2e-60
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MAAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAG 60
MAAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAG
Sbjct: 1 MAAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAG 60
Query: 61 QEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEAVDEFAFLEGTLD 117
QEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEAVDEFAFLEGTLD
Sbjct: 61 QEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEAVDEFAFLEGTLD 117
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 64.3 bits (155), Expect = 2e-11
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 32 SVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKR 91
+V R+ LPLAR+K ++K D DV + EA + A+AA++F+ + A+ + KR
Sbjct: 34 TVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 93
Query: 92 KTLQRRDLDNAIEAVDEFAFL 112
+TLQR D+ AI D+F FL
Sbjct: 94 RTLQRNDIAMAITKFDQFDFL 114
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 64.3 bits (155), Expect = 2e-11
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 32 SVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKR 91
+V R+ LPLAR+K ++K D DV + EA + A+AA++F+ + A+ + KR
Sbjct: 34 TVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 93
Query: 92 KTLQRRDLDNAIEAVDEFAFL 112
+TLQR D+ AI D+F FL
Sbjct: 94 RTLQRNDIAMAITKFDQFDFL 114
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 64.3 bits (155), Expect = 2e-11
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 32 SVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKR 91
+V R+ LPLAR+K ++K D DV + EA + A+AA++F+ + A+ + KR
Sbjct: 34 TVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 93
Query: 92 KTLQRRDLDNAIEAVDEFAFL 112
+TLQR D+ AI D+F FL
Sbjct: 94 RTLQRNDIAMAITKFDQFDFL 114
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 64.3 bits (155), Expect = 2e-11
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 32 SVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKR 91
+V R+ LPLAR+K ++K D DV + EA + A+AA++F+ + A+ + KR
Sbjct: 34 TVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 93
Query: 92 KTLQRRDLDNAIEAVDEFAFL 112
+TLQR D+ AI D+F FL
Sbjct: 94 RTLQRNDIAMAITKFDQFDFL 114
>gi|8393116 chromatin accessibility complex 1 [Homo sapiens]
Length = 131
Score = 56.6 bits (135), Expect = 4e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 37 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96
RL LPL+R++ ++K+ P+V+ QEA+ + A+A ELFV+ +A +Y ++K L
Sbjct: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
Query: 97 RDLDNAIEAVDEFAFLEGTL 116
DL N + + F FL L
Sbjct: 75 SDLANTAQQSETFQFLADIL 94
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 45.4 bits (106), Expect = 9e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 39 SRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRD 98
+R P AR+K +++ D ++ I++RA ELF+E++ K A Q KT+
Sbjct: 10 ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 69
Query: 99 LDNAIEAVDEFAFLE 113
L IE +F FL+
Sbjct: 70 LKQCIELEQQFDFLK 84
>gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens]
Length = 147
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 41 LPLARVKALVK-ADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDL 99
LP A + ++K A PD +EA ++RAA +FV A A +GKRKTL D+
Sbjct: 10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDV 69
Query: 100 DNAIEAVD 107
+A+E ++
Sbjct: 70 LSAMEEME 77
>gi|148596936 hypoxia-inducible factor 1, alpha subunit inhibitor
[Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLA--RVKALVKADPDVTLA 59
A A A+GSG PREE G G A S P + RL + R + L++ + V L
Sbjct: 6 AEAVASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLT 65
Query: 60 GQEAIF 65
++
Sbjct: 66 DTNLVY 71
>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
Length = 951
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 14 EEEGPAGEA-----AASQPQAPTSVPGARLSRLPLARVKALVKADPDV--TLAGQEAIFI 66
++EGP E + P APT+ P A SR P + KA P T A Q+ F+
Sbjct: 438 QDEGPEDEEDEVPKKQNSPVAPTAQPKAPPSRTPQSGSAPTAKAPPKATSTRAQQQLAFL 497
Query: 67 LARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAIEA 105
R +L + + K Q + L+ +EA
Sbjct: 498 EGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEA 536
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 2 AAAAAAGSGTPREEEGPAGE----AAASQPQAPTSVPGAR----LSRLP 42
AAAAAA S TP E+E P E AAA + + T G LSRLP
Sbjct: 211 AAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLP 259
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 1 MAAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAG 60
M A A G +GP+GE AA+ A + A + + + +G
Sbjct: 189 MVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASG 248
Query: 61 QEAIFILAR 69
+E++ L+R
Sbjct: 249 EESLGFLSR 257
>gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens]
Length = 279
Score = 30.8 bits (68), Expect = 0.24
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1 MAAAAAAGSGTPREEEGPAGEAAAS--QPQAPT-SVPGARLSRLP-LARVKALVKADPDV 56
M AA AA G EGPAG + +P +P + PGARL RLP V+A
Sbjct: 10 MRAAVAASVGL---SEGPAGSRSGRLFRPPSPAPAAPGARLLRLPGSGAVQAASPERAGW 66
Query: 57 TLAGQEAIFILARAAELFVETIAKDAYCCA 86
T A + A+ L A + V T CA
Sbjct: 67 TEALRAAVAELRAGAVVAVPTDTLYGLACA 96
>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADP 54
++A+ + P+ E P+ AAS+ Q + P R S +PL +AL A P
Sbjct: 969 SSASEQETQAPKPEASPSMSVAASEQQEDMARPPQRPSAVPLPTTQALALAGP 1021
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPL 43
AAA+AA SG P P+GE A Q P S G +RL L
Sbjct: 13 AAASAAASGGP--SAAPSGENEAESRQGPDSERGGEAARLNL 52
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPL 43
AAA+AA SG P P+GE A Q P S G +RL L
Sbjct: 13 AAASAAASGGP--SAAPSGENEAESRQGPDSERGGEAARLNL 52
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 MAAAAAAGSGTPREEEGPA-----GEAAASQPQAPTSVPGARLSRLPLARVKALVKADPD 55
+A + AG TP+ + GPA AA+ P AP R+SR P V D
Sbjct: 632 VAKTSPAGPKTPKAQAGPAATVSKAPAASKAPAAPKVPVTPRVSRAPKTPAAQKVPTDAG 691
Query: 56 VTL 58
TL
Sbjct: 692 PTL 694
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAGQ 61
AAA A G+G P E P G AA + PT+ P A +K A LAGQ
Sbjct: 2286 AAAKAPGAGGPSRPEMPVG--AAREEPLPTTTPAA---------IKEAAGAPAPAPLAGQ 2334
Query: 62 E 62
+
Sbjct: 2335 K 2335
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 29.6 bits (65), Expect = 0.53
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 2 AAAAAAGSGTPREEEGPAGE-----AAASQPQA------PTSVPGARLSRLPLARVKALV 50
AAAAAA + PA AA QP A P S P A + P A +
Sbjct: 100 AAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAA--PPASAATIA 157
Query: 51 KADPDVTLAGQEAIFILARAAELFVETIAKDAYCCA 86
A +A + + A+ L +T +K Y CA
Sbjct: 158 AAAATAVVAPTSTVAVAPVASALEKKTKSKGPYICA 193
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 29.6 bits (65), Expect = 0.53
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 2 AAAAAAGSGTPREEEGPAGE-----AAASQPQA------PTSVPGARLSRLPLARVKALV 50
AAAAAA + PA AA QP A P S P A + P A +
Sbjct: 100 AAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAA--PPASAATIA 157
Query: 51 KADPDVTLAGQEAIFILARAAELFVETIAKDAYCCA 86
A +A + + A+ L +T +K Y CA
Sbjct: 158 AAAATAVVAPTSTVAVAPVASALEKKTKSKGPYICA 193
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLS 39
AAAA +P E+E PA E A++P +PT+ G S
Sbjct: 92 AAAAPEAGASPVEKEAPA-EGEAAEPGSPTAAEGEAAS 128
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 AAAAAGSGTPREEE-GPAGEAAASQPQAPTSVP 34
A +AAG G P E+E PA E AA+ + + P
Sbjct: 281 APSAAGPGAPPEQEAAPAEEPAAAAASSACAAP 313
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 1 MAAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGARLSRLPLARVKAL 49
MA G +GP+ E+ A +P PG L+ LP A + L
Sbjct: 1313 MAGRLGEAGGQAAPGQGPSAESIAQEPSQEEKFPGEALTGLPAATPEEL 1361
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGAR 37
AAAAAA + GP GEA P PT+ PG R
Sbjct: 105 AAAAAAAAAAATATAGPRGEA--PPPPPPTARPGER 138
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGAR 37
+A ++ SGTP E G+AA+S QA +S PG R
Sbjct: 998 SADSSRQSGTPHAETSSGGQAASSHEQARSS-PGER 1032
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 2 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGAR 37
+A ++ SGT E G+AA+SQ QA +S PG R
Sbjct: 1646 SAESSRQSGTRHAETSSGGQAASSQEQARSS-PGER 1680
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 2 AAAAAAGSGTPREEEGPA-GEAAASQPQAPTSVPGARLSRLP 42
AAAA+A SG+P EG A GE ++ P A S + + P
Sbjct: 10 AAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSP 51
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 8 GSGTPREEEGPAGEAAASQPQAPTSVPG 35
G+G PR + GP G+ P+ P PG
Sbjct: 529 GTGGPRGQPGPKGDIGPPGPEGPPGSPG 556
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 15 EEGPAGEAAASQPQAPTSVPGARLSRLPLARV 46
++GP+G+ AAS P P+ LS PL +V
Sbjct: 1479 DDGPSGKNAASSPSVPSHPSVLSLSTAPLVQV 1510
>gi|24308368 EP300 interacting inhibitor of differentiation 2B
[Homo sapiens]
Length = 161
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 6 AAGSGTPREE--EGPAGEAAASQPQAPTSVPGARLSRLP 42
A G G +E EGP EAA S + P VPG S +P
Sbjct: 35 AVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVP 73
>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 38 LSRLPLAR-VKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 95
L +LP R V+ + +A PD+ AI L A+E ++ + +D CA +R T+
Sbjct: 63 LRKLPFQRLVREIAQAISPDLRFQSA-AIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
Query: 96 RRDLDNA 102
RD+ A
Sbjct: 122 PRDMQLA 128
>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 38 LSRLPLAR-VKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 95
L +LP R V+ + +A PD+ AI L A+E ++ + +D CA +R T+
Sbjct: 63 LRKLPFQRLVREIAQAISPDLRFQSA-AIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
Query: 96 RRDLDNA 102
RD+ A
Sbjct: 122 PRDMQLA 128
>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 38 LSRLPLAR-VKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 95
L +LP R V+ + +A PD+ AI L A+E ++ + +D CA +R T+
Sbjct: 63 LRKLPFQRLVREIAQAISPDLRFQSA-AIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
Query: 96 RRDLDNA 102
RD+ A
Sbjct: 122 PRDMQLA 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,247,067
Number of Sequences: 37866
Number of extensions: 173150
Number of successful extensions: 2062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 399
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.