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Search of human proteins with 38348292
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348292 coiled-coil domain containing 84 [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348292 coiled-coil domain containing 84 [Homo sapiens] 695 0.0
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 34 0.21
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 34 0.21
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 34 0.21
gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens] 34 0.21
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 33 0.27
gi|38044112 restin isoform b [Homo sapiens] 33 0.35
gi|4506751 restin isoform a [Homo sapiens] 33 0.35
gi|109148531 coiled-coil domain containing 98 [Homo sapiens] 33 0.46
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 0.60
gi|157785645 SPEG complex locus [Homo sapiens] 32 0.60
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 32 0.60
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 32 1.0
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 32 1.0
gi|163310749 LIM and calponin homology domains 1 isoform e [Homo... 32 1.0
gi|163310747 LIM and calponin homology domains 1 isoform d [Homo... 32 1.0
gi|163310745 LIM and calponin homology domains 1 isoform c [Homo... 32 1.0
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo... 32 1.0
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 32 1.0
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 1.3
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 1.3
gi|219521876 serum/glucocorticoid regulated kinase 1 isoform 2 [... 31 1.8
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 31 1.8
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 31 1.8
gi|15208660 tripartite motif protein 21 [Homo sapiens] 31 1.8
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa... 31 1.8
gi|219555700 leucine rich repeat containing 27 isoform a [Homo s... 31 1.8
gi|55741567 leucine rich repeat containing 27 isoform a [Homo sa... 31 1.8
gi|222352183 neural precursor cell expressed, developmentally do... 30 2.3
gi|21361472 neural precursor cell expressed, developmentally dow... 30 2.3
>gi|38348292 coiled-coil domain containing 84 [Homo sapiens]
Length = 332
Score = 695 bits (1793), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEH 60
MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEH
Sbjct: 1 MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEH 60
Query: 61 ERCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFL 120
ERCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFL
Sbjct: 61 ERCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFL 120
Query: 121 VTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAVPDPEE 180
VTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAVPDPEE
Sbjct: 121 VTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAVPDPEE 180
Query: 181 GSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQDIPGVGNIHSGA 240
GSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQDIPGVGNIHSGA
Sbjct: 181 GSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQDIPGVGNIHSGA 240
Query: 241 TPPWMIQDEEYIAGNQEIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSRTSAGWLPSF 300
TPPWMIQDEEYIAGNQEIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSRTSAGWLPSF
Sbjct: 241 TPPWMIQDEEYIAGNQEIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSRTSAGWLPSF 300
Query: 301 GRVWNNGRRWQSRHQFKTEAAAMKKQSHTEKS 332
GRVWNNGRRWQSRHQFKTEAAAMKKQSHTEKS
Sbjct: 301 GRVWNNGRRWQSRHQFKTEAAAMKKQSHTEKS 332
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 33.9 bits (76), Expect = 0.21
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 72 EVREHLSHGNLTVLYGGLL-------EHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQ 124
+V + GNL+ L +HLA+ E +K K E QMK K + +
Sbjct: 879 KVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKI--KSLVALLVETQMK-KLEIKLR 935
Query: 125 DYARFKKSMVKGLDSYEEKEDKVIK-------------EMAAQIREVEQSRQEVVRS--V 169
+ + M + ++ E + +++ EM A+ + +Q Q+ +
Sbjct: 936 HFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPA 995
Query: 170 LEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQD 229
L P + P P G++ P + G+ AS + P+ PP + G + + G Q
Sbjct: 996 LPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQ 1055
Query: 230 IPGVGNIHSGATPP 243
G GA PP
Sbjct: 1056 QQPAGAPQPGAVPP 1069
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 33.9 bits (76), Expect = 0.21
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 72 EVREHLSHGNLTVLYGGLL-------EHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQ 124
+V + GNL+ L +HLA+ E +K K E QMK K + +
Sbjct: 848 KVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKI--KSLVALLVETQMK-KLEIKLR 904
Query: 125 DYARFKKSMVKGLDSYEEKEDKVIK-------------EMAAQIREVEQSRQEVVRS--V 169
+ + M + ++ E + +++ EM A+ + +Q Q+ +
Sbjct: 905 HFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPA 964
Query: 170 LEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQD 229
L P + P P G++ P + G+ AS + P+ PP + G + + G Q
Sbjct: 965 LPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQ 1024
Query: 230 IPGVGNIHSGATPP 243
G GA PP
Sbjct: 1025 QQPAGAPQPGAVPP 1038
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 33.9 bits (76), Expect = 0.21
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 72 EVREHLSHGNLTVLYGGLL-------EHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQ 124
+V + GNL+ L +HLA+ E +K K E QMK K + +
Sbjct: 879 KVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKI--KSLVALLVETQMK-KLEIKLR 935
Query: 125 DYARFKKSMVKGLDSYEEKEDKVIK-------------EMAAQIREVEQSRQEVVRS--V 169
+ + M + ++ E + +++ EM A+ + +Q Q+ +
Sbjct: 936 HFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPA 995
Query: 170 LEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQD 229
L P + P P G++ P + G+ AS + P+ PP + G + + G Q
Sbjct: 996 LPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQ 1055
Query: 230 IPGVGNIHSGATPP 243
G GA PP
Sbjct: 1056 QQPAGAPQPGAVPP 1069
>gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens]
Length = 582
Score = 33.9 bits (76), Expect = 0.21
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 68 CCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFWWENKAE-VQMKEKFLVTPQDY 126
C C V + L+ + +HL SP+H K + + K E V L P
Sbjct: 407 CSACSVY-------IPALHSSVQQHLKSPDHIKGKQAYKEQIKRESVLTATSILNNPIVK 459
Query: 127 ARFKKSMVKG--------------LDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEP 172
AR+++ VKG ++ EE E+K+ + + + E E+ E V V E
Sbjct: 460 ARYER-FVKGENPFEIQDHSQDQQIEGDEEDEEKIDEPIEEEEDEDEEEEAEEVGEVEEV 518
Query: 173 QAVPDPEEG 181
+ V + EG
Sbjct: 519 EEVEEVREG 527
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 156 REVEQSRQEVVRSVLEPQAVPDPEEGSSAPRSWKG---MNSQVASSLQQPSNLDLPPAPE 212
+E+++ R+EVVR ++ P P G PRS G +N++ S+Q+ S P P
Sbjct: 207 KEIQRERREVVRKIV-PTTTKRPHSG---PRSNPGAGRLNNETRPSVQEDSQAFNPDNP- 261
Query: 213 LDWMETGPSLTFIGHQDIPGV 233
+ + G S+TF D G+
Sbjct: 262 --YHQEGESMTFDPRLDHEGI 280
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 33.1 bits (74), Expect = 0.35
Identities = 31/158 (19%), Positives = 70/158 (44%), Gaps = 28/158 (17%)
Query: 24 RKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEHERCCWCLCCGCEVREHLSHGNLT 83
RK + K +++L Q+EAA K I+ ++E+ + + L L
Sbjct: 734 RKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSK--------ASSITRELQGRELK 785
Query: 84 VLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEK 143
+ L E+L+ K T E + ++ +KEKF ++ ++SM + ++ +K
Sbjct: 786 LT--NLQENLSEVSQVKET----LEKELQI-LKEKFAEASEEAVSVQRSMQETVNKLHQK 838
Query: 144 EDKV-------------IKEMAAQIREVEQSRQEVVRS 168
E++ + +M A+ RE ++ ++++++
Sbjct: 839 EEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 876
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 33.1 bits (74), Expect = 0.35
Identities = 31/158 (19%), Positives = 70/158 (44%), Gaps = 28/158 (17%)
Query: 24 RKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEHERCCWCLCCGCEVREHLSHGNLT 83
RK + K +++L Q+EAA K I+ ++E+ + + L L
Sbjct: 769 RKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSK--------ASSITRELQGRELK 820
Query: 84 VLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEK 143
+ L E+L+ K T E + ++ +KEKF ++ ++SM + ++ +K
Sbjct: 821 LT--NLQENLSEVSQVKET----LEKELQI-LKEKFAEASEEAVSVQRSMQETVNKLHQK 873
Query: 144 EDKV-------------IKEMAAQIREVEQSRQEVVRS 168
E++ + +M A+ RE ++ ++++++
Sbjct: 874 EEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 911
>gi|109148531 coiled-coil domain containing 98 [Homo sapiens]
Length = 409
Score = 32.7 bits (73), Expect = 0.46
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 131 KSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAVPDPEE 180
KS+ K ++ E+ DK++K++ RE+E+ R +++ E DP+E
Sbjct: 227 KSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQKDPQE 276
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.3 bits (72), Expect = 0.60
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 35/162 (21%)
Query: 133 MVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVL-----EPQAVPDPEEGSSAPRS 187
+++ L +E+KE + ++++AQ++ +Q +Q+ + L QA+ P EGSS S
Sbjct: 3248 LIEDLLEHEKKELQKKQQLSAQLQPAQQQQQQQQQHSLLSAPGPAQAMSLPHEGSSP--S 3305
Query: 188 WKGMNSQVA--------SSLQQPSNLDLPPAPELDWMETGPSLTFIGHQ----------- 228
G Q++ L QP PPA L PS+ + +Q
Sbjct: 3306 LAGSQQQLSLGLAGARQPGLPQPLMPTQPPAHALQ-QRLAPSMAMVSNQGHMLSGQHGGQ 3364
Query: 229 --------DIPGVGNIHSGATPPWMIQDEEYIAGNQEIGPSY 262
P + G PP M + +A Q++ S+
Sbjct: 3365 AGLVPQQSSQPVLSQKPMGTMPPSMCMKPQQLAMQQQLANSF 3406
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 32.3 bits (72), Expect = 0.60
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 136 GLDSYEEKEDKVIKEMAAQIR----EVEQSRQEVVRSVLEPQAVPDPEEGSSAPRSWKGM 191
GL S + E++ ++E+ + R E SR + E +A+ PE G++ P W+
Sbjct: 1917 GLSSSSDSEEEELEELPSVPRPLQPEFSGSRVSLTDIPTEDEALGTPETGAATPMDWQEQ 1976
Query: 192 NSQVASSLQQPSNLDLP 208
+ + PS LP
Sbjct: 1977 GRAPSQDQEAPSPEALP 1993
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 32.3 bits (72), Expect = 0.60
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 156 REVEQSRQEVVRSVLEPQAVPDPEEGSSAPRSWKG---MNSQVASSLQQPSNLDLPPAPE 212
+E+++ R+EVVR ++ P P G PRS G +N++ S+Q+ S P P
Sbjct: 207 KEIQRERREVVRKIV-PTTTKRPHSG---PRSNPGAGRLNNETRPSVQEDSQAFNPDNPY 262
Query: 213 LDWMETGPSLTFIGHQDIPGV 233
+ G S+TF D G+
Sbjct: 263 --HQQEGESMTFDPRLDHEGI 281
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 116 KEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAV 175
K+K L TPQ +S G E+K ++ + M +R ++ + +L +
Sbjct: 334 KDKILETPQKMTEKSESKTPGEGKKEDKS-RMAEPMKGYMRP---TKSRGLTPLLPKSTI 389
Query: 176 PDPEE-------GSSAPRSWKGMNSQVASSLQQPSNLDLPPAPE 212
+ E G + P + + S + + P N +LPP+PE
Sbjct: 390 QEQERHKQLKSAGIARPEEGRPVVSGTGNDITTPPNKELPPSPE 433
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 116 KEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAV 175
K+K L TPQ +S G E+K ++ + M +R ++ + +L +
Sbjct: 334 KDKILETPQKMTEKSESKTPGEGKKEDKS-RMAEPMKGYMRP---TKSRGLTPLLPKSTI 389
Query: 176 PDPEE-------GSSAPRSWKGMNSQVASSLQQPSNLDLPPAPE 212
+ E G + P + + S + + P N +LPP+PE
Sbjct: 390 QEQERHKQLKSAGIARPEEGRPVVSGTGNDITTPPNKELPPSPE 433
>gi|163310749 LIM and calponin homology domains 1 isoform e [Homo
sapiens]
Length = 890
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 104 KFW-WENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSR 162
KFW W+ + E + +EK+ Q+ R + + Y++++DK+ +E +EVE+
Sbjct: 597 KFWAWDPEEERRRQEKW---QQEQERLLQ------ERYQKEQDKLKEEWEKAQKEVEEEE 647
Query: 163 Q---EVVRSVLEPQAVPDPEEGSSA 184
+ E R ++E VP SSA
Sbjct: 648 RRYYEEERKIIEDTVVPFTVSSSSA 672
>gi|163310747 LIM and calponin homology domains 1 isoform d [Homo
sapiens]
Length = 902
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 104 KFW-WENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSR 162
KFW W+ + E + +EK+ Q+ R + + Y++++DK+ +E +EVE+
Sbjct: 609 KFWAWDPEEERRRQEKW---QQEQERLLQ------ERYQKEQDKLKEEWEKAQKEVEEEE 659
Query: 163 Q---EVVRSVLEPQAVPDPEEGSSA 184
+ E R ++E VP SSA
Sbjct: 660 RRYYEEERKIIEDTVVPFTVSSSSA 684
>gi|163310745 LIM and calponin homology domains 1 isoform c [Homo
sapiens]
Length = 1056
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 104 KFW-WENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSR 162
KFW W+ + E + +EK+ Q+ R + + Y++++DK+ +E +EVE+
Sbjct: 763 KFWAWDPEEERRRQEKW---QQEQERLLQ------ERYQKEQDKLKEEWEKAQKEVEEEE 813
Query: 163 Q---EVVRSVLEPQAVPDPEEGSSA 184
+ E R ++E VP SSA
Sbjct: 814 RRYYEEERKIIEDTVVPFTVSSSSA 838
>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
sapiens]
Length = 1057
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 104 KFW-WENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSR 162
KFW W+ + E + +EK+ Q+ R + + Y++++DK+ +E +EVE+
Sbjct: 764 KFWAWDPEEERRRQEKW---QQEQERLLQ------ERYQKEQDKLKEEWEKAQKEVEEEE 814
Query: 163 Q---EVVRSVLEPQAVPDPEEGSSA 184
+ E R ++E VP SSA
Sbjct: 815 RRYYEEERKIIEDTVVPFTVSSSSA 839
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 104 KFW-WENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSR 162
KFW W+ + E + +EK+ Q+ R + + Y++++DK+ +E +EVE+
Sbjct: 764 KFWAWDPEEERRRQEKW---QQEQERLLQ------ERYQKEQDKLKEEWEKAQKEVEEEE 814
Query: 163 Q---EVVRSVLEPQAVPDPEEGSSA 184
+ E R ++E VP SSA
Sbjct: 815 RRYYEEERKIIEDTVVPFTVSSSSA 839
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 81 NLTVLYGGLLEHLASPEHKK-------ATNKFWWENKAEVQMKEKFLVTPQDYARFKKSM 133
N+ + G LL L + E K A + W + + KE L + + +
Sbjct: 3129 NMMLSKGELLSTLLTKEKAKGIQAKVTAAKEDWKNFHSNLHQKESALENLKIQMKDFEVS 3188
Query: 134 VKGLDSYEEKEDKVIKEMAAQIREVEQSR--QEVVRSVLEPQAVPDPE------------ 179
+ + + K +K++ E + ++ ++ R Q+ ++SVLE +P+
Sbjct: 3189 AEPIQDWLSKTEKMVHESSNRLYDLPAKRREQQKLQSVLEEIHCYEPQLNRLKEKAQQLW 3248
Query: 180 EGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELD 214
EG +A +S++ SQ++S SNL LD
Sbjct: 3249 EGQAASKSFRHRVSQLSSQYLALSNLTKEKVSRLD 3283
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 81 NLTVLYGGLLEHLASPEHKK-------ATNKFWWENKAEVQMKEKFLVTPQDYARFKKSM 133
N+ + G LL L + E K A + W + + KE L + + +
Sbjct: 3122 NMMLSKGELLSTLLTKEKAKGIQAKVTAAKEDWKNFHSNLHQKESALENLKIQMKDFEVS 3181
Query: 134 VKGLDSYEEKEDKVIKEMAAQIREVEQSR--QEVVRSVLEPQAVPDPE------------ 179
+ + + K +K++ E + ++ ++ R Q+ ++SVLE +P+
Sbjct: 3182 AEPIQDWLSKTEKMVHESSNRLYDLPAKRREQQKLQSVLEEIHCYEPQLNRLKEKAQQLW 3241
Query: 180 EGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELD 214
EG +A +S++ SQ++S SNL LD
Sbjct: 3242 EGQAASKSFRHRVSQLSSQYLALSNLTKEKVSRLD 3276
>gi|219521876 serum/glucocorticoid regulated kinase 1 isoform 2
[Homo sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 59 EHERCCWCLCCGCEVREHLSHGNL 82
E+E C W GCEVRE +H N+
Sbjct: 82 ENESCSWETQSGCEVREPCNHANI 105
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 30.8 bits (68), Expect = 1.8
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 172 PQAVPDPEEGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQDIP 231
PQ +G P GM QV +PP + GP + G +D
Sbjct: 218 PQGGGQHYQGQQPPM---GMMGQVNQGNHMMGQRQIPPYRP---PQQGPPQQYSGQEDYY 271
Query: 232 GVGNIHSGATPPWMIQDEEYIAGNQEIG---PSYEE 264
G H G PP + + Y G+ + G PSY E
Sbjct: 272 GDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPE 307
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 30.8 bits (68), Expect = 1.8
Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 17/182 (9%)
Query: 110 KAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSV 169
KA + KEK P+ + K+ K +EK K K+ + R + E +
Sbjct: 126 KATKKPKEK---PPKATKKPKEKPPKATKKPKEKPPKATKKPPSGKRPPILAPSETLEWP 182
Query: 170 LEPQAVPDPEE-----GSSAPRSWK--GMNSQVASSLQQPSNLDLPPAPELDWMETGPSL 222
L P P PEE G+ +W+ G + V + QP + P LD+ + +
Sbjct: 183 LPPPPSPGPEELPQEGGAPLSNNWQNPGEETHVEAREHQPEPEEETEQPTLDYND---QI 239
Query: 223 TFIGHQDIPGVGNIHSGATPPWMIQDEEYI----AGNQEIGPSYEEFLKEKEKQKLKKLP 278
++D + PP + E + + P+ EE ++ K L LP
Sbjct: 240 EREDYEDFEYIRRQKQPRPPPSRRRRPERVWPEPPEEKAPAPAPEERIEPPVKPLLPPLP 299
Query: 279 PD 280
PD
Sbjct: 300 PD 301
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 30.8 bits (68), Expect = 1.8
Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 7 CPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEHERC-CW 65
CP+CRQ F + + + RQL + L E +++A Q ER ER +
Sbjct: 51 CPVCRQRFL-----LKNLRPNRQLANMVNNL---KEISQEAREGTQGERCAVHGERLHLF 102
Query: 66 C------LCCGC-EVREHLSHGNLTVLYGGLLEHLASPEHKK---ATNKFWWENKAEVQM 115
C LC C + R+H H + LE A +K A + + + ++
Sbjct: 103 CEKDGKALCWVCAQSRKHRDHAMVP------LEEAAQEYQEKLQVALGELRRKQELAEKL 156
Query: 116 KEKFLVTPQDYARFKKSMVKGLDS-YEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQA 174
+ + + D+ + ++ + + + ++++ +++E Q++E+E+ +E +R + E +A
Sbjct: 157 EVEIAIKRADWKKTVETQKSRIHAEFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEA 216
>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
sapiens]
Length = 554
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 91 EHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKE 150
+H S E + W EN+ Q K+ T +D ++ +SMVK + +K+ E
Sbjct: 300 DHGTSIEEIEEQMDDWLENRNRTQKKQAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE 359
Query: 151 MAAQIREVEQSRQEVVRSV 169
+ + +V +++ SV
Sbjct: 360 LGRSVTDVTTKAKQLKDSV 378
>gi|219555700 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 150 EMAAQIREVEQSRQEVVRSVLEPQAVPDPEEGSS-APRSWKGMNSQVASSLQQPSNLDLP 208
+MA + + +E+SR +R + E QA+ + + A + W+ ++ ++ S L LP
Sbjct: 327 QMAIRAKRLEESRAAALRELQEKQALMEQQRREKRALQEWRERAQRMRKRKEELSKL-LP 385
Query: 209 PAPELDWMETGPSLTFIGHQDIPGVGNIHSGATPPWMIQ--DEEYIAGNQEIGPSYEEFL 266
P + + + I ++ +P PP ++ E+ ++E+ E L
Sbjct: 386 PRRSMVASKIPSATDLIDNRKVP--------LNPPGKMKPSKEKSPQASKEMSALQERNL 437
Query: 267 KEKEKQKLKKLPPDR 281
+EK KQ + ++ R
Sbjct: 438 EEKIKQHVLQMREQR 452
>gi|55741567 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 150 EMAAQIREVEQSRQEVVRSVLEPQAVPDPEEGSS-APRSWKGMNSQVASSLQQPSNLDLP 208
+MA + + +E+SR +R + E QA+ + + A + W+ ++ ++ S L LP
Sbjct: 327 QMAIRAKRLEESRAAALRELQEKQALMEQQRREKRALQEWRERAQRMRKRKEELSKL-LP 385
Query: 209 PAPELDWMETGPSLTFIGHQDIPGVGNIHSGATPPWMIQ--DEEYIAGNQEIGPSYEEFL 266
P + + + I ++ +P PP ++ E+ ++E+ E L
Sbjct: 386 PRRSMVASKIPSATDLIDNRKVP--------LNPPGKMKPSKEKSPQASKEMSALQERNL 437
Query: 267 KEKEKQKLKKLPPDR 281
+EK KQ + ++ R
Sbjct: 438 EEKIKQHVLQMREQR 452
>gi|222352183 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 2 [Homo sapiens]
Length = 854
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 147 VIKEMAAQIREVEQS---RQEVVRSVLEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPS 203
V E IR++ Q R+ R + P+P EG P W+ ++ +V +
Sbjct: 108 VSSESDNNIRQINQEAAHRRFRSRRHISEDLEPEPSEGGDVPEPWETISEEV-NIAGDSL 166
Query: 204 NLDLPPAPELDWMETGP 220
L LPP P T P
Sbjct: 167 GLALPPPPASPGSRTSP 183
>gi|21361472 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 3 [Homo sapiens]
Length = 955
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 147 VIKEMAAQIREVEQS---RQEVVRSVLEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPS 203
V E IR++ Q R+ R + P+P EG P W+ ++ +V +
Sbjct: 229 VSSESDNNIRQINQEAAHRRFRSRRHISEDLEPEPSEGGDVPEPWETISEEV-NIAGDSL 287
Query: 204 NLDLPPAPELDWMETGP 220
L LPP P T P
Sbjct: 288 GLALPPPPASPGSRTSP 304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,585,567
Number of Sequences: 37866
Number of extensions: 715620
Number of successful extensions: 3303
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 3215
Number of HSP's gapped (non-prelim): 151
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.