Guide to the Human Genome
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Name: CHRAC1 Sequence: fasta or formatted (131aa) NCBI GI: 8393116
Description:

chromatin accessibility complex 1

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         10           1
 C cysteine            0.8          1           1
 D aspartate           7.6         10           1
 E glutamate          10.7         14           2
 F phenylalanine       2.3          3           1
 G glycine             3.8          5           2
 H histidine           1.5          2           1
 I isoleucine          4.6          6           1
 K lysine              9.9         13           2
 L leucine            10.7         14           1
 M methionine          2.3          3           1
 N asparagine          3.8          5           1
 P proline             2.3          3           1
 Q glutamine           4.6          6           2
 R arginine            3.8          5           1
 S serine              9.9         13           2
 T threonine           4.6          6           1
 V valine              6.1          8           3
 W tryptophan          0.0          0           0
 Y tyrosine            3.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromatin accessibility complex 1 
NFYC                  0.148   nuclear transcription factor Y, gamma isoform 5 [Ho...
NFYC                  0.148   nuclear transcription factor Y, gamma isoform 1 [Ho...
NFYC                  0.148   nuclear transcription factor Y, gamma isoform 3 [Ho...
NFYC                  0.148   nuclear transcription factor Y, gamma isoform 2 [Hom...
POLE4                 0.139   DNA-directed DNA polymerase epsilon 4 
DRAP1                 0.065   DR1-associated protein 1 
POLE3                 0.065   DNA-directed DNA polymerase epsilon 3 
BAZ2B                 0.043   bromodomain adjacent to zinc finger domain, 2B [Homo...
SMARCA2               0.039   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.035   SWI/SNF-related matrix-associated actin-dependent re...
USP9X                 0.035   ubiquitin specific protease 9, X-linked isoform 4 [...
USP9X                 0.035   ubiquitin specific protease 9, X-linked isoform 3 [...
ANP32E                0.030   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.030   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.030   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
CHD6                  0.030   chromodomain helicase DNA binding protein 6 
FBXO3                 0.030   F-box only protein 3 isoform 1 
HMGB1                 0.026   high-mobility group box 1 
ACIN1                 0.026   apoptotic chromatin condensation inducer 1 
DNTTIP2               0.026   deoxynucleotidyltransferase, terminal, interacting p...
LOC645490             0.026   PREDICTED: similar to hCG1991922 
SP100                 0.026   nuclear antigen Sp100 isoform 2 
HMGB1L1               0.026   high-mobility group box 1-like 1 
LOC645490             0.026   PREDICTED: similar to hCG1991922 
LOC645490             0.026   PREDICTED: similar to hCG1991922 
SAMSN1                0.026   SAM domain, SH3 domain and nuclear localization sign...
VPS4A                 0.022   vacuolar protein sorting factor 4A 
IBSP                  0.022   integrin-binding sialoprotein precursor 
USP9Y                 0.022   ubiquitin specific protease 9, Y-linked 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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