Guide to the Human Genome
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Name: LOC391769 Sequence: fasta or formatted (136aa) NCBI GI: 41147170
Description:

PREDICTED: similar to HIStone family member (his-72)

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt mRNA [136aa] PREDICTED: similar to HIStone family member (his-72)
alt mRNA [136aa] PREDICTED: similar to HIStone family member (his-72)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         20           2
 C cysteine            0.7          1           1
 D aspartate           2.2          3           1
 E glutamate           4.4          6           1
 F phenylalanine       2.2          3           1
 G glycine             4.4          6           2
 H histidine           1.5          2           1
 I isoleucine          5.1          7           1
 K lysine              8.1         11           2
 L leucine            11.0         15           3
 M methionine          2.2          3           1
 N asparagine          0.7          1           1
 P proline             7.4         10           2
 Q glutamine           7.4         10           1
 R arginine           13.2         18           2
 S serine              2.9          4           1
 T threonine           6.6          9           1
 V valine              2.2          3           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to HIStone family member (his-72)... 
LOC391769             1.000   PREDICTED: similar to HIStone family member (his-72...
LOC391769             1.000   PREDICTED: similar to HIStone family member (his-72)...
LOC340096             0.955   PREDICTED: similar to hCG1642908 
H3F3B                 0.794   H3 histone, family 3B 
H3F3A                 0.794   H3 histone, family 3A 
HIST2H3A              0.774   histone cluster 2, H3a 
HIST2H3C              0.774   histone cluster 2, H3c 
HIST2H3D              0.774   histone cluster 2, H3d 
HIST1H3E              0.765   histone cluster 1, H3e 
HIST1H3H              0.765   histone cluster 1, H3h 
HIST1H3I              0.765   histone cluster 1, H3i 
HIST1H3A              0.765   histone cluster 1, H3a 
HIST1H3F              0.765   histone cluster 1, H3f 
HIST1H3D              0.765   histone cluster 1, H3d 
HIST1H3B              0.765   histone cluster 1, H3b 
HIST1H3J              0.765   histone cluster 1, H3j 
HIST1H3C              0.765   histone cluster 1, H3c 
HIST1H3G              0.765   H3 histone family, member H 
HIST3H3               0.745   histone cluster 3, H3 
LOC440093             0.737   histone H3-like 
LOC340096             0.691   PREDICTED: similar to hCG1642908 
LOC340096             0.691   PREDICTED: similar to hCG1642908 
LOC644950             0.634   PREDICTED: similar to histone H3.3B 
CENPA                 0.325   centromere protein A isoform a 
CENPA                 0.226   centromere protein A isoform b 
H2BFM                 0.041   PREDICTED: H2B histone family, member M 
H2BFM                 0.041   PREDICTED: H2B histone family, member M 
H2BFM                 0.033   PREDICTED: H2B histone family, member M 
CENPT                 0.025   centromere protein T 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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