Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HIF1AN Sequence: fasta or formatted (349aa) NCBI GI: 148596936
Description:

hypoxia-inducible factor 1, alpha subunit inhibitor

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Oxygen Sensing and Hemoglobin
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         19           2
 C cysteine            0.9          3           1
 D aspartate           4.6         16           1
 E glutamate           8.3         29           2
 F phenylalanine       4.9         17           2
 G glycine             7.4         26           2
 H histidine           2.3          8           2
 I isoleucine          4.9         17           1
 K lysine              5.2         18           2
 L leucine             8.3         29           3
 M methionine          2.6          9           1
 N asparagine          6.6         23           1
 P proline             6.9         24           2
 Q glutamine           6.0         21           2
 R arginine            4.9         17           1
 S serine              4.0         14           1
 T threonine           4.0         14           1
 V valine              5.4         19           2
 W tryptophan          2.3          8           2
 Y tyrosine            5.2         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypoxia-inducible factor 1, alpha subunit inhibitor... 
JMJD5                 0.097   jumonji domain containing 5 isoform 1 
JMJD5                 0.097   jumonji domain containing 5 isoform 2 
HSPBAP1               0.086   Hspb associated protein 1 
C2orf60               0.069   hypothetical protein LOC129450 
JMJD7                 0.049   jumonji domain containing 7 
JMJD4                 0.020   jumonji domain containing 4 isoform 2 
JMJD4                 0.017   jumonji domain containing 4 isoform 1 
JMJD6                 0.011   jumonji domain containing 6 isoform 1 
JMJD6                 0.011   jumonji domain containing 6 isoform 2 
WNK2                  0.011   WNK lysine deficient protein kinase 2 
JMJD8                 0.011   jumonji domain containing 8 
JMJD7-PLA2G4B         0.011   JMJD7-PLA2G4B protein 
POLE4                 0.010   DNA-directed DNA polymerase epsilon 4 
PKP4                  0.010   plakophilin 4 isoform b 
PKP4                  0.010   plakophilin 4 isoform a 
HECW1                 0.008   NEDD4-like ubiquitin-protein ligase 1 
CENPV                 0.007   proline rich 6 
C14orf169             0.007   chromosome 14 open reading frame 169 
MINA                  0.006   MYC induced nuclear antigen isoform b 
MINA                  0.006   MYC induced nuclear antigen isoform a 
MINA                  0.006   MYC induced nuclear antigen isoform a 
SIK2                  0.004   SNF1-like kinase 2 
GIMAP8                0.004   GTPase, IMAP family member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press